CK740227

Overview
NameCK740227
Unique NameCK740227
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length275
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 9.103e-25
Identity = 58/90 (64.44%), Postives = 63/90 (70.00%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            DIPTYV+GVN   Y  +   IISNASCTTNCLAPF KVLD++FGI+KGTMTTTHSYTGDQ                  NIVPTSTGAAKA
Sbjct:  213 DIPTYVIGVNEQDYGHEVADIISNASCTTNCLAPFAKVLDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKA 302          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.189e-24
Identity = 58/90 (64.44%), Postives = 63/90 (70.00%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            DIPTYVVGVN   Y  +   IISNASCTTNCLAPFVKV+D++ GI+KGTMTTTHSYTGDQ                  NIVPTSTGAAKA
Sbjct:  182 DIPTYVVGVNEQDYSHEVADIISNASCTTNCLAPFVKVMDEELGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKA 271          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P2_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Synechocystis sp. (strain PCC 6803) GN=gap2 PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 7.706e-24
Identity = 58/90 (64.44%), Postives = 63/90 (70.00%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            +I TYVVGVNA  YK +E  +ISNASCTTNCLAPF KV++  FGIIKGTMTTTHSYTGDQ                  NIVPTSTGAAKA
Sbjct:  128 NIGTYVVGVNAHEYKHEEYEVISNASCTTNCLAPFGKVINDNFGIIKGTMTTTHSYTGDQRILDASHRDLRRARAAAVNIVPTSTGAAKA 217          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3PA_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Chondrus crispus GN=GAPA PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.228e-22
Identity = 54/93 (58.06%), Postives = 64/93 (68.82%), Query Frame = 3
Query:    3 KGD-IPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            KGD I T+VVGVN   Y  D+  I+SNASCTTNC+APF+KVLD +FG+++G MTTTHSYTGDQ                  NIVPT+TGAAKA
Sbjct:  202 KGDGIGTFVVGVNEKDYSHDKYDIVSNASCTTNCMAPFMKVLDDEFGVVRGMMTTTHSYTGDQRLLDAGHRDLRRARSAALNIVPTTTGAAKA 294          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3PA_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Gracilaria verrucosa GN=GAPA PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.607e-21
Identity = 52/93 (55.91%), Postives = 64/93 (68.82%), Query Frame = 3
Query:    3 KGD-IPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            KG+ + T+VVGVN   Y  D+  I+SNASCTTNC+APF+KVLD +FG+++G MTTTHSYTGDQ                  NIVPT+TGAAKA
Sbjct:  204 KGEGVGTFVVGVNDHLYSHDKFDIVSNASCTTNCMAPFMKVLDDEFGVVRGMMTTTHSYTGDQRLLDAGHRDLRRARSAALNIVPTTTGAAKA 296          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.106e-21
Identity = 51/91 (56.04%), Postives = 59/91 (64.84%), Query Frame = 3
Query:    6 GDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            GD P +VVGVN DAYKPD  +ISNASCTTNCLAP  KV++ K+GII+G MTT HS T  Q                   NI+P+STGAAKA
Sbjct:  125 GDAPMFVVGVNLDAYKPDMTVISNASCTTNCLAPLAKVVNDKYGIIEGLMTTVHSITATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKA 215          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P2_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap2 PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.106e-21
Identity = 54/92 (58.70%), Postives = 60/92 (65.22%), Query Frame = 3
Query:    3 KGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            K +  T+V+GVN   Y  +   IISNASCTTNCLAP  KVL+ KFGIIKG+MTTTHSYTGDQ                  NIVPTSTGAAKA
Sbjct:  126 KNEDGTFVIGVNHHDYDHNVHHIISNASCTTNCLAPIAKVLNDKFGIIKGSMTTTHSYTGDQRLLDASHRDLRRARAAAINIVPTSTGAAKA 217          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P2_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena sp. (strain PCC 7120) GN=gap2 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.041e-20
Identity = 54/92 (58.70%), Postives = 60/92 (65.22%), Query Frame = 3
Query:    3 KGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            K +  T+V+GVN   Y  +   IISNASCTTNCLAP  KVL+ KFGIIKG+MTTTHSYTGDQ                  NIVPTSTGAAKA
Sbjct:  126 KNEDGTFVMGVNHHDYDHNLHNIISNASCTTNCLAPIAKVLNDKFGIIKGSMTTTHSYTGDQRLLDASHRDLRRARAAAINIVPTSTGAAKA 217          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_MYCTU (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium tuberculosis GN=gap PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.030e-20
Identity = 50/86 (58.14%), Postives = 55/86 (63.95%), Query Frame = 3
Query:   18 TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            T V+GVN D Y   + IISNASCTTNCLAP  KVLD +FGI+KG MTT H+YT DQ                  NIVPTSTGAAKA
Sbjct:  136 TIVLGVNDDKYDGSQNIISNASCTTNCLAPLAKVLDDEFGIVKGLMTTIHAYTQDQNLQDGPHKDLRRARAAALNIVPTSTGAAKA 221          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_MYCBO (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium bovis GN=gap PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.030e-20
Identity = 50/86 (58.14%), Postives = 55/86 (63.95%), Query Frame = 3
Query:   18 TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            T V+GVN D Y   + IISNASCTTNCLAP  KVLD +FGI+KG MTT H+YT DQ                  NIVPTSTGAAKA
Sbjct:  136 TIVLGVNDDKYDGSQNIISNASCTTNCLAPLAKVLDDEFGIVKGLMTTIHAYTQDQNLQDGPHKDLRRARAAALNIVPTSTGAAKA 221          
The following BLAST results are available for this feature:
BLAST of CK740227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 323
Match NameE-valueIdentityDescription
G3PB_PEA9.103e-2564.44Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_TOBAC1.189e-2464.44Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3P2_SYNY37.706e-2464.44Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Syne... [more]
G3PA_CHOCR4.228e-2258.06Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3PA_GRAVE1.607e-2155.91Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3P_YARLI6.106e-2156.04Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3P2_ANAVT6.106e-2158.70Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P2_ANASP1.041e-2058.70Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P_MYCTU3.030e-2058.14Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_MYCBO3.030e-2058.14Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6722 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740227 ID=CK740227; Name=CK740227; organism=Citrus sinensis; type=EST; length=275bp
GCAAGGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGCTTAC
AAACCAGATGAGCCCATCATCAGCAATGCTTCTTGCACAACCAACTGCCT
TGCCCCATTCGTCAAGGTTCTTGACCAGAAGTTTGGCATTATCAAGGGAA
CCATGACCACCACACACTCGTACACTGGCGACCAAAGACTACTCGATGCT
AGCCACCGTGACCTCAGGCGTGCAAGAGCAGCTGCACTCAACATTGTCCC
AACATCAACTGGCGCGGCAAAAGCT
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