CK740210

Overview
NameCK740210
Unique NameCK740210
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS13_ARCFU (30S ribosomal protein S13P OS=Archaeoglobus fulgidus GN=rps13p PE=3 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 9.775e-12
Identity = 22/49 (44.90%), Postives = 33/49 (67.35%), Query Frame = 1
Query:  100 FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 246
            F+HI+R+ +T++DG + +MFALT IKGIG R A  +  +  VD   + G
Sbjct:    3 FKHIVRIADTDLDGNKSLMFALTGIKGIGLRAARCIVNELGVDGRAKLG 51          

HSP 2 Score: 35.8094 bits (81), Expect = 9.775e-12
Identity = 19/48 (39.58%), Postives = 29/48 (60.42%), Query Frame = 3
Query:  336 RKITKMGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 479
            RK    G+   ++S  +D     D+ERL K++ +RG+RH  G +VRGQ
Sbjct:   80 RKDPYSGQDLHLLSKDVDFARMLDIERLIKMKAYRGVRHARGKKVRGQ 127          

HSP 3 Score: 23.8682 bits (50), Expect = 9.775e-12
Identity = 12/38 (31.58%), Postives = 19/38 (50.00%), Query Frame = 2
Query:  245 GELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGK 358
            GEL    ++ +   V    +  +P W LNR+KD   G+
Sbjct:   51 GELDDETIEKVKKFVEEEIE-SLPSWLLNRRKDPYSGQ 87          
BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS13_HALMA (30S ribosomal protein S13P OS=Haloarcula marismortui GN=rps13p PE=3 SV=1)

HSP 1 Score: 46.2098 bits (108), Expect = 1.230e-11
Identity = 20/45 (44.44%), Postives = 31/45 (68.89%), Query Frame = 1
Query:   94 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVD 228
            ED ++ +R+  T++DG + +  ALT + GIG R A I+ +KADVD
Sbjct:   18 EDIRYFVRIGQTDLDGTKSVERALTELNGIGHRAARIIAQKADVD 62          

HSP 2 Score: 37.7354 bits (86), Expect = 1.230e-11
Identity = 17/42 (40.48%), Postives = 26/42 (61.90%), Query Frame = 3
Query:  354 GKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 479
            G+ +    N L +  R D+ R+K I ++RG+RH  G +VRGQ
Sbjct:  103 GETTHETGNDLQLTRRQDINRMKMIDSYRGVRHKRGQKVRGQ 144          

HSP 3 Score: 25.409 bits (54), Expect = 1.230e-11
Identity = 8/16 (50.00%), Postives = 11/16 (68.75%), Query Frame = 2
Query:  311 IPDWFLNRQKDYKDGK 358
            +P+W  N QKDY  G+
Sbjct:   89 VPEWMTNHQKDYFTGE 104          
BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS13_THEVO (30S ribosomal protein S13P OS=Thermoplasma volcanium GN=rps13p PE=3 SV=1)

HSP 1 Score: 46.2098 bits (108), Expect = 1.432e-11
Identity = 19/52 (36.54%), Postives = 36/52 (69.23%), Query Frame = 1
Query:   91 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 246
            N+DFQ+I+R+ N +++G++ I  AL+ +KGIG RL   + ++ ++   K+ G
Sbjct:   25 NKDFQYIVRIANKDLNGERPIPLALSDLKGIGLRLGYAIAERLNLQPTKKIG 76          

HSP 2 Score: 43.5134 bits (101), Expect = 1.432e-11
Identity = 18/42 (42.86%), Postives = 32/42 (76.19%), Query Frame = 3
Query:  354 GKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 479
            GK   +V+  LD+++++D+  +KKIR+++G+RH  G +VRGQ
Sbjct:  111 GKNLNLVTTDLDVQVQEDINLMKKIRSYKGIRHEKGKKVRGQ 152          
BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS13_PYRIL (30S ribosomal protein S13P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps13p PE=3 SV=1)

HSP 1 Score: 40.817 bits (94), Expect = 2.091e-11
Identity = 15/46 (32.61%), Postives = 33/46 (71.74%), Query Frame = 1
Query:   91 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVD 228
            +++ + I+R+ +T++DG +++ ++LT I+GIG   A  +C+K  +D
Sbjct:    2 SQEIRAIVRIGDTDLDGNKQVAYSLTKIRGIGIATAYAICRKLGID 47          

