CK740210

Overview
NameCK740210
Unique NameCK740210
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS13_METTH (30S ribosomal protein S13P OS=Methanobacterium thermoautotrophicum GN=rps13p PE=3 SV=1)

HSP 1 Score: 49.2914 bits (116), Expect = 2.391e-18
Identity = 20/51 (39.22%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:   94 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 246
            E+F+H++R+   ++DG + +  ALTSIKG+G+ L+  +   A  D+N+R G
Sbjct:    3 EEFKHMVRIARKDIDGNKTMENALTSIKGVGKALSRAIIMSAGYDLNQRIG 53

HSP 2 Score: 43.1282 bits (100), Expect = 2.391e-18
Identity = 19/42 (45.24%), Postives = 30/42 (71.43%), Query Frame = 3 
Query:  354 GKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 479
            G+   ++ + L+M LR+DL R++K R+++G RH  GL VRGQ
Sbjct:   89 GEDKHLIESDLEMCLREDLNRMRKTRSYKGRRHELGLPVRGQ 130

HSP 3 Score: 40.0466 bits (92), Expect = 2.391e-18
Identity = 15/38 (39.47%), Postives = 24/38 (63.16%), Query Frame = 2 
Query:  245 GELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGK 358
            G LS  E++ L   + NP ++ IP W +NR+ DY+ G+
Sbjct:   53 GYLSDEEIERLEEAIKNPAKYNIPSWMINRRNDYETGE 90
[Close]
BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS13_HYPBU (30S ribosomal protein S13P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps13p PE=3 SV=1)

HSP 1 Score: 47.3654 bits (111), Expect = 1.893e-17
Identity = 19/54 (35.19%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:   85 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 246
            ++ + +++I+R+L T++ G  K+ + L  +KGIG  LA  +C+   +D NKR G
Sbjct:    2 LSEQQYRYIVRILGTDIPGDLKVPYGLALVKGIGVNLAYALCRLLGIDPNKRIG 55

HSP 2 Score: 41.2022 bits (95), Expect = 1.893e-17
Identity = 22/48 (45.83%), Postives = 31/48 (64.58%), Query Frame = 3 
Query:  336 RKITKMGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 479
            RK  + GK   +V   L   ++ D+ER K+IR+ RG+RH  GL+VRGQ
Sbjct:   85 RKDYETGKDLHLVGADLIYYVKRDIEREKRIRSWRGIRHALGLKVRGQ 132

HSP 3 Score: 40.817 bits (94), Expect = 1.893e-17
Identity = 18/38 (47.37%), Postives = 25/38 (65.79%), Query Frame = 2 
Query:  245 GELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGK 358
            G L+ AE++ +   +ANP    IP W LNR+KDY+ GK
Sbjct:   55 GFLTDAEIEKIEKAMANPLAIGIPVWMLNRRKDYETGK 92
[Close]
BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS13_PYRHO (30S ribosomal protein S13P OS=Pyrococcus horikoshii GN=rps13p PE=3 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 2.458e-17
Identity = 22/50 (44.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:   97 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 246
            DF+HI+RV   ++DG +++ +ALT+IKG+G   A +VC+ A +D   +AG
Sbjct:    3 DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAG 52

HSP 2 Score: 46.595 bits (109), Expect = 2.458e-17
Identity = 21/42 (50.00%), Postives = 31/42 (73.81%), Query Frame = 3 
Query:  354 GKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 479
            GK   +++  LDM +R+D+ RL++IR +RG+RH  GL VRGQ
Sbjct:   88 GKDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQ 129

HSP 3 Score: 31.187 bits (69), Expect = 2.458e-17
Identity = 13/38 (34.21%), Postives = 22/38 (57.89%), Query Frame = 2 
Query:  245 GELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGK 358
            G L+  ++  +  ++ +P    IP W +NR KDY+ GK
Sbjct:   52 GYLTDEQVKKIEEILQDPVSHGIPRWAVNRPKDYETGK 89
[Close]
BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS13_PYRFU (30S ribosomal protein S13P OS=Pyrococcus furiosus GN=rps13p PE=3 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 1.161e-16
Identity = 22/50 (44.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:   97 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 246
            +F+HI+RV   ++DG +++ +ALT+IKGIG   A +VC+ A +D   +AG
Sbjct:    3 NFRHIVRVAGVDLDGNKQLRWALTAIKGIGINFATMVCRVAGLDPFMKAG 52

HSP 2 Score: 45.4394 bits (106), Expect = 1.161e-16
Identity = 20/42 (47.62%), Postives = 31/42 (73.81%), Query Frame = 3 
Query:  354 GKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 479
            G+   +++  LDM +R+D+ RL++IR +RG+RH  GL VRGQ
Sbjct:   88 GRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQ 129

