CK740203

Overview
NameCK740203
Unique NameCK740203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length470
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK740203 vs. ExPASy Swiss-Prot
Match: CENPA_MOUSE (Histone H3-like centromeric protein A OS=Mus musculus GN=Cenpa PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.448e-12
Identity = 47/116 (40.52%), Postives = 60/116 (51.72%), Query Frame = 3 
Query:   12 RKSAPATGGVKKPH-------RFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 332
            R S+PA G  ++         R R   + L+EI+  QKST+LL RK PF  +VREI + F    D  +                  LFED  L ++HA RVT+ PKDIQL RRIRG
Sbjct:   13 RPSSPAPGPSRQSSSVGSQTLRRRQKFMWLKEIKTLQKSTDLLFRKKPFSMVVREICEKFSRGVDFWWQAQALLALQEAAEAFLIHLFEDAYLLSLHAGRVTLFPKDIQLTRRIRG 128
The following BLAST results are available for this feature:
BLAST of CK740203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
CENPA_MOUSE2.448e-1240.52Histone H3-like centromeric protein A OS=Mus muscu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6698 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740203 ID=CK740203; Name=CK740203; organism=Citrus sinensis; type=EST; length=470bp
CAAAGGCGGCTCGGAAGTCGGCGCCAGCGACGGGAGGAGTGAAGAAGCCT
CACCGTTTTAGGCCAGGAACCGTGGCTTTAAGAGAAATTAGGAAGTACCA
GAAGAGCACTGAGCTTTTGATAAGGAAGCTTCCGTTCCAGAGGCTCGTGA
GAGAAATCGCTCAGGATTTTAAGACCGATCTGAGGTTCCAGAGCAGCGCC
GTTGCGGCTCTTCAAGAAGCTGCTGAGGCTTATCTTGTGGGTCTCTTTGA
AGATACCAATCTCTGCGCCATTCATGCTAAGAGGGTCACTATCATGCCCA
AAGATATTCAGCTTGCTAGGAGGATCAGAGGAGAGAGAGCTTAGTCGATT
AATTGATTTGTATCTAGATCTGATTTGGCTTTTAGCGTTTCAGTTTCTAA
GAAATGGGTATGCAAGATTGTTTTGGAATGTAATGGAAAGTTTGAATCTA
TTGTTACATTTGTTGGGTTT
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