CK740073

Overview
NameCK740073
Unique NameCK740073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.437e-44
Identity = 85/142 (59.86%), Postives = 112/142 (78.87%), Query Frame = 2
Query:  281 VDTQSVLKRLQSELMALMMSGDSGISAFPEED-NIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE-EYRKM 700
            VD  SV KRL+SELM+LMMS   GISAFP+ D N+  W GTI G  DT +EG ++++S+SFP +YP+ PP + F +  +HPNVD+ GNICLDIL+DKWS+ Y+V+TILLS+QSLLGEPN +SPLN+QAA+LWS    EY+++
Sbjct:   24 VDGHSVTKRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYKRL 165          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC11_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC11 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.250e-38
Identity = 79/136 (58.09%), Postives = 102/136 (75.00%), Query Frame = 2
Query:  296 VLKRLQSELMALMMSGDSGISAFPEEDN-IFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRK 697
            V KRLQ+EL+ L+ S    ISAFP +DN +  W G I G KDT + G ++++SL FP +YPF PP +KF +  +HPNVD  GNICLDIL++KWS+ Y+V TILLS+QSLLGEPN  SPLN+ AA+LW ++ EEYRK
Sbjct:    9 VTKRLQNELLQLLSSTTESISAFPVDDNDLTYWVGYITGPKDTPYSGLKFKVSLKFPQNYPFHPPMIKFLSPMWHPNVDKSGNICLDILKEKWSAVYNVETILLSLQSLLGEPNNRSPLNAVAAELWDADMEEYRK 144          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.348e-31
Identity = 69/133 (51.88%), Postives = 86/133 (64.66%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRK 697
            +RL  +   L     +G+S  P EDNI  W+  I G ++T FE   ++LSL F  +YP KPP VKF +  FHPNV   G+ICLDILQ++WS  YDV  IL SIQSLL EPN +SP NS AAQL+  N+ EY K
Sbjct:    7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEK 139          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.647e-30
Identity = 66/133 (49.62%), Postives = 86/133 (64.66%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRK 697
            +RL  +   L     +G+S  P E+NI  W   I G + T FE   ++L++ F  +YP KPP V+F +  FHPNV   G+ICLDILQ++WS  YDV +IL SIQSLL EPN +SP NSQAAQL+  N+ EY K
Sbjct:    7 RRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEK 139          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.647e-30
Identity = 66/133 (49.62%), Postives = 86/133 (64.66%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRK 697
            +RL  +   L     +G+S  P E+NI  W   I G + T FE   ++L++ F  +YP KPP V+F +  FHPNV   G+ICLDILQ++WS  YDV +IL SIQSLL EPN +SP NSQAAQL+  N+ EY K
Sbjct:    7 RRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEK 139          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.221e-30
Identity = 65/133 (48.87%), Postives = 88/133 (66.17%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWS-NQEEYRK 697
            KRL  +   L     +GIS  P+++NI  W   I G  DT ++G  ++LSL F  DYP KPP V+F +  FHPN+   G+ICLDILQ++WS  YDV  IL SIQSLL +PN +SP NS+AA+++S N+ EY +
Sbjct:    7 KRLMRDFKRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNR 139          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.061e-29
Identity = 64/133 (48.12%), Postives = 88/133 (66.17%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWS-NQEEYRK 697
            KRL  +   L     +GIS  P+++NI  W   I G  DT ++G  ++LSL F  DYP KPP V+F +  FHPN+   G+ICLDILQ++WS  YDV  IL SIQSLL +PN +SP NS+AA+++S ++ EY +
Sbjct:    7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNR 139          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.386e-29
Identity = 64/133 (48.12%), Postives = 88/133 (66.17%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWS-NQEEYRK 697
            KRL  +   L     +GIS  P+++NI  W   I G  DT ++G  ++LSL F  DYP KPP V+F +  FHPN+   G+ICLDILQ++WS  YDV  IL SIQSLL +PN +SP NS+AA+++S ++ EY +
Sbjct:    7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNR 139          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.810e-29
Identity = 64/133 (48.12%), Postives = 87/133 (65.41%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWS-NQEEYRK 697
            KRL  +   L     +GIS  P ++NI  W   I G  DT ++G  ++L+L F  DYP KPP V+F +  FHPN+   G+ICLDILQ++WS  YDV  IL SIQSLL +PN +SP NS+AA+++S N+ EY +
Sbjct:    7 KRLMRDFKRLQQDPPAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNR 139          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC2_CANAL (Ubiquitin-conjugating enzyme E2 2 OS=Candida albicans GN=UBC2 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.810e-29
Identity = 63/126 (50.00%), Postives = 80/126 (63.49%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSN 679
            +RL  +   +     SG+SA P  DN+  W   I G  DT FE   +RL LSF   YP KPP+VKF +  FHPNV   G +CLDILQ++WS  YDV +IL S+QSLL +PNISSP N +AA L+ +
Sbjct:    7 RRLMRDFKRMQQDPPSGVSASPLPDNVMKWNAVIIGPSDTPFEDGTFRLLLSFDEQYPNKPPQVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSVQSLLNDPNISSPANVEAANLYKD 132          
The following BLAST results are available for this feature:
BLAST of CK740073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UBC11_SCHPO4.437e-4459.86Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBC11_YEAST1.250e-3858.09Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC1_CAEEL7.348e-3151.88Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBE2A_MOUSE3.647e-3049.62Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN3.647e-3049.62Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBC2_MEDSA6.221e-3048.87Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC1_ARATH1.061e-2948.12Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBC2_ARATH1.386e-2948.12Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBC2_WHEAT1.810e-2948.12Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBC2_CANAL1.810e-2950.00Ubiquitin-conjugating enzyme E2 2 OS=Candida albic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6567 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740073 ID=CK740073; Name=CK740073; organism=Citrus sinensis; type=EST; length=700bp
AACACTCTCTGAAGAAGAAGAGAAGATCAATAAAACCCTAATTCGTTCTC
TTCTTCTTCTTCTTCTTCTCATTGTCACTGCAATTGAGCAATCCGACAGC
GTTTTCTTGCCCTTTCTTGATCTGGGTTATTGAGTTTTCTTTGTTTGAAT
CAAGAAACAAAGAAGAAAGAAAAATAATACAAAAGTTATGGCTACAGTTA
ACGGGTACCAAGGCAATACTCCGGTGGCCGCTTCGACAACGGCAACAGCA
CCGAAACAGCCCGTCAACACTTTAAAGACTGTGGATACGCAATCTGTGCT
TAAAAGGCTGCAATCTGAATTGATGGCCTTAATGATGAGTGGGGATTCTG
GGATATCTGCATTCCCGGAGGAGGATAACATATTCTGCTGGAAAGGGACG
ATCCAGGGCAGCAAAGACACTGTTTTCGAAGGAACTGAATACAGGCTTTC
CCTTTCATTTCCCAATGATTACCCCTTCAAGCCTCCTAAAGTGAAGTTCG
AAACCGGCTGCTTCCACCCCAATGTTGATATCTACGGCAATATTTGCTTG
GACATTCTCCAGGATAAATGGTCATCAGCTTATGATGTGAGAACCATTCT
GCTATCGATCCAGTCTCTGCTTGGAGAACCAAACATTAGCTCTCCTCTAA
ACAGCCAGGCAGCACAACTTTGGAGCAATCAAGAAGAATATAGGAAGATG
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