HSP 3 Score: 31.5722 bits (70), Expect = 1.161e-16
Identity = 13/38 (34.21%), Postives = 23/38 (60.53%), Query Frame = 2 
Query:  245 GELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGK 358
            G L+  ++  +  ++A+P    IP W +NR KDY+ G+
Sbjct:   52 GYLTDEQVKKIEEILADPVAHGIPRWAVNRPKDYETGR 89
[Close]
BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS13_PYRAB (30S ribosomal protein S13P OS=Pyrococcus abyssi GN=rps13p PE=3 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 1.503e-16
Identity = 22/50 (44.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:   97 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 246
            DF+HI+RV   ++DG +++ +ALT+IKG+G   A +VC+ A +D   +AG
Sbjct:    3 DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAG 52

HSP 2 Score: 45.4394 bits (106), Expect = 1.503e-16
Identity = 20/42 (47.62%), Postives = 31/42 (73.81%), Query Frame = 3 
Query:  354 GKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 479
            G+   +++  LDM +R+D+ RL++IR +RG+RH  GL VRGQ
Sbjct:   88 GRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQ 129

HSP 3 Score: 29.6462 bits (65), Expect = 1.503e-16
Identity = 12/38 (31.58%), Postives = 22/38 (57.89%), Query Frame = 2 
Query:  245 GELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGK 358
            G L+  ++  +  ++ +P    IP W +NR KDY+ G+
Sbjct:   52 GYLTDEQVKKIEEILQDPVAHGIPRWAVNRPKDYETGR 89
[Close]
BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS13_METJA (30S ribosomal protein S13P OS=Methanocaldococcus jannaschii GN=rps13p PE=3 SV=2)

HSP 1 Score: 48.1358 bits (113), Expect = 3.256e-16
Identity = 20/52 (38.46%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:   91 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 246
            N +F++++RV  T++DG +K++ AL  I G+G  +A  + + A +D NK AG
Sbjct:    3 NSEFKYLIRVSRTDLDGNKKLIMALQDIYGVGEAMARAIVRVAKLDPNKLAG 54

HSP 2 Score: 38.891 bits (89), Expect = 3.256e-16
Identity = 20/48 (41.67%), Postives = 30/48 (62.50%), Query Frame = 3 
Query:  336 RKITKMGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 479
            RK    G+   V+ + L +  ++D+ RLK+IR +RG+RH  GL  RGQ
Sbjct:   84 RKDYVTGEDKHVIESDLMIIKQEDINRLKRIRCYRGIRHELGLPCRGQ 131

HSP 3 Score: 38.1206 bits (87), Expect = 3.256e-16
Identity = 16/38 (42.11%), Postives = 24/38 (63.16%), Query Frame = 2 
Query:  245 GELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGK 358
            G L+  E+  +  V+A+P +F IP W  NR+KDY  G+
Sbjct:   54 GYLTEEEVKKIEEVLADPAKFGIPSWMFNRRKDYVTGE 91
[Close]
BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS13_STAMF (30S ribosomal protein S13P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps13p PE=3 SV=1)

HSP 1 Score: 44.2838 bits (103), Expect = 4.215e-16
Identity = 17/50 (34.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:   97 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 246
            ++++I+R+  T++DG  K ++ L  IKG+G  LA  +C++  +D   R G
Sbjct:    6 NYRYIVRIAGTDIDGSLKTVYGLAEIKGVGVNLAYGICRRLGIDPEMRIG 55

HSP 2 Score: 41.5874 bits (96), Expect = 4.215e-16
Identity = 21/48 (43.75%), Postives = 30/48 (62.50%), Query Frame = 3 
Query:  336 RKITKMGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 479
            RK    GK   ++   L   ++ D+ER KKI++ RG+RH  GL+VRGQ
Sbjct:   85 RKDYVTGKDMHLIGAELIFYVKQDIEREKKIKSWRGIRHALGLKVRGQ 132

HSP 3 Score: 38.891 bits (89), Expect = 4.215e-16
Identity = 16/38 (42.11%), Postives = 24/38 (63.16%), Query Frame = 2 
Query:  245 GELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGK 358
            G L+  E+  +  +++NP  + IP W LNR+KDY  GK
Sbjct:   55 GYLTDEEIKRIEDLLSNPSAYDIPSWMLNRRKDYVTGK 92
[Close]
BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS13_PYRKO (30S ribosomal protein S13P OS=Pyrococcus kodakaraensis GN=rps13p PE=3 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 7.086e-16
Identity = 22/51 (43.14%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:   94 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 246
            E+F+HI+RV   ++DG +++ +ALT IKGIG   A +V + A +D   +AG
Sbjct:    3 ENFRHIVRVAGVDIDGHKQVRWALTGIKGIGINFATMVLRVAGIDPFMKAG 53

HSP 2 Score: 42.3578 bits (98), Expect = 7.086e-16
Identity = 20/42 (47.62%), Postives = 29/42 (69.05%), Query Frame = 3 
Query:  354 GKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 479
            GK   +++  L M  R+D+ RL++IR +RG+RH  GL VRGQ
Sbjct:   89 GKDMHLITAKLVMAWREDVNRLRRIRAYRGIRHELGLPVRGQ 130

