CK740143

Overview
NameCK740143
Unique NameCK740143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.719e-53
Identity = 116/205 (56.59%), Postives = 125/205 (60.98%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKK-TFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 609
            PTYVVGVN   Y  D   IISNASCTTNCLAPFVKVLD++ GI+KGTMTTTHSYTGDQ                  NIVPTST                 NGIALRVPTPN           K    AE+VN AFR++A   LKG+L VCD PLVSVDFRC              MG DMVKV+AWYDNEWGYSQRVVDLAD+VA
Sbjct:  214 PTYVVGVNEKDYGHDVANIISNASCTTNCLAPFVKVLDEELGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNIEKVGVTAEDVNNAFRKAAAGPLKGVLDVCDIPLVSVDFRCSDFSSTIDSSLTMVMGGDMVKVVAWYDNEWGYSQRVVDLADLVA 418          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3PA_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Scenedesmus vacuolatus GN=GapA PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.350e-52
Identity = 107/190 (56.32%), Postives = 117/190 (61.58%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWG 570
            PTYVVGVNA  YK  + IISNASCTTNCLAPFVKVLD+KFGI+KGTMT THSYTGDQ                  NIVPT+T                 NGIALRVPTPN           KKTFAEE+N AF+E+A   L G+L+V DEPLVSVDFRC              MG DMVKV+AWYDNEWG
Sbjct:  125 PTYVVGVNAHDYKHSDAIISNASCTTNCLAPFVKVLDEKFGIVKGTMTNTHSYTGDQRLLDASHRDLRRARAAALNIVPTTTGAAKAVALVLPKLKGKLNGIALRVPTPNVSVVDLVVQVEKKTFAEEINNAFKEAAAGSLNGVLAVSDEPLVSVDFRCTDVSSTIDSSLTMVMGADMVKVVAWYDNEWG 314          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P2_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Synechocystis sp. (strain PCC 6803) GN=gap2 PE=1 SV=3)

HSP 1 Score: 198.364 bits (503), Expect = 2.814e-50
Identity = 110/203 (54.19%), Postives = 120/203 (59.11%), Query Frame = 1
Query:    4 TYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 609
            TYVVGVNA  YK +E  +ISNASCTTNCLAPF KV++  FGIIKGTMTTTHSYTGDQ                  NIVPTST                 NGIALRVPTPN           K T AE+VN   +E+A+  LKG+L   D  LVS DFR               MG DMVKVIAWYDNEWGYSQRVVDLA+IVA
Sbjct:  131 TYVVGVNAHEYKHEEYEVISNASCTTNCLAPFGKVINDNFGIIKGTMTTTHSYTGDQRILDASHRDLRRARAAAVNIVPTSTGAAKAVALVIPELQGKLNGIALRVPTPNVSVVDLVVQVEKNTIAEQVNGVLKEAANTSLKGVLEYTDLELVSSDFRGTDCSSTVDGSLTMVMGGDMVKVIAWYDNEWGYSQRVVDLAEIVA 333          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3PA_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Gracilaria verrucosa GN=GAPA PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.269e-50
Identity = 102/204 (50.00%), Postives = 124/204 (60.78%), Query Frame = 1
Query:    4 TYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAT 612
            T+VVGVN   Y  D+  I+SNASCTTNC+APF+KVLD +FG+++G MTTTHSYTGDQ                  NIVPT+T                 NGIALRVPTPN          SKKTF EEVN A  ++A+  +KGI+   DEPLVS D+R               MGDDM+KV+AWYDNEWGYSQRVVDL +++A+
Sbjct:  210 TFVVGVNDHLYSHDKFDIVSNASCTTNCMAPFMKVLDDEFGVVRGMMTTTHSYTGDQRLLDAGHRDLRRARSAALNIVPTTTGAAKAVALVVPTLAGKLNGIALRVPTPNVSVCDVVMQVSKKTFKEEVNGALLKAANGSMKGIIKYSDEPLVSCDYRGTDESTIIDSSLTMVMGDDMLKVVAWYDNEWGYSQRVVDLGEVMAS 413          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3PA_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Chondrus crispus GN=GAPA PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.932e-49
