CK740226

Overview
NameCK740226
Unique NameCK740226
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740226 vs. ExPASy Swiss-Prot
Match: GDIB_HUMAN (Rab GDP dissociation inhibitor beta OS=Homo sapiens GN=GDI2 PE=1 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 1.956e-60
Identity = 95/161 (59.01%), Postives = 126/161 (78.26%), Query Frame = 2
Query:   92 PKHTEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVSSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTND 574
            P+  EG+D  + T R++  K+ L  + IDF GHALAL+R D YL++P  +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP  ++   + GKV+GV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND
Sbjct:  155 PRTFEGIDPKKTTMRDVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEI-IVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTND 313          

HSP 2 Score: 52.7582 bits (125), Expect = 1.956e-60
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 1
Query:    1 EALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHRG 108
            EAL S LMG+FEKRR RKF +YV ++DE DP+T  G
Sbjct:  125 EALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEG 160          
BLAST of CK740226 vs. ExPASy Swiss-Prot
Match: GDIB_PIG (Rab GDP dissociation inhibitor beta OS=Sus scrofa GN=GDI2 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.551e-60
Identity = 94/161 (58.39%), Postives = 125/161 (77.64%), Query Frame = 2
Query:   92 PKHTEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVSSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTND 574
            P+  EG+D  +   RE+  K+ L  + IDF GHALAL+R D YL++P  +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP  ++   + GKV+GV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NT+D
Sbjct:  155 PRTFEGVDPKKTAMREVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEI-IVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTSD 313          

HSP 2 Score: 55.0694 bits (131), Expect = 2.551e-60
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1
Query:    1 EALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHRG 108
            EAL S LMG+FEKRR RKF +YV ++DENDP+T  G
Sbjct:  125 EALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEG 160          
BLAST of CK740226 vs. ExPASy Swiss-Prot
Match: GDIB_RAT (Rab GDP dissociation inhibitor beta OS=Rattus norvegicus GN=Gdi2 PE=1 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 9.611e-60
Identity = 94/161 (58.39%), Postives = 126/161 (78.26%), Query Frame = 2
Query:   92 PKHTEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVSSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTND 574
            P+  EG+D  + + R++  K+ L  + IDF GH+LAL+R D YL++P  +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP  ++   + GKVVGV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND
Sbjct:  155 PRTFEGVDPKKTSMRDVYKKFDLGQDVIDFTGHSLALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEI-IVQNGKVVGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTND 313          

HSP 2 Score: 52.7582 bits (125), Expect = 9.611e-60
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 1
Query:    1 EALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHRG 108
            EAL S LMG+FEKRR RKF +YV ++DE DP+T  G
Sbjct:  125 EALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEG 160          
BLAST of CK740226 vs. ExPASy Swiss-Prot
Match: GDIB_MOUSE (Rab GDP dissociation inhibitor beta OS=Mus musculus GN=Gdi2 PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 9.611e-60
Identity = 94/161 (58.39%), Postives = 126/161 (78.26%), Query Frame = 2
Query:   92 PKHTEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVSSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTND 574
            P+  EG+D  + + R++  K+ L  + IDF GH+LAL+R D YL++P  +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP  ++   + GKVVGV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND
Sbjct:  155 PRTFEGVDPKKTSMRDVYKKFDLGQDVIDFTGHSLALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEI-IVQNGKVVGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTND 313          

HSP 2 Score: 52.7582 bits (125), Expect = 9.611e-60
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 1
Query:    1 EALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHRG 108
            EAL S LMG+FEKRR RKF +YV ++DE DP+T  G
Sbjct:  125 EALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEG 160          
BLAST of CK740226 vs. ExPASy Swiss-Prot
Match: GDIB_CANFA (Rab GDP dissociation inhibitor beta OS=Canis familiaris GN=GDI2 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 1.634e-59
Identity = 94/161 (58.39%), Postives = 124/161 (77.02%), Query Frame = 2
Query:   92 PKHTEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVSSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTND 574
            P+  EG+D  +    E+  K+ L  + IDF GHALAL+R D YL++P  +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP  ++   + GKV+GV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND
Sbjct:  155 PRTFEGIDPKKTAIGEVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEI-IVQNGKVIGVKSEGEVARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTND 313          