HSP 3 Score: 32.7278 bits (73), Expect = 7.086e-16
Identity = 14/38 (36.84%), Postives = 23/38 (60.53%), Query Frame = 2 
Query:  245 GELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGK 358
            G L+  ++  +  ++A+P    IP W +NR KDY+ GK
Sbjct:   53 GYLTDEQVKKIEEILADPVAHGIPAWAVNRPKDYETGK 90
[Close]
BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS13_PICTO (30S ribosomal protein S13P OS=Picrophilus torridus GN=rps13p PE=3 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 1.512e-15
Identity = 22/52 (42.31%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:   91 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 246
            NE+FQ+I+R+ N +++G++ +  AL  +KGIG RL+  + KK D+D ++R G
Sbjct:    8 NENFQYIVRIANKDLNGERPLKLALADLKGIGLRLSETIAKKLDLDPDQRIG 59

HSP 2 Score: 50.0618 bits (118), Expect = 1.512e-15
Identity = 22/48 (45.83%), Postives = 35/48 (72.92%), Query Frame = 3 
Query:  336 RKITKMGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 479
            R+    GK   +VSN LD+++ DD+  +KK+R+++G+RH  GL+VRGQ
Sbjct:   89 RRDITTGKDFNLVSNDLDLQINDDINLMKKMRSYKGIRHERGLKVRGQ 136
[Close]
BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS13_METAC (30S ribosomal protein S13P OS=Methanosarcina acetivorans GN=rps13p PE=3 SV=2)

HSP 1 Score: 51.6026 bits (122), Expect = 2.005e-14
Identity = 19/46 (41.30%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:   91 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVD 228
            NE+ +H++R++NT++ G + + +ALT + G+GRR A ++ K A VD
Sbjct:   17 NEELRHLVRIMNTDLQGAKPVQYALTGLPGVGRRTAKLIAKGAGVD 62

HSP 2 Score: 41.2022 bits (95), Expect = 2.005e-14
Identity = 18/42 (42.86%), Postives = 28/42 (66.67%), Query Frame = 3 
Query:  354 GKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 479
            G+   ++   + +  R+D+  LKK+R +RGLRH  GL+VRGQ
Sbjct:  103 GQDKHLLGTDILLTFREDINNLKKVRAYRGLRHERGLKVRGQ 144

HSP 3 Score: 26.1794 bits (56), Expect = 2.005e-14
Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = 2 
Query:  311 IPDWFLNRQKDYKDGK 358
            +P W LNRQKD   G+
Sbjct:   89 VPSWMLNRQKDLATGQ 104
The following BLAST results are available for this feature:
BLAST of CK740210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
RS13_METTH2.391e-1839.2230S ribosomal protein S13P OS=Methanobacterium the... [more]
RS13_HYPBU1.893e-1735.1930S ribosomal protein S13P OS=Hyperthermus butylic... [more]
RS13_PYRHO2.458e-1744.0030S ribosomal protein S13P OS=Pyrococcus horikoshi... [more]
RS13_PYRFU1.161e-1644.0030S ribosomal protein S13P OS=Pyrococcus furiosus ... [more]
RS13_PYRAB1.503e-1644.0030S ribosomal protein S13P OS=Pyrococcus abyssi GN... [more]
RS13_METJA3.256e-1638.4630S ribosomal protein S13P OS=Methanocaldococcus j... [more]
RS13_STAMF4.215e-1634.0030S ribosomal protein S13P OS=Staphylothermus mari... [more]
RS13_PYRKO7.086e-1643.1430S ribosomal protein S13P OS=Pyrococcus kodakarae... [more]
RS13_PICTO1.512e-1542.3130S ribosomal protein S13P OS=Picrophilus torridus... [more]
RS13_METAC2.005e-1441.3030S ribosomal protein S13P OS=Methanosarcina aceti... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6705 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740210 ID=CK740210; Name=CK740210; organism=Citrus sinensis; type=EST; length=649bp
CTTGGATACTTGCTGCAGCTTCATTTGTAGCCGAAGAGCCTCTCTTCTCT
TCATCATCAATCCTCACAATCGAAAATGTCTCTGGTGGCGAACGAAGATT
TTCAGCACATTTTGCGTGTGCTGAACACTAACGTCGACGGGAAGCAGAAG
ATTATGTTTGCTCTTACTTCAATTAAGGGTATTGGAAGGCGACTGGCTAA
CATCGTTTGCAAGAAAGCTGATGTTGACATGAACAAGAGGGCCGGGTGAA
CTATCTGCTGCTGAACTTGACAATCTCATGGTCGTTGTTGCAAATCCCCG
ACAGTTTAAAATCCCTGATTGGTTCTTGAACAGACAGAAAGATTACAAAG
ATGGGAAAGTATTCTCAGGTTGTATCCAATGCACTGGACATGAAGTTGAG
AGATGATTTGGAGCGTCTGAAGAAGATCAGGAACCACCGTGGTCTCAGGC
ACTACTGGGGTCTTCGTGTCCGGGGACAACACACCAAGACCACCGGTCGT
CGTGGAAAGACTGGTTGGTGTCTCCAAGAAGCGTTGAGCTGTCCGTTATC
AATGTTTTGAACAATCTATACACATGTTCAGGAAGAGTTTGGACTTGCTA
TTGCTGAACATTTGCATCAGACAATATTAGATTTATTTTCTTTTCTTTG
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