CK740227

Overview
NameCK740227
Unique NameCK740227
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length275
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_MYCAV (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium avium GN=gapA PE=3 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 6.751e-20
Identity = 49/86 (56.98%), Postives = 55/86 (63.95%), Query Frame = 3
Query:   18 TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            T V+GVN D Y   + IISNASCTTNCLAP  KVLD +FGI++G MTT H+YT DQ                  NIVPTSTGAAKA
Sbjct:  136 TVVLGVNDDKYDGSQNIISNASCTTNCLAPLTKVLDDEFGIVRGLMTTIHAYTQDQNLQDGPHKDLRRARAAALNIVPTSTGAAKA 221          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_STRCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces coelicolor GN=gap PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.964e-19
Identity = 47/87 (54.02%), Postives = 56/87 (64.37%), Query Frame = 3
Query:   18 TYVVGVNADAYKP-DEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            T V+GVN D Y P +  +ISNASCTTNC+AP  KVLD+ FGI+KG MTT H+YT DQ                  NI+PT+TGAAKA
Sbjct:  130 TIVMGVNQDKYDPANHHVISNASCTTNCVAPMAKVLDENFGIVKGLMTTVHAYTNDQRILDFPHKDLRRARAAAENIIPTTTGAAKA 216          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_MYCLE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium leprae GN=gapA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.350e-19
Identity = 48/86 (55.81%), Postives = 53/86 (61.63%), Query Frame = 3
Query:   18 TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            T V GVN D Y   + IISNASCTTNCLAP  KVL  +FGI+KG MTT H+YT DQ                  N+VPTSTGAAKA
Sbjct:  136 TIVFGVNDDKYDGSQNIISNASCTTNCLAPLAKVLHDQFGIVKGLMTTVHAYTQDQNLQDGPHSDLRRARAAALNVVPTSTGAAKA 221          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_BACST (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus stearothermophilus GN=gap PE=1 SV=5)

HSP 1 Score: 93.2041 bits (230), Expect = 4.376e-19
Identity = 48/92 (52.17%), Postives = 58/92 (63.04%), Query Frame = 3
Query:    3 KGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            K +  T V+GVN D Y P    +ISNASCTTNCLAPF KVL ++FGI++G MTT HSYT DQ                  +I+PT+TGAAKA
Sbjct:  124 KNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKA 215          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P1_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus subtilis GN=gapA PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 4.376e-19
Identity = 49/87 (56.32%), Postives = 55/87 (63.22%), Query Frame = 3
Query:   18 TYVVGVNADAYKP-DEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            T V+GVN D Y   +  +ISNASCTTNCLAPF KVL+ KFGI +G MTT HSYT DQ                  NI+PTSTGAAKA
Sbjct:  129 TIVMGVNEDKYDAANHDVISNASCTTNCLAPFAKVLNDKFGIKRGMMTTVHSYTNDQQILDLPHKDYRRARAAAENIIPTSTGAAKA 215          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_THEMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermotoga maritima GN=gap PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 5.715e-19
Identity = 47/91 (51.65%), Postives = 56/91 (61.54%), Query Frame = 3
Query:    3 KGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            KG+  T V+G N D  KP+  IIS ASCTTN +AP VKVL +KFGI+ G +TT HSYT DQ                  NI+PT+TGAAKA
Sbjct:  125 KGEDITVVIGCNEDQLKPEHTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTVHSYTNDQRVLDLPHKDLRRARAAAVNIIPTTTGAAKA 215          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_CORGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Corynebacterium glutamicum GN=gap PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19
Identity = 48/87 (55.17%), Postives = 55/87 (63.22%), Query Frame = 3
Query:   18 TYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            T+V GVN ++Y P+   +IS ASCTTNCLAP  KVL+ KFGI  G MTT H+YTGDQ                  NIVPTSTGAAKA
Sbjct:  130 TFVYGVNHESYDPENHNVISGASCTTNCLAPMAKVLNDKFGIENGLMTTVHAYTGDQRLHDAPHRDLRRARAAAVNIVPTSTGAAKA 216          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19
Identity = 47/90 (52.22%), Postives = 56/90 (62.22%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +VVGVN   YKPD  I+SNASCTTNCLAP  KV++ +FGI++G MTT HS T  Q                   NI+P+STGAAKA
Sbjct:  132 DAPMFVVGVNEHEYKPDLAIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSNKDWRGGRGAGFNIIPSSTGAAKA 221          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3PC_PEA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pisum sativum GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.273e-18
Identity = 47/90 (52.22%), Postives = 57/90 (63.33%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +VVGVN + YKP+  IISNASCTTNCLAP  KV++ +FGI++G MTT HS T  Q                   NI+P+STGAAKA
Sbjct:  130 DAPMFVVGVNENEYKPEFDIISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKA 219          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P1_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agaricus bisporus GN=gpd1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.663e-18
Identity = 47/89 (52.81%), Postives = 55/89 (61.80%), Query Frame = 3
Query:   12 IPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            +PTYVVGVN D Y P E +ISNASCTTNCLA   KV++ KFGI++G MTT H+ T  Q                   NI+P STGAAKA
Sbjct:  126 VPTYVVGVNLDKYDPKEVVISNASCTTNCLAVLAKVINDKFGIVEGLMTTVHATTATQKTVDAPAKKDWRSGRSVTNNIIPASTGAAKA 214          
The following BLAST results are available for this feature:
BLAST of CK740227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 323
Match NameE-valueIdentityDescription
G3P_MYCAV6.751e-2056.98Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_STRCO1.964e-1954.02Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_MYCLE3.350e-1955.81Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_BACST4.376e-1952.17Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P1_BACSU4.376e-1956.32Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]
G3P_THEMA5.715e-1951.65Glyceraldehyde-3-phosphate dehydrogenase OS=Thermo... [more]
G3P_CORGL9.748e-1955.17Glyceraldehyde-3-phosphate dehydrogenase OS=Coryne... [more]
G3PC_GINBI9.748e-1952.22Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PEA1.273e-1852.22Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_AGABI1.663e-1852.81Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agar... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6722 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740227 ID=CK740227; Name=CK740227; organism=Citrus sinensis; type=EST; length=275bp
GCAAGGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGCTTAC
AAACCAGATGAGCCCATCATCAGCAATGCTTCTTGCACAACCAACTGCCT
TGCCCCATTCGTCAAGGTTCTTGACCAGAAGTTTGGCATTATCAAGGGAA
CCATGACCACCACACACTCGTACACTGGCGACCAAAGACTACTCGATGCT
AGCCACCGTGACCTCAGGCGTGCAAGAGCAGCTGCACTCAACATTGTCCC
AACATCAACTGGCGCGGCAAAAGCT
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