HSP 2 Score: 37.7354 bits (86), Expect = 2.091e-11
Identity = 17/48 (35.42%), Postives = 31/48 (64.58%), Query Frame = 3
Query:  336 RKITKMGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 479
            RK  + GK   ++   L +  + D++ +KK+++ +G+RH  GL+VRGQ
Sbjct:   82 RKDPETGKDLHLIGAELVLAAKRDVDLMKKLKSWKGVRHSLGLKVRGQ 129          

HSP 3 Score: 30.0314 bits (66), Expect = 2.091e-11
Identity = 16/38 (42.11%), Postives = 22/38 (57.89%), Query Frame = 2
Query:  245 GELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGK 358
            G LS  +++ L   V N  +   P WFLNR+KD + GK
Sbjct:   53 GALSEEQINKLDWAVRNLHELA-PAWFLNRRKDPETGK 89          
BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS13_METMJ (30S ribosomal protein S13P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps13p PE=3 SV=1)

HSP 1 Score: 39.6614 bits (91), Expect = 4.540e-11
Identity = 17/42 (40.48%), Postives = 28/42 (66.67%), Query Frame = 3
Query:  354 GKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 479
            G+   ++   L M   DD+ R++K+R++RG+RH  G +VRGQ
Sbjct:   89 GEVRHLLGTDLTMMNDDDVNRMRKMRSYRGIRHETGQKVRGQ 130          

HSP 2 Score: 38.891 bits (89), Expect = 4.540e-11
Identity = 18/45 (40.00%), Postives = 28/45 (62.22%), Query Frame = 1
Query:   94 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVD 228
            E+ ++ +RV NT++DG + +  ALT IKGIG   +  +   A VD
Sbjct:    4 EEIKYFVRVRNTDLDGTKAVHIALTGIKGIGPHTSRTITALAAVD 48          

HSP 3 Score: 28.8758 bits (63), Expect = 4.540e-11
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  308 KIPDWFLNRQKDYKDGKV 361
            ++PDW +NRQKD   G+V
Sbjct:   74 QVPDWMVNRQKDVYTGEV 91          
The following BLAST results are available for this feature:
BLAST of CK740210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
RS13_ARCFU9.775e-1244.9030S ribosomal protein S13P OS=Archaeoglobus fulgid... [more]
RS13_HALMA1.230e-1144.4430S ribosomal protein S13P OS=Haloarcula marismort... [more]
RS13_THEVO1.432e-1136.5430S ribosomal protein S13P OS=Thermoplasma volcani... [more]
RS13_PYRIL2.091e-1132.6130S ribosomal protein S13P OS=Pyrobaculum islandic... [more]
RS13_METMJ4.540e-1140.4830S ribosomal protein S13P OS=Methanoculleus maris... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6705 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740210 ID=CK740210; Name=CK740210; organism=Citrus sinensis; type=EST; length=649bp
CTTGGATACTTGCTGCAGCTTCATTTGTAGCCGAAGAGCCTCTCTTCTCT
TCATCATCAATCCTCACAATCGAAAATGTCTCTGGTGGCGAACGAAGATT
TTCAGCACATTTTGCGTGTGCTGAACACTAACGTCGACGGGAAGCAGAAG
ATTATGTTTGCTCTTACTTCAATTAAGGGTATTGGAAGGCGACTGGCTAA
CATCGTTTGCAAGAAAGCTGATGTTGACATGAACAAGAGGGCCGGGTGAA
CTATCTGCTGCTGAACTTGACAATCTCATGGTCGTTGTTGCAAATCCCCG
ACAGTTTAAAATCCCTGATTGGTTCTTGAACAGACAGAAAGATTACAAAG
ATGGGAAAGTATTCTCAGGTTGTATCCAATGCACTGGACATGAAGTTGAG
AGATGATTTGGAGCGTCTGAAGAAGATCAGGAACCACCGTGGTCTCAGGC
ACTACTGGGGTCTTCGTGTCCGGGGACAACACACCAAGACCACCGGTCGT
CGTGGAAAGACTGGTTGGTGTCTCCAAGAAGCGTTGAGCTGTCCGTTATC
AATGTTTTGAACAATCTATACACATGTTCAGGAAGAGTTTGGACTTGCTA
TTGCTGAACATTTGCATCAGACAATATTAGATTTATTTTCTTTTCTTTG
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