CK740044

Overview
NameCK740044
Unique NameCK740044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length348
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCA_HUMAN (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Homo sapiens GN=SUCLG1 PE=1 SV=4)

HSP 1 Score: 160.229 bits (404), Expect = 2.874e-39
Identity = 77/112 (68.75%), Postives = 85/112 (75.89%), Query Frame = 2
Query:    5 RQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKE 340
            RQ KTRLIGPNCPG+I PGECKIGIMPG+IHK GR+GIVSRSGTLTYEAV QTT VGLGQS CVGIGGDPFNGT+F+DCLE FL D  T               +AA  +K+
Sbjct:  161 RQEKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFIDCLEIFLNDSATEGIILIGEIGGNAEENAAEFLKQ 272          
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCD_RICTY (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia typhi GN=sucD PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.092e-38
Identity = 76/111 (68.47%), Postives = 85/111 (76.58%), Query Frame = 2
Query:   11 SKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKES 343
            SKTRLIGPNCPG+I PGECKIGIMPG+IHK G +GIVSRSGTLTYEAV QTT VGLGQSTC+GIGGDP NGT+FV+C+E FL D +T               DAA  IK+S
Sbjct:  115 SKTRLIGPNCPGVITPGECKIGIMPGHIHKTGIIGIVSRSGTLTYEAVAQTTAVGLGQSTCIGIGGDPVNGTSFVECIEMFLQDDETKAIIMIGEIGGNAEEDAADFIKQS 225          
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCD_RICPR (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia prowazekii GN=sucD PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.092e-38
Identity = 77/111 (69.37%), Postives = 84/111 (75.68%), Query Frame = 2
Query:   11 SKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKES 343
            SKTRLIGPNCPG+I PGECKIGIMPG+IHK G +GIVSRSGTLTYEAV QTT  GLGQSTCVGIGGDP NGT+FVDC+E FL D +T               DAA  IK+S
Sbjct:  115 SKTRLIGPNCPGVITPGECKIGIMPGHIHKIGDIGIVSRSGTLTYEAVAQTTAAGLGQSTCVGIGGDPVNGTSFVDCIEMFLQDDETKAIIMIGEIGGSAEEDAADFIKQS 225          
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCA_DROME (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Drosophila melanogaster GN=Scsalpha PE=2 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 1.207e-37
Identity = 69/88 (78.41%), Postives = 80/88 (90.91%), Query Frame = 2
Query:    8 QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 271
            QSK+RL+GPNCPGII P +CKIGIMPG+IHK G++G+VSRSGTLTYEAV QTT VGLGQ+ CVGIGGDPFNGT+F+DCLE FL DP+T
Sbjct:  144 QSKSRLVGPNCPGIIAPEQCKIGIMPGHIHKRGKIGVVSRSGTLTYEAVHQTTEVGLGQTLCVGIGGDPFNGTDFIDCLEVFLKDPET 231          
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCD_RICBR (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia bellii (strain RML369-C) GN=sucD PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.577e-37
Identity = 75/111 (67.57%), Postives = 83/111 (74.77%), Query Frame = 2
Query:   11 SKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKES 343
            S+TRLIGPNCPGII P ECKIGIMPG+IH+ G +GIVSRSGTLTYEAV QTT VGLGQSTCVGIGGDP NGTNFVDC++ FL D +T               +AA  IK S
Sbjct:  115 SRTRLIGPNCPGIITPDECKIGIMPGHIHRKGSIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPVNGTNFVDCIDMFLQDDETKAIIMIGEIGGDAEENAADFIKHS 225          
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCA_CAEEL (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=C05G5.4 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.577e-37
Identity = 73/112 (65.18%), Postives = 84/112 (75.00%), Query Frame = 2
Query:    5 RQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKE 340
            +Q+KTRL+GPNCPGII   +CKIGIMPG+IHK G +GIVSRSGTLTYEAV QTT VG GQ+ CVGIGGDPFNGTNF+DCL  FL DP+T               +AAA +KE
Sbjct:  139 KQNKTRLVGPNCPGIISADQCKIGIMPGHIHKRGCIGIVSRSGTLTYEAVHQTTQVGFGQTLCVGIGGDPFNGTNFIDCLNVFLEDPETKGIILIGEIGGSAEEEAAAYLKE 250          
