CK740100

Overview
NameCK740100
Unique NameCK740100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length503
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK740100 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.344e-24
Identity = 51/84 (60.71%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:  197 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLRHDCGHGSFS 448
            FDPGAPPPFK+ADIRAAIPKHCW K   +S+SY                        PLYW AQGTMFWALFVL HDCGHGSFS
Sbjct:   22 FDPGAPPPFKIADIRAAIPKHCWEKSTLRSLSYVLRDVLVVTALAASAISFNSWFFWPLYWPAQGTMFWALFVLGHDCGHGSFS 105
The following BLAST results are available for this feature:
BLAST of CK740100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
FAD3E_PHAAU3.344e-2460.71Omega-3 fatty acid desaturase, endoplasmic reticul... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6594 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740100 ID=CK740100; Name=CK740100; organism=Citrus sinensis; type=EST; length=503bp
AAAAAGAGTTTAACAGATCTAAAGCTCCCATTAGTTAAATGTTCGGGTGA
TTTTTCTAGAGACAGGAACTGGGGTCTTAAAGTTAGTGCTCCACTGAGGG
TGGCACCACCTTGAGGGGGAGGATGAAGAAGAGAGAATCAACGGTGTTAA
TGGGATTGGAAATAACAAAGGAGTCGAAGAAGAAGAGGGATCTGAATTTG
ATCCTGGGGCTCCTCCTCCTTTCAAGCTAGCTGATATTAGAGCTGCTATT
CCAAAGCATTGTTGGGTTAAGGATCCTTGGAAGTCTATGAGCTATGTTGT
TAGAGATGTTGTGGTGGTTTTTGGCTTGGCTGCTGCTGCTGCTTATTTGA
ACAATTGGGTTGTTTGGCCTTTGTACTGGGCTGCTCAGGGAACCATGTTT
TGGGCTCTTTTTGTGCTCCGTCATGATTGTGGTCATGGAAGCTTTTCAAT
GATCACAAGTTGAATAGTGTGGTGGGGCATCTGCTGCATTCTTCAATTCT
GGT
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