CK740210
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS13_ARCFU (30S ribosomal protein S13P OS=Archaeoglobus fulgidus GN=rps13p PE=3 SV=1) HSP 1 Score: 50.0618 bits (118), Expect = 9.775e-12 Identity = 22/49 (44.90%), Postives = 33/49 (67.35%), Query Frame = 1 Query: 100 FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 246 F+HI+R+ +T++DG + +MFALT IKGIG R A + + VD + G Sbjct: 3 FKHIVRIADTDLDGNKSLMFALTGIKGIGLRAARCIVNELGVDGRAKLG 51 HSP 2 Score: 35.8094 bits (81), Expect = 9.775e-12 Identity = 19/48 (39.58%), Postives = 29/48 (60.42%), Query Frame = 3 Query: 336 RKITKMGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 479 RK G+ ++S +D D+ERL K++ +RG+RH G +VRGQ Sbjct: 80 RKDPYSGQDLHLLSKDVDFARMLDIERLIKMKAYRGVRHARGKKVRGQ 127 HSP 3 Score: 23.8682 bits (50), Expect = 9.775e-12 Identity = 12/38 (31.58%), Postives = 19/38 (50.00%), Query Frame = 2 Query: 245 GELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGK 358 GEL ++ + V + +P W LNR+KD G+ Sbjct: 51 GELDDETIEKVKKFVEEEIE-SLPSWLLNRRKDPYSGQ 87
BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS13_HALMA (30S ribosomal protein S13P OS=Haloarcula marismortui GN=rps13p PE=3 SV=1) HSP 1 Score: 46.2098 bits (108), Expect = 1.230e-11 Identity = 20/45 (44.44%), Postives = 31/45 (68.89%), Query Frame = 1 Query: 94 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVD 228 ED ++ +R+ T++DG + + ALT + GIG R A I+ +KADVD Sbjct: 18 EDIRYFVRIGQTDLDGTKSVERALTELNGIGHRAARIIAQKADVD 62 HSP 2 Score: 37.7354 bits (86), Expect = 1.230e-11 Identity = 17/42 (40.48%), Postives = 26/42 (61.90%), Query Frame = 3 Query: 354 GKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 479 G+ + N L + R D+ R+K I ++RG+RH G +VRGQ Sbjct: 103 GETTHETGNDLQLTRRQDINRMKMIDSYRGVRHKRGQKVRGQ 144 HSP 3 Score: 25.409 bits (54), Expect = 1.230e-11 Identity = 8/16 (50.00%), Postives = 11/16 (68.75%), Query Frame = 2 Query: 311 IPDWFLNRQKDYKDGK 358 +P+W N QKDY G+ Sbjct: 89 VPEWMTNHQKDYFTGE 104
BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS13_THEVO (30S ribosomal protein S13P OS=Thermoplasma volcanium GN=rps13p PE=3 SV=1) HSP 1 Score: 46.2098 bits (108), Expect = 1.432e-11 Identity = 19/52 (36.54%), Postives = 36/52 (69.23%), Query Frame = 1 Query: 91 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 246 N+DFQ+I+R+ N +++G++ I AL+ +KGIG RL + ++ ++ K+ G Sbjct: 25 NKDFQYIVRIANKDLNGERPIPLALSDLKGIGLRLGYAIAERLNLQPTKKIG 76 HSP 2 Score: 43.5134 bits (101), Expect = 1.432e-11 Identity = 18/42 (42.86%), Postives = 32/42 (76.19%), Query Frame = 3 Query: 354 GKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 479 GK +V+ LD+++++D+ +KKIR+++G+RH G +VRGQ Sbjct: 111 GKNLNLVTTDLDVQVQEDINLMKKIRSYKGIRHEKGKKVRGQ 152
BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS13_PYRIL (30S ribosomal protein S13P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps13p PE=3 SV=1) HSP 1 Score: 40.817 bits (94), Expect = 2.091e-11 Identity = 15/46 (32.61%), Postives = 33/46 (71.74%), Query Frame = 1 Query: 91 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVD 228 +++ + I+R+ +T++DG +++ ++LT I+GIG A +C+K +D Sbjct: 2 SQEIRAIVRIGDTDLDGNKQVAYSLTKIRGIGIATAYAICRKLGID 47 HSP 2 Score: 37.7354 bits (86), Expect = 2.091e-11 Identity = 17/48 (35.42%), Postives = 31/48 (64.58%), Query Frame = 3 Query: 336 RKITKMGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 479 RK + GK ++ L + + D++ +KK+++ +G+RH GL+VRGQ Sbjct: 82 RKDPETGKDLHLIGAELVLAAKRDVDLMKKLKSWKGVRHSLGLKVRGQ 129 HSP 3 Score: 30.0314 bits (66), Expect = 2.091e-11 Identity = 16/38 (42.11%), Postives = 22/38 (57.89%), Query Frame = 2 Query: 245 GELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGK 358 G LS +++ L V N + P WFLNR+KD + GK Sbjct: 53 GALSEEQINKLDWAVRNLHELA-PAWFLNRRKDPETGK 89
BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS13_METMJ (30S ribosomal protein S13P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps13p PE=3 SV=1) HSP 1 Score: 39.6614 bits (91), Expect = 4.540e-11 Identity = 17/42 (40.48%), Postives = 28/42 (66.67%), Query Frame = 3 Query: 354 GKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 479 G+ ++ L M DD+ R++K+R++RG+RH G +VRGQ Sbjct: 89 GEVRHLLGTDLTMMNDDDVNRMRKMRSYRGIRHETGQKVRGQ 130 HSP 2 Score: 38.891 bits (89), Expect = 4.540e-11 Identity = 18/45 (40.00%), Postives = 28/45 (62.22%), Query Frame = 1 Query: 94 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVD 228 E+ ++ +RV NT++DG + + ALT IKGIG + + A VD Sbjct: 4 EEIKYFVRVRNTDLDGTKAVHIALTGIKGIGPHTSRTITALAAVD 48 HSP 3 Score: 28.8758 bits (63), Expect = 4.540e-11 Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 2 Query: 308 KIPDWFLNRQKDYKDGKV 361 ++PDW +NRQKD G+V Sbjct: 74 QVPDWMVNRQKDVYTGEV 91 The following BLAST results are available for this feature:
BLAST of CK740210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 45
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Sequences
The
following sequences are available for this feature:
EST sequence >CK740210 ID=CK740210; Name=CK740210; organism=Citrus sinensis; type=EST; length=649bpback to top |