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCA_NEUCR (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Neurospora crassa GN=8D4.130 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 5.992e-37
Identity = 74/111 (66.67%), Postives = 83/111 (74.77%), Query Frame = 2
Query:    8 QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKE 340
            QSKTRL+GPNCPGII PG+CKIGIMPG+IHK GR+GIVSRSGTLTYEAV QTT  GLGQS  VGIGGDPF+GTNF+DCL+ FL D  T               +AA  +KE
Sbjct:  149 QSKTRLVGPNCPGIIAPGQCKIGIMPGFIHKRGRIGIVSRSGTLTYEAVNQTTQAGLGQSLVVGIGGDPFSGTNFIDCLKVFLEDGDTDGIIMIGEIGGSAEEEAADFLKE 259          
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCD_ECOLI (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli (strain K12) GN=sucD PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 8.653e-36
Identity = 72/111 (64.86%), Postives = 81/111 (72.97%), Query Frame = 2
Query:    8 QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKE 340
            ++  R+IGPNCPG+I PGECKIGI PG+IHKPG+VGIVSRSGTLTYEAV QTT  G GQSTCVGIGGDP  G+NF+D LE F  DPQT               +AAA IKE
Sbjct:  114 EAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKE 224          
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCD_ECOL6 (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli O6 GN=sucD PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 8.653e-36
Identity = 72/111 (64.86%), Postives = 81/111 (72.97%), Query Frame = 2
Query:    8 QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKE 340
            ++  R+IGPNCPG+I PGECKIGI PG+IHKPG+VGIVSRSGTLTYEAV QTT  G GQSTCVGIGGDP  G+NF+D LE F  DPQT               +AAA IKE
Sbjct:  114 EAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKE 224          
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCD_ECO57 (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli O157:H7 GN=sucD PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 8.653e-36
Identity = 72/111 (64.86%), Postives = 81/111 (72.97%), Query Frame = 2
Query:    8 QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKE 340
            ++  R+IGPNCPG+I PGECKIGI PG+IHKPG+VGIVSRSGTLTYEAV QTT  G GQSTCVGIGGDP  G+NF+D LE F  DPQT               +AAA IKE
Sbjct:  114 EAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKE 224          
The following BLAST results are available for this feature:
BLAST of CK740044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SUCA_HUMAN2.874e-3968.75Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCD_RICTY1.092e-3868.47Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_RICPR1.092e-3869.37Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCA_DROME1.207e-3778.41Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCD_RICBR1.577e-3767.57Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCA_CAEEL1.577e-3765.18Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCA_NEUCR5.992e-3766.67Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCD_ECOLI8.653e-3664.86Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_ECOL68.653e-3664.86Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_ECO578.653e-3664.86Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6538 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740044 ID=CK740044; Name=CK740044; organism=Citrus sinensis; type=EST; length=348bp
AAACAGGCAATCTAAAACTCGGCTGATTGGTCCCAACTGCCCTGGTATCA
TCAAACCTGGAGAATGTAAGATTGGCATTATGCCTGGGTATATTCACAAA
CCTGGGCGGGTTGGAATTGTTTCTCGATCTGGTACCTTGACCTACGAAGC
AGTTTTTCAAACAACTGTAGTTGGCCTTGGACAATCAACCTGTGTAGGTA
TAGGTGGGGATCCTTTTAATGGGACAAACTTTGTTGATTGCCTTGAAAAG
TTCCTAGTTGATCCCCAGACAGAAGGTATTATTCTAATAGGAGAGATCGG
TGGGACTGCAGAAGAGGATGCCGCTGCCTTGATAAAGGAAAGTGGGAC
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