CK740227

Overview
NameCK740227
Unique NameCK740227
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length275
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_MONAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Monascus anka GN=GPD1 PE=3 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 2.172e-18
Identity = 46/90 (51.11%), Postives = 56/90 (62.22%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +V+GVN D Y  D  ++SNASCTTNCLAP  KV++ KFGI++G MTT HSYT  Q                   NI+P+STGAAKA
Sbjct:  127 DSPMFVMGVNNDQYTKDITVLSNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSYTATQKVVDGPSNKDWRGGRTAAQNIIPSSTGAAKA 216          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_EMENI (Glyceraldehyde-3-phosphate dehydrogenase OS=Emericella nidulans GN=gpdA PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.172e-18
Identity = 46/90 (51.11%), Postives = 56/90 (62.22%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +V+GVN + YK D  ++SNASCTTNCLAP  KV++  FGII+G MTT HSYT  Q                   NI+P+STGAAKA
Sbjct:  126 DAPMFVMGVNNETYKKDIQVLSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHSYTATQKVVDGPSAKDWRGGRTAATNIIPSSTGAAKA 215          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3PC_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Nicotiana tabacum GN=GAPC PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.172e-18
Identity = 46/90 (51.11%), Postives = 56/90 (62.22%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +VVGVN   YKP+  I+SNASCTTNCLAP  KV++ +FGI++G MTT HS T  Q                   NI+P+STGAAKA
Sbjct:  118 DAPMFVVGVNEKEYKPEYDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSLTATQKTVDGPSMKDWRGGRATSFNIIPSSTGAAKA 207          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_USTMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ustilago maydis GN=GAPD PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.836e-18
Identity = 46/90 (51.11%), Postives = 54/90 (60.00%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P YV GVN DAY P   ++SNASCTTNCLAP  KV+  KFGI++G MTT H+ T  Q                   NI+P+STGAAKA
Sbjct:  127 DAPMYVCGVNLDAYDPKAQVVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHATTATQKTVDGPSAKDWRGGRAAAANIIPSSTGAAKA 216          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.836e-18
Identity = 46/90 (51.11%), Postives = 56/90 (62.22%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +VVGVN   YKP+  I+SNASCTTNCLAP  KV++ +FGI++G MTT HS T  Q                   NI+P+STGAAKA
Sbjct:  129 DAPMFVVGVNEHEYKPELDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKA 218          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_ZYGRO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosaccharomyces rouxii PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.704e-18
Identity = 46/91 (50.55%), Postives = 55/91 (60.44%), Query Frame = 3
Query:    6 GDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            G  P YV+GVN + Y PD+ I+SNASCTTNCLAP  KV+  +FGI +G MTT HS T  Q                   NI+P+STGAAKA
Sbjct:  124 GSAPMYVMGVNEETYTPDQKIVSNASCTTNCLAPLAKVIHNEFGIKEGLMTTVHSMTATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKA 214          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_OMPOL (Glyceraldehyde-3-phosphate dehydrogenase OS=Omphalotus olearius GN=GPD PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.704e-18
Identity = 47/90 (52.22%), Postives = 54/90 (60.00%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P YV GVN DAY P  P ISNASCTTNCLAP  KV+  KFGI++G M+T H+ T  Q                   NI+P+STGAAKA
Sbjct:  126 DAPMYVCGVNLDAYDPRRPSISNASCTTNCLAPLAKVIHDKFGIVEGLMSTIHATTATQKTVDGPSNKDWRGGRSVNNNIIPSSTGAAKA 215          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_BOLED (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Boletus edulis GN=GPD PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.704e-18
Identity = 46/90 (51.11%), Postives = 55/90 (61.11%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +V GVN DAY P   +ISNASCTTNCLAP  KV++ KFGI++G MTT H+ T  Q                   NI+P+STGAAKA
Sbjct:  105 DAPMFVCGVNLDAYDPKHTVISNASCTTNCLAPLAKVVNDKFGIVEGLMTTVHATTATQKTVDGPSPKDWRGGRAVNNNIIPSSTGAAKA 194          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_BACME (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus megaterium GN=gap PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.704e-18
Identity = 47/87 (54.02%), Postives = 54/87 (62.07%), Query Frame = 3
Query:   18 TYVVGVNADAYKP-DEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            T V+GVN D Y   +  +ISNA CTTNCLAPF KVL+ KFG+ +G MTT HSYT DQ                  NI+PTSTGAAKA
Sbjct:  129 TIVMGVNEDKYDAANHNVISNAPCTTNCLAPFAKVLNDKFGLKRGMMTTVHSYTNDQQILDLPHKDYRRARAAAENIIPTSTGAAKA 215          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.704e-18
Identity = 47/90 (52.22%), Postives = 55/90 (61.11%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +VVGVN   YK D  I+SNASCTTNCLAP  KV++ KFGI++G MTT HS T  Q                   NI+P+STGAAKA
Sbjct:  132 DAPMFVVGVNEHQYKSDVNIVSNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSITATQKTVDGPSNKDWRGGRGAGFNIIPSSTGAAKA 221          
The following BLAST results are available for this feature:
BLAST of CK740227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 323
Match NameE-valueIdentityDescription
G3P_MONAN2.172e-1851.11Glyceraldehyde-3-phosphate dehydrogenase OS=Monasc... [more]
G3P_EMENI2.172e-1851.11Glyceraldehyde-3-phosphate dehydrogenase OS=Emeric... [more]
G3PC_TOBAC2.172e-1851.11Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_USTMA2.836e-1851.11Glyceraldehyde-3-phosphate dehydrogenase OS=Ustila... [more]
G3PC_DIACA2.836e-1851.11Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ZYGRO3.704e-1850.55Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosa... [more]
G3P_OMPOL3.704e-1852.22Glyceraldehyde-3-phosphate dehydrogenase OS=Omphal... [more]
G3P_BOLED3.704e-1851.11Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_BACME3.704e-1854.02Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3PC_PINSY3.704e-1852.22Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6722 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740227 ID=CK740227; Name=CK740227; organism=Citrus sinensis; type=EST; length=275bp
GCAAGGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGCTTAC
AAACCAGATGAGCCCATCATCAGCAATGCTTCTTGCACAACCAACTGCCT
TGCCCCATTCGTCAAGGTTCTTGACCAGAAGTTTGGCATTATCAAGGGAA
CCATGACCACCACACACTCGTACACTGGCGACCAAAGACTACTCGATGCT
AGCCACCGTGACCTCAGGCGTGCAAGAGCAGCTGCACTCAACATTGTCCC
AACATCAACTGGCGCGGCAAAAGCT
back to top