Identity = 100/203 (49.26%), Postives = 122/203 (60.10%), Query Frame = 1
Query:    4 TYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 609
            T+VVGVN   Y  D+  I+SNASCTTNC+APF+KVLD +FG+++G MTTTHSYTGDQ                  NIVPT+T                 NGIALRVPTPN          +KKTF EEVN A  ++++  +KGI+   DEPLVS D R               MGDDM+KV+AWYDNEWGYSQRVVDL +++A
Sbjct:  208 TFVVGVNEKDYSHDKYDIVSNASCTTNCMAPFMKVLDDEFGVVRGMMTTTHSYTGDQRLLDAGHRDLRRARSAALNIVPTTTGAAKAVALVVPSLKGKLNGIALRVPTPNVSVCDVVMQVNKKTFKEEVNGALLKASEGAMKGIIKYSDEPLVSCDHRGTDESTIIDSSLTMVMGDDMIKVVAWYDNEWGYSQRVVDLGEVMA 410          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P2_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap2 PE=3 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 6.072e-45
Identity = 98/203 (48.28%), Postives = 119/203 (58.62%), Query Frame = 1
Query:    4 TYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 609
            T+V+GVN   Y  +   IISNASCTTNCLAP  KVL+ KFGIIKG+MTTTHSYTGDQ                  NIVPTST                 NG+ALRVPTPN           K+T  EEVN A +++++  LKGIL   +  LVS D++               MG+D+VKV+AWYDNEWGYSQRV+DLA++VA
Sbjct:  131 TFVIGVNHHDYDHNVHHIISNASCTTNCLAPIAKVLNDKFGIIKGSMTTTHSYTGDQRLLDASHRDLRRARAAAINIVPTSTGAAKAVALVIPELKGKLNGVALRVPTPNVSMVDFVVQVEKRTITEEVNQALKDASEGPLKGILDYSELQLVSSDYQGTDASSIVDASLTLVMGNDLVKVMAWYDNEWGYSQRVLDLAELVA 333          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P2_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena sp. (strain PCC 7120) GN=gap2 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.036e-44
Identity = 98/203 (48.28%), Postives = 119/203 (58.62%), Query Frame = 1
Query:    4 TYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 609
            T+V+GVN   Y  +   IISNASCTTNCLAP  KVL+ KFGIIKG+MTTTHSYTGDQ                  NIVPTST                 NG+ALRVPTPN           K+T  EEVN A +++++  LKGIL   +  LVS D++               MG+D+VKV+AWYDNEWGYSQRV+DLA++VA
Sbjct:  131 TFVMGVNHHDYDHNLHNIISNASCTTNCLAPIAKVLNDKFGIIKGSMTTTHSYTGDQRLLDASHRDLRRARAAAINIVPTSTGAAKAVALVIPELKGKLNGVALRVPTPNVSMVDFVVQVEKRTITEEVNQALKDASEGPLKGILDYSELQLVSSDYQGTDASSIVDANLTLVMGNDLVKVMAWYDNEWGYSQRVLDLAELVA 333          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P1_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus subtilis GN=gapA PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 6.948e-41
Identity = 95/206 (46.12%), Postives = 113/206 (54.85%), Query Frame = 1
Query:    4 TYVVGVNADAYKP-DEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVATTG 618
            T V+GVN D Y   +  +ISNASCTTNCLAPF KVL+ KFGI +G MTT HSYT DQ                  NI+PTST                 NG A+RVPTPN          +++  AEEVNAA +E+A+ +LKGIL   +EPLVS D+                M   MVKVI+WYDNE GYS RVVDLA  +A  G
Sbjct:  129 TIVMGVNEDKYDAANHDVISNASCTTNCLAPFAKVLNDKFGIKRGMMTTVHSYTNDQQILDLPHKDYRRARAAAENIIPTSTGAAKAVSLVLPELKGKLNGGAMRVPTPNVSLVDLVAELNQEVTAEEVNAALKEAAEGDLKGILGYSEEPLVSGDYNGNKNSSTIDALSTMVMEGSMVKVISWYDNESGYSNRVVDLAAYIAKKG 334          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P_BACST (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus stearothermophilus GN=gap PE=1 SV=5)