HSP 2 Score: 52.7582 bits (125), Expect = 1.634e-59
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 1
Query:    1 EALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHRG 108
            EAL S LMG+FEKRR RKF +YV ++DE DP+T  G
Sbjct:  125 EALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEG 160          
BLAST of CK740226 vs. ExPASy Swiss-Prot
Match: GDI1_YEAST (Rab GDP-dissociation inhibitor OS=Saccharomyces cerevisiae GN=GDI1 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 9.066e-48
Identity = 80/159 (50.31%), Postives = 115/159 (72.33%), Query Frame = 2
Query:  104 EGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEE-GKVVGVSSEGETAKCKKVVCDPSYLPNKVRKVG-RVARAIAIMSHPIPNTND 574
            +G+DL + T  E+  K+GL ++T +FIGHA+AL  +D YL +PA  + +R+ LY +S+AR+ G SPY+YP+YGLGELPQ FARLSA+YGGTYML+ P  +V + ++ GK  GV ++  T K   V+ DP+Y P K +  G RV RAI I++HP+PNT++
Sbjct:  167 QGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARY-GKSPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEKCKSTGQRVIRAICILNHPVPNTSN 324          

HSP 2 Score: 51.9878 bits (123), Expect = 9.066e-48
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 1
Query:    1 EALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHRGNGLDQ 123
            EA+ SPLMGIFEKRR +KF  ++  Y E+D  TH+G  LD+
Sbjct:  133 EAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDK 173          
BLAST of CK740226 vs. ExPASy Swiss-Prot
Match: GDI1_SCHPO (Probable secretory pathway GDP dissociation inhibitor 1 OS=Schizosaccharomyces pombe GN=gdi1 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.698e-45
Identity = 87/161 (54.04%), Postives = 118/161 (73.29%), Query Frame = 2
Query:   92 PKHTEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVSSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTND 574
            P   + +++ R +   +  K+GL   T DFIGHA+AL+ DD YL +PA +T +R+ LYA SIA+F G SPYIYPLYGLGELPQ FARLSA+YGGTYMLN+P  ++ + ++G  +GV S  + AK K+++ DPSY   KVR VGR+ RAI I++HPIPNT++
Sbjct:  154 PSTYKDINIDRDSMESVFKKFGLQSGTQDFIGHAMALYLDDAYLKKPARETRERILLYASSIAKF-GKSPYIYPLYGLGELPQGFARLSAIYGGTYMLNQPVDEIVYGDDGVAIGVRSGDQVAKAKQIIGDPSYFREKVRSVGRLVRAICILNHPIPNTDN 313          
BLAST of CK740226 vs. ExPASy Swiss-Prot
Match: RABEP_DROME (Rab proteins geranylgeranyltransferase component A OS=Drosophila melanogaster GN=Rep PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.085e-13
Identity = 39/109 (35.78%), Postives = 60/109 (55.05%), Query Frame = 2
Query:  245 VKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVSSEGETAKCKKVVCDPSYLP--NKVRKVGRVARAIAIMSHPIPN 565
            ++R + +  S+ R+ G +P+++P+YG GELPQ F RL AVYGG Y L +    +  D       +SS G+T + K VV  P Y P    +     ++R + I S P+ N
Sbjct:  231 MQRTQRFLGSLGRY-GNTPFLFPMYGCGELPQCFCRLCAVYGGIYCLKRAVDDIALDSNSNEFLLSSAGKTLRAKNVVSAPGYTPVSKGIELKPHISRGLFISSSPLGN 338          
BLAST of CK740226 vs. ExPASy Swiss-Prot
Match: RAE2_MOUSE (Rab proteins geranylgeranyltransferase component A 2 OS=Mus musculus GN=Chml PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.297e-12
Identity = 47/161 (29.19%), Postives = 82/161 (50.93%), Query Frame = 2
Query:  104 EGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYML-NKPECKVEFDEEGKVVG-VSSEGETAKCKKVVCDPSYLPNKV---RKVGRVARAIAIMSHPIPNTN 571
            E  D  + +  + +    L  N   FI H++A+  +        LD ++  K + + + RF G +P+I+PLYG GE+PQ F R+ AV+GG Y L +K +C V   + G+  G + + G+       + + SYLP +     +  +++RA+ I    I  T+
Sbjct:  312 EYQDFKQCSFSDYLKTKKLTPNLQHFILHSIAMTSESSCTT---LDGLQATKNFLQCLGRF-GNTPFIFPLYGHGEIPQCFCRMCAVFGGVYCLRHKVQCLVVDKDSGRCKGIIDAFGQRISANYFIVEDSYLPKETCSNVQYKQISRAVLITDQSILKTD 468          

