CK740143

Overview
NameCK740143
Unique NameCK740143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P_PARBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=GPD PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.226e-34
Identity = 77/204 (37.75%), Postives = 104/204 (50.98%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 609
            P +V+GVN  +Y+PD  ++SNASCTTNCLAP  KV+   FGI +G MTT HSYT  Q                   NI+P+ST                  G+A+RVPT N           K    +++ AA + +++ ELKGIL   ++ LVS D                 + D  VK+I+WYDNEWGYS+RV+DL   +A
Sbjct:  129 PMFVMGVNEKSYRPDISVLSNASCTTNCLAPLAKVIHDNFGIAEGLMTTIHSYTATQKTVDGPSHKDWRGGRTAAQNIIPSSTGAAKAVGKVIPALNGKLTGMAMRVPTANVSVVDLTCRTEKPVTYDQIKAAVKAASEGELKGILGYSEDALVSTDLNGDPRSSIFDASAGIALNDRFVKLISWYDNEWGYSRRVLDLIAYIA 332          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P2_DROPS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila pseudoobscura pseudoobscura GN=Gapdh2 PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.074e-33
Identity = 78/199 (39.20%), Postives = 100/199 (50.25%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 594
            P +V GVN DAYKPD  ++SNASCTTNCLAP  KV++  F I++G MTT H+ T  Q                   NI+P +T                  G+A RVPTPN           K    +E+ A  +E+A+  LKGIL   DE +VS DF                + D  VK+I+WYDNE+GYS RV+DL
Sbjct:  126 PMFVCGVNLDAYKPDMKVVSNASCTTNCLAPLAKVINDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDL 324          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.403e-33
Identity = 83/205 (40.49%), Postives = 107/205 (52.20%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADN-ELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 609
            P +VVGVN DAYKPD  +ISNASCTTNCLAP  KV++ K+GII+G MTT HS T  Q                   NI+P+ST                  G++LRVPT +                E++ A  + ++++ ELKGIL   DE +VS DF                + D+ VK+I+WYDNE+GYS RVVDL   VA
Sbjct:  128 PMFVVGVNLDAYKPDMTVISNASCTTNCLAPLAKVVNDKYGIIEGLMTTVHSITATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVIPELNGKLTGMSLRVPTVDVSVVDLTVRIKNGASYEDIKATMKAASESPELKGILGYTDEDVVSTDFIGDTHSSIFDAKAGIGLNDNFVKLISWYDNEYGYSARVVDLIVAVA 332          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3PC_ANTMA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Antirrhinum majus GN=GAPC PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.403e-33
Identity = 77/199 (38.69%), Postives = 103/199 (51.76%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 594
            P +VVGVN   YK D  I+SNASCTTNCLAP  KV++ +FGI++G MTT HS T  Q                   NI+P+ST                  G++ RVPT +           KK   E++ AA +E ++ +LKGIL   ++ +VS DF                + D+ VK+++WYDNEWGYS RVVDL
Sbjct:  131 PMFVVGVNEKEYKSDLHIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPQLNGKLTGMSFRVPTVDVSVVDLTVRLEKKATYEQIKAAIKEESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVDL 329          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.833e-33
Identity = 76/199 (38.19%), Postives = 103/199 (51.76%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 594
            P +VVGVN   YKP+  I+SNASCTTNCLAP  KV++ +FGI++G MTT HS T  Q                   NI+P+ST                  G++ RVPT +           K    E+V AA +E ++ +LKGIL   ++ +VS DF                + D+ +K+++WYDNEWGYS RVVDL
Sbjct:  131 PMFVVGVNEHEYKPELDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVDVSVVDLTVRIEKPATYEQVKAAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALNDNFIKLVSWYDNEWGYSTRVVDL 329          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.833e-33
Identity = 77/199 (38.69%), Postives = 101/199 (50.75%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 594
            P +VVGVN   Y PD  ++SNASCTTNCLAP  KV+  +FGI++G MTT HS T  Q                   NI+P+ST                  G+A RVPT +          +K+   +E+ AA +E ++ +LKGIL   +E +VS DF                +    VK++AWYDNEWGYS RVVDL
Sbjct:  131 PMFVVGVNEKTYTPDIDVVSNASCTTNCLAPLAKVIHDRFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTVDVSVVDLTVTLAKEASYDEIKAAIKEESEGKLKGILGYTEEDVVSSDFVGDSRSSIFDAKAGIALSKKFVKIVAWYDNEWGYSSRVVDL 329          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.126e-33
Identity = 77/199 (38.69%), Postives = 101/199 (50.75%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 594
            P +V GVN   YK D  I+SNASCTTNC AP  KV++ +FGI++G MTT H+ T  Q                   NI+P+ST                  G+A RVPT +          +K    E++ AA +E ++  LKGIL   DE LVS DF+               + D+ VK+++WYDNEWGYS RVVDL
