CK740227

Overview
NameCK740227
Unique NameCK740227
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length275
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3PC_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Gracilaria verrucosa GN=GAPC PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.838e-17
Identity = 46/90 (51.11%), Postives = 55/90 (61.11%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +V GVN D Y PD  +ISNASCTTNCLAP VKV+ +K+GI +G MTT H+ T  Q                   NI+P+STGAAKA
Sbjct:  127 DAPMFVCGVNEDKYTPDLNVISNASCTTNCLAPLVKVIHEKYGIEEGLMTTVHATTATQKTVDGPSQKDWRGGRGAGANIIPSSTGAAKA 216          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P2_DROSU (Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragment) OS=Drosophila subobscura GN=Gapdh2 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.838e-17
Identity = 44/90 (48.89%), Postives = 54/90 (60.00%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +V GVN DAYKPD  ++SNASCTTNCLAP  KV++  F I++G MTT H+ T  Q                   NI+P +TGAAKA
Sbjct:  114 DAPMFVCGVNLDAYKPDMKVVSNASCTTNCLAPLAKVINDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKA 203          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P2_DROPS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila pseudoobscura pseudoobscura GN=Gapdh2 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.838e-17
Identity = 44/90 (48.89%), Postives = 54/90 (60.00%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +V GVN DAYKPD  ++SNASCTTNCLAP  KV++  F I++G MTT H+ T  Q                   NI+P +TGAAKA
Sbjct:  124 DAPMFVCGVNLDAYKPDMKVVSNASCTTNCLAPLAKVINDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKA 213          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P2_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Bacillus subtilis GN=gapB PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.838e-17
Identity = 47/92 (51.09%), Postives = 57/92 (61.96%), Query Frame = 3
Query:    3 KGDIPTYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            K +  T V+GVN D +  +   IISNASCTTNCLAP VKVLD++FGI  G MTT H+YT DQ                  +I+PT+TGAAKA
Sbjct:  124 KNEDVTIVMGVNEDQFDAERHVIISNASCTTNCLAPVVKVLDEEFGIESGLMTTVHAYTNDQKNIDNPHKDLRRARACGESIIPTTTGAAKA 215          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3PC_RANAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ranunculus acris GN=GAPC PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.401e-17
Identity = 45/90 (50.00%), Postives = 55/90 (61.11%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +VVGVN   YK D  I+SNASCTTNCLAP  KV++ +FGI++G MTT H+ T  Q                   NI+P+STGAAKA
Sbjct:  130 DAPMFVVGVNHTEYKSDIDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAMTATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKA 219          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3PC_MESCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Mesembryanthemum crystallinum GN=GAPC PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.401e-17
Identity = 45/90 (50.00%), Postives = 55/90 (61.11%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +VVGVN   YK D  I+SNASCTTNCLAP  KV++ +FGI++G MTT H+ T  Q                   NI+P+STGAAKA
Sbjct:  129 DAPMFVVGVNEHEYKSDLNIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAMTATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKA 218          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_ZYMMO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomonas mobilis GN=gap PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.136e-17
Identity = 45/92 (48.91%), Postives = 56/92 (60.87%), Query Frame = 3
Query:    3 KGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            KGD+  T V GVN      D+ I+SNASCTTNCLAP + VL QK GI++G MTT HS+T DQ                  +++PTSTGAA+A
Sbjct:  126 KGDVDRTVVYGVNHKDLTADDKIVSNASCTTNCLAPVLHVLQQKIGIVRGLMTTVHSFTNDQRILDQIHSDLRRARTASASMIPTSTGAARA 217          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3PD_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 2 OS=Zea mays GN=GAPC2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.136e-17
Identity = 46/90 (51.11%), Postives = 53/90 (58.89%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +VVGVN D Y  D  I+SNASCTTNCLAP  KV+   FGII+G MTT H+ T  Q                   NI+P+STGAAKA
Sbjct:  129 DAPMFVVGVNEDKYTSDVNIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVHAITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKA 218          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P1_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schizosaccharomyces pombe GN=tdh1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.136e-17
Identity = 45/90 (50.00%), Postives = 54/90 (60.00%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P YVVGVN + + P E +ISNASCTTNCLAP  KV++  FGI +G MTT H+ T  Q                   NI+P+STGAAKA
Sbjct:  127 DAPMYVVGVNEEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTATQKTVDGPSKKDWRGGRGASANIIPSSTGAAKA 216          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_PHANO (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeosphaeria nodorum GN=GPD1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.095e-17
Identity = 45/90 (50.00%), Postives = 54/90 (60.00%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +V+GVN + Y  D  ++SNASCTTNCLAP  KV+  KF II+G MTT HSYT  Q                   NI+P+STGAAKA
Sbjct:  126 DAPMFVMGVNNETYTKDIEVLSNASCTTNCLAPLAKVIHDKFTIIEGLMTTVHSYTATQKVVDGPSAKDWRGGRTAAQNIIPSSTGAAKA 215          
The following BLAST results are available for this feature:
BLAST of CK740227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 323
Match NameE-valueIdentityDescription
G3PC_GRAVE1.838e-1751.11Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_DROSU1.838e-1748.89Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragme... [more]
G3P2_DROPS1.838e-1748.89Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P2_BACSU1.838e-1751.09Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Baci... [more]
G3PC_RANAC2.401e-1750.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MESCR2.401e-1750.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ZYMMO3.136e-1748.91Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomo... [more]
G3PD_MAIZE3.136e-1751.11Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_SCHPO3.136e-1750.00Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schi... [more]
G3P_PHANO4.095e-1750.00Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeos... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6722 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740227 ID=CK740227; Name=CK740227; organism=Citrus sinensis; type=EST; length=275bp
GCAAGGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGCTTAC
AAACCAGATGAGCCCATCATCAGCAATGCTTCTTGCACAACCAACTGCCT
TGCCCCATTCGTCAAGGTTCTTGACCAGAAGTTTGGCATTATCAAGGGAA
CCATGACCACCACACACTCGTACACTGGCGACCAAAGACTACTCGATGCT
AGCCACCGTGACCTCAGGCGTGCAAGAGCAGCTGCACTCAACATTGTCCC
AACATCAACTGGCGCGGCAAAAGCT
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