HSP 1 Score: 166.777 bits (421), Expect = 9.074e-41
Identity = 91/206 (44.17%), Postives = 114/206 (55.34%), Query Frame = 1
Query:    4 TYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVATTG 618
            T V+GVN D Y P    +ISNASCTTNCLAPF KVL ++FGI++G MTT HSYT DQ                  +I+PT+T                 NG+A+RVPTPN           K+   EEVNAA + +A+ ELKGIL+  +EPLVS D+                +   MVKV++WYDNE GYS RVVDLA  +A+ G
Sbjct:  129 TIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKG 334          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P_BACME (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus megaterium GN=gap PE=3 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 2.919e-39
Identity = 91/206 (44.17%), Postives = 110/206 (53.40%), Query Frame = 1
Query:    4 TYVVGVNADAYKP-DEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVATTG 618
            T V+GVN D Y   +  +ISNA CTTNCLAPF KVL+ KFG+ +G MTT HSYT DQ                  NI+PTST                 NG A+RVPTPN           K+   E+VN A +E+A+ +LKGIL   +EPLVS D+                M  +MVKVI+WYDNE GYS RVVDLA  +A  G
Sbjct:  129 TIVMGVNEDKYDAANHNVISNAPCTTNCLAPFAKVLNDKFGLKRGMMTTVHSYTNDQQILDLPHKDYRRARAAAENIIPTSTGAAKAVSLVLPELKGKLNGGAMRVPTPNVSLVDLVAELDKEVTVEDVNNALKEAAEGDLKGILGYSEEPLVSGDYNGNINSSTIDALSTMVMEGNMVKVISWYDNESGYSNRVVDLAQYIAAKG 334          
The following BLAST results are available for this feature:
BLAST of CK740143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3PB_SPIOL2.719e-5356.59Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_SCEVA1.350e-5256.32Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P2_SYNY32.814e-5054.19Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Syne... [more]
G3PA_GRAVE6.269e-5050.00Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3PA_CHOCR6.932e-4949.26Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3P2_ANAVT6.072e-4548.28Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P2_ANASP1.036e-4448.28Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P1_BACSU6.948e-4146.12Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]
G3P_BACST9.074e-4144.17Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P_BACME2.919e-3944.17Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6637 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740143 ID=CK740143; Name=CK740143; organism=Citrus sinensis; type=EST; length=654bp
CCAACCTACGTTGTTGGTGTCAATGCGGATGCTTACAAACCAGATGAGCC
CATCATCAGCAATGCTTCTTGCACAACCAACTGCCTTGCCCCATTCGTCA
AGGTTCTTGACCAGAAGTTTGGCATTATCAAGGGAACCATGACCACCACA
CACTCGTACACTGGCGACCAAAGACTACTCGATGCTAGCCACCGTGACCT
CAGGCGTGCAAGAGCAGCTGCACTCAACATTGTCCCAACATCAACTGGTG
CGGCAAAAGCTGTGGCCCTTGTCCTCCCAGCACTCAAAGGCAAACTAAAC
GGCATTGCCCTTCGTGTGCCAACACCAAACGTCTCGGTTGTTGATCTTGT
CGTTCAGGTGTCCAAGAAAACCTTCGCAGAAGAGGTGAACGCCGCCTTCA
GAGAAAGCGCTGACAATGAGCTGAAAGGCATCCTCTCCGTGTGCGACGAG
CCCCTTGTTTCGGTCGACTTCAGGTGCTCTGATGTATCCTCAACCGTTGA
TTCATCTCTCACACTTGTCATGGGAGACGACATGGTTAAGGTGATTGCAT
GGTATGACAATGAATGGGGTTACTCTCAAAGGGTTGTGGATTTGGCCGAC
ATTGTTGCCACAACTGGGAGTGAAGTAAATACTAAATCGGAACTCGGCTG
TAAT
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