CK740227

Overview
NameCK740227
Unique NameCK740227
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length275
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_CRYCU (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus curvatus GN=GPD PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.252e-18
Identity = 45/90 (50.00%), Postives = 55/90 (61.11%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +V GVN +AYKP+  +ISNASCTTNCLAP  KV+   FGI++G MTT H+ T  Q                   NI+P+STGAAKA
Sbjct:  126 DAPMFVCGVNLEAYKPEYEVISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHATTATQKTVDGPSHKDWRGGRGAAANIIPSSTGAAKA 215          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_COCHE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cochliobolus heterostrophus GN=GPD1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.252e-18
Identity = 46/90 (51.11%), Postives = 55/90 (61.11%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +V+GVN + YKPD   +SNASCTTNCLAP  KV+  K+ II+G MTT HSYT  Q                   NI+P+STGAAKA
Sbjct:  126 DAPMFVMGVNHETYKPDIEALSNASCTTNCLAPLAKVIHDKYTIIEGLMTTIHSYTATQKVVDGPSAKDWRGGRTAAQNIIPSSTGAAKA 215          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_CANAL (Glyceraldehyde-3-phosphate dehydrogenase OS=Candida albicans GN=TDH1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.252e-18
Identity = 48/90 (53.33%), Postives = 54/90 (60.00%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +VVGVN D Y PD  IISNASCTTNCLAP  KV++  FGI +G MTT HS T  Q                   NI+P+STGAAKA
Sbjct:  126 DAPMFVVGVNEDKYTPDLKIISNASCTTNCLAPLAKVVNDTFGIEEGLMTTVHSITATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKA 215          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_ASPNG (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus niger GN=gpdA PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.252e-18
Identity = 45/90 (50.00%), Postives = 56/90 (62.22%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +V+GVN  +Y  D  ++SNASCTTNCLAP  KV++ KFGI++G MTT HSYT  Q                   NI+P+STGAAKA
Sbjct:  126 DAPMFVMGVNNTSYTKDINVLSNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSYTATQKVVDAPSSKDWRGGRTAAQNIIPSSTGAAKA 215          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3PC_TAXBA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Taxus baccata PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.252e-18
Identity = 46/90 (51.11%), Postives = 55/90 (61.11%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +VVGVN   YK D  I+SNASCTTNCLAP  KV++ +FGI++G MTT HS T  Q                   NI+P+STGAAKA
Sbjct:  132 DAPMFVVGVNEHEYKSDLTIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSNKDWRGGRAAGFNIIPSSTGAAKA 221          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.252e-18
Identity = 45/90 (50.00%), Postives = 54/90 (60.00%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +VVGVN   Y PD  ++SNASCTTNCLAP  KV+  +FGI++G MTT HS T  Q                   NI+P+STGAAKA
Sbjct:  129 DAPMFVVGVNEKTYTPDIDVVSNASCTTNCLAPLAKVIHDRFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKA 218          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3PC_ARATH (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Arabidopsis thaliana GN=GAPC PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.252e-18
Identity = 46/90 (51.11%), Postives = 55/90 (61.11%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +VVGVN   YK D  I+SNASCTTNCLAP  KV++ +FGI++G MTT HS T  Q                   NI+P+STGAAKA
Sbjct:  131 DAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKA 220          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P2_DROME (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila melanogaster GN=Gapdh2 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.252e-18
Identity = 45/90 (50.00%), Postives = 54/90 (60.00%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +V GVN DAYKPD  ++SNASCTTNCLAP  KV++  F I++G MTT H+ T  Q                   NI+P STGAAKA
Sbjct:  124 DAPMFVCGVNLDAYKPDMKVVSNASCTTNCLAPLAKVINDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKA 213          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_THEAQ (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermus aquaticus GN=gap PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.078e-17
Identity = 48/92 (52.17%), Postives = 57/92 (61.96%), Query Frame = 3
Query:    3 KGDIPTYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            KG+  T V+GVN +AY P    IISNASCTTN LAP +KVL++ FG+ K  MTT HSYT DQ                  NI+PT+TGAAKA
Sbjct:  121 KGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKA 212          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3PE_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 OS=Zea mays GN=GAPC3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.078e-17
Identity = 46/90 (51.11%), Postives = 55/90 (61.11%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +VVGVN   YK D  I+SNASCTTNCLAP  KV++ KFGI++G MTT H+ T  Q                   NI+P+STGAAKA
Sbjct:  129 DAPMFVVGVNEKEYKSDINIVSNASCTTNCLAPLAKVINDKFGIVEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKA 218          
The following BLAST results are available for this feature:
BLAST of CK740227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 323
Match NameE-valueIdentityDescription
G3P_CRYCU8.252e-1850.00Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P_COCHE8.252e-1851.11Glyceraldehyde-3-phosphate dehydrogenase OS=Cochli... [more]
G3P_CANAL8.252e-1853.33Glyceraldehyde-3-phosphate dehydrogenase OS=Candid... [more]
G3P_ASPNG8.252e-1850.00Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3PC_TAXBA8.252e-1851.11Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_CRAPL8.252e-1850.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ARATH8.252e-1851.11Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_DROME8.252e-1850.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P_THEAQ1.078e-1752.17Glyceraldehyde-3-phosphate dehydrogenase OS=Thermu... [more]
G3PE_MAIZE1.078e-1751.11Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6722 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740227 ID=CK740227; Name=CK740227; organism=Citrus sinensis; type=EST; length=275bp
GCAAGGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGCTTAC
AAACCAGATGAGCCCATCATCAGCAATGCTTCTTGCACAACCAACTGCCT
TGCCCCATTCGTCAAGGTTCTTGACCAGAAGTTTGGCATTATCAAGGGAA
CCATGACCACCACACACTCGTACACTGGCGACCAAAGACTACTCGATGCT
AGCCACCGTGACCTCAGGCGTGCAAGAGCAGCTGCACTCAACATTGTCCC
AACATCAACTGGCGCGGCAAAAGCT
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