Sbjct:   99 PMFVCGVNEKEYKSDIDIVSNASCTTNCPAPLAKVINDRFGIVEGLMTTVHAMTATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTVDVSVVDLTVRLAKPATYEQIKAAIKEESEGNLKGILGYVDEDLVSTDFQGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVDL 297          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3PC_MESCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Mesembryanthemum crystallinum GN=GAPC PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.083e-33
Identity = 77/199 (38.69%), Postives = 102/199 (51.26%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 594
            P +VVGVN   YK D  I+SNASCTTNCLAP  KV++ +FGI++G MTT H+ T  Q                   NI+P+ST                  G+A RVPT +           K    E++ AA +E ++ +LKGIL   ++ LVS DF                + D+ VK+++WYDNEWGYS RVVDL
Sbjct:  131 PMFVVGVNEHEYKSDLNIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAMTATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTCDVSVVDLTVRIEKAASYEQIKAAIKEESEGKLKGILGYTEDDLVSTDFIGDNRSSIFDAKAGISLNDNFVKLVSWYDNEWGYSTRVVDL 329          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P2_RHOSH (Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhodobacter sphaeroides GN=gapB PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.083e-33
Identity = 77/198 (38.89%), Postives = 98/198 (49.49%), Query Frame = 1
Query:    4 TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 597
            T V GVN      D+ ++SNASCTTNCL+P  KVL    GI KG MTT HSYTGDQ                  +++PTST                 +G+++RVPTPN          ++ T  EEVNAA   +A   LKG+L    EP VS DF                M   MV++++WYDNEWG+S R+ D A
Sbjct:  129 TIVYGVNHATLTADDLVVSNASCTTNCLSPVAKVLHDAIGIAKGFMTTIHSYTGDQPTLDTMHKDLYRARAAALSMIPTSTGAAKAVGLVLPELKGRLDGVSIRVPTPNVSVVDLVFEAARDTTVEEVNAAIEAAACGPLKGVLGFTTEPNVSSDFNHDPHSSVFHMDQTKVMEGRMVRILSWYDNEWGFSNRMADTA 326          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P_USTMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ustilago maydis GN=GAPD PE=3 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.332e-33
Identity = 77/208 (37.02%), Postives = 103/208 (49.52%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVATTGS 621
            P YV GVN DAY P   ++SNASCTTNCLAP  KV+  KFGI++G MTT H+ T  Q                   NI+P+ST                  G+A RVPT N           K    +E+ A  + +++NELKGIL   ++ +VS DF                + ++ VK+++WYDNEWGYS R +DL   +A   S
Sbjct:  129 PMYVCGVNLDAYDPKAQVVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHATTATQKTVDGPSAKDWRGGRAAAANIIPSSTGAAKAVGKVIPSLNGKLTGMAFRVPTTNVSVVDLTARLEKGASYDEIKAEVKRASENELKGILGYTEDAVVSQDFIGNSHSSIFDAAAGISLNNNFVKLVSWYDNEWGYSNRCLDLLVFMAQKDS 336          
The following BLAST results are available for this feature:
BLAST of CK740143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3P_PARBA8.226e-3437.75Glyceraldehyde-3-phosphate dehydrogenase OS=Paraco... [more]
G3P2_DROPS1.074e-3339.20Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P_YARLI1.403e-3340.49Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3PC_ANTMA1.403e-3338.69Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_DIACA1.833e-3338.19Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_CRAPL1.833e-3338.69Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_HORVU3.126e-3338.69Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MESCR4.083e-3338.69Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_RHOSH4.083e-3338.89Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhod... [more]
G3P_USTMA5.332e-3337.02Glyceraldehyde-3-phosphate dehydrogenase OS=Ustila... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6637 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740143 ID=CK740143; Name=CK740143; organism=Citrus sinensis; type=EST; length=654bp
CCAACCTACGTTGTTGGTGTCAATGCGGATGCTTACAAACCAGATGAGCC
CATCATCAGCAATGCTTCTTGCACAACCAACTGCCTTGCCCCATTCGTCA
AGGTTCTTGACCAGAAGTTTGGCATTATCAAGGGAACCATGACCACCACA
CACTCGTACACTGGCGACCAAAGACTACTCGATGCTAGCCACCGTGACCT
CAGGCGTGCAAGAGCAGCTGCACTCAACATTGTCCCAACATCAACTGGTG
CGGCAAAAGCTGTGGCCCTTGTCCTCCCAGCACTCAAAGGCAAACTAAAC
GGCATTGCCCTTCGTGTGCCAACACCAAACGTCTCGGTTGTTGATCTTGT
CGTTCAGGTGTCCAAGAAAACCTTCGCAGAAGAGGTGAACGCCGCCTTCA
GAGAAAGCGCTGACAATGAGCTGAAAGGCATCCTCTCCGTGTGCGACGAG
CCCCTTGTTTCGGTCGACTTCAGGTGCTCTGATGTATCCTCAACCGTTGA
TTCATCTCTCACACTTGTCATGGGAGACGACATGGTTAAGGTGATTGCAT
GGTATGACAATGAATGGGGTTACTCTCAAAGGGTTGTGGATTTGGCCGAC
ATTGTTGCCACAACTGGGAGTGAAGTAAATACTAAATCGGAACTCGGCTG
TAAT
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