HSP 2 Score: 21.557 bits (44), Expect = 1.297e-12
Identity = 8/29 (27.59%), Postives = 15/29 (51.72%), Query Frame = 1
Query:    1 EALKSPLMGIFEKRRARKFFIYVQDYDEN 87
            +   S  + + EKR   KF  +  DY+++
Sbjct:  281 DVFNSKELSMVEKRMLMKFLTFCLDYEQH 309          
The following BLAST results are available for this feature:
BLAST of CK740226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
GDIB_HUMAN1.956e-6059.01Rab GDP dissociation inhibitor beta OS=Homo sapien... [more]
GDIB_PIG2.551e-6058.39Rab GDP dissociation inhibitor beta OS=Sus scrofa ... [more]
GDIB_RAT9.611e-6058.39Rab GDP dissociation inhibitor beta OS=Rattus norv... [more]
GDIB_MOUSE9.611e-6058.39Rab GDP dissociation inhibitor beta OS=Mus musculu... [more]
GDIB_CANFA1.634e-5958.39Rab GDP dissociation inhibitor beta OS=Canis famil... [more]
GDI1_YEAST9.066e-4850.31Rab GDP-dissociation inhibitor OS=Saccharomyces ce... [more]
GDI1_SCHPO2.698e-4554.04Probable secretory pathway GDP dissociation inhibi... [more]
RABEP_DROME2.085e-1335.78Rab proteins geranylgeranyltransferase component A... [more]
RAE2_MOUSE1.297e-1229.19Rab proteins geranylgeranyltransferase component A... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6721 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740226 ID=CK740226; Name=CK740226; organism=Citrus sinensis; type=EST; length=575bp
GAAGCGCTCAAATCTCCACTCATGGGTATTTTTGAGAAGCGCCGTGCACG
CAAGTTTTTCATTTATGTTCAAGATTATGATGAAAATGATCCCAAAACAC
ACCGAGGGAATGGACTTGACCAGGGTGACCACTAGAGAGCTGATTGCGAA
GTATGGTCTTGATGACAACACTATTGACTTCATTGGTCATGCATTGGCAC
TTCATAGAGATGATCGTTACTTAAACGAACCTGCTCTTGATACAGTGAAG
AGAATGAAGTTATACGCAGAGTCTATTGCACGATTTCAAGGAGGATCACC
ATACATTTACCCTCTGTATGGCCTTGGAGAGCTGCCTCAGGCCTTTGCTC
GGCTTAGTGCTGTTTATGGTGGGACGTATATGTTGAATAAACCTGAGTGC
AAGGTAGAGTTTGATGAAGAAGGTAAAGTAGTCGGTGTCTCGTCAGAAGG
GGAAACTGCAAAGTGCAAGAAAGTTGTTTGTGATCCTTCCTATTTGCCCA
ACAAGGTGAGGAAGGTTGGCAGGGTTGCTAGGGCAATCGCTATTATGAGC
CACCCAATCCCAAACACCAATGATT
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