CK740227

Overview
NameCK740227
Unique NameCK740227
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length275
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_LACDT (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Lactarius deterrimus GN=GPD PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.095e-17
Identity = 45/90 (50.00%), Postives = 55/90 (61.11%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +VVGVN DAY     +ISNASCTTNCLAP  KV++ KFGI++G M+T H+ T  Q                   NI+P+STGAAKA
Sbjct:  105 DAPMFVVGVNLDAYDSKYTVISNASCTTNCLAPLAKVINDKFGIVEGLMSTIHATTATQKTVDGPSNKDWRGGRAVNGNIIPSSTGAAKA 194          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_COLGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum gloeosporioides GN=GPDA PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.095e-17
Identity = 45/90 (50.00%), Postives = 54/90 (60.00%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P YV+ VN  +Y     +ISNASCTTNCLAP  KV++ KFGI++G MTT HSYT  Q                   NI+P+STGAAKA
Sbjct:  127 DAPMYVMVVNEKSYDGSADVISNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSYTATQKTVHGPSAKDWRGGRTAAQNIIPSSTGAAKA 216          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_AMAMU (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Amanita muscaria GN=GPD PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.095e-17
Identity = 44/90 (48.89%), Postives = 54/90 (60.00%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +V GVN D Y P   ++SNASCTTNCLAP  KV++ KFGI++G MTT H+ T  Q                   NI+P+STGAAKA
Sbjct:  104 DAPMFVCGVNLDKYDPKFQVVSNASCTTNCLAPLAKVVNDKFGIVEGLMTTVHATTATQKTVDGPSAKDWRGGRSVNNNIIPSSTGAAKA 193          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3PC_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 1 OS=Zea mays GN=GAPC1 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.095e-17
Identity = 45/90 (50.00%), Postives = 53/90 (58.89%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +VVGVN D Y  D  I+SNASCTTNCLAP  KV+   FGI++G MTT H+ T  Q                   NI+P+STGAAKA
Sbjct:  129 DAPMFVVGVNEDKYTSDVNIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKA 218          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P2_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Candida glabrata GN=GPD2 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.095e-17
Identity = 46/88 (52.27%), Postives = 53/88 (60.23%), Query Frame = 3
Query:   15 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            P +VVGVN D Y  D  I+SNASCTTNCLAP  KV+D+ FGI +G MTT HS T  Q                   NI+P+STGAAKA
Sbjct:  127 PMFVVGVNEDKYTSDLKIVSNASCTTNCLAPLAKVIDEAFGIEEGLMTTVHSLTATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKA 214          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_MASBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Mastigamoeba balamuthi GN=GAPD PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.349e-17
Identity = 44/90 (48.89%), Postives = 54/90 (60.00%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +V GVN  + K D+ + SNASCTTNCLAP  KV++ KFGI++G MTT HS T  Q                   NI+P+STGAAKA
Sbjct:  131 DAPMFVYGVNHQSLKADQTVFSNASCTTNCLAPLTKVINDKFGIVRGLMTTVHSTTATQKTVDGPSGKAWRDGRAAAGNIIPSSTGAAKA 220          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.349e-17
Identity = 44/90 (48.89%), Postives = 55/90 (61.11%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +V+GVN + YK D  ++SN+SCTTNCLAP  KV+  K+ II+G MTT HSYT  Q                   NI+P+STGAAKA
Sbjct:  126 DAPMFVMGVNHETYKSDIEVLSNSSCTTNCLAPLAKVIHDKYTIIEGLMTTIHSYTATQKVVDGPSAKDWRGGRTAAQNIIPSSTGAAKA 215          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_BORBU (Glyceraldehyde-3-phosphate dehydrogenase OS=Borrelia burgdorferi GN=gap PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 5.349e-17
Identity = 45/91 (49.45%), Postives = 53/91 (58.24%), Query Frame = 3
Query:    3 KGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            K +I T V+GVN      D   +SNASCTTNCLAP  KVL + FGI +G MTT H+YT DQ                  +I+PTSTGAAKA
Sbjct:  126 KDEIKTIVLGVNDHDINSDLKAVSNASCTTNCLAPLAKVLHESFGIEQGLMTTVHAYTNDQRILDLPHSDLRRARAAALSIIPTSTGAAKA 216          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P2_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Trichoderma koningii GN=gpd2 PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 5.349e-17
Identity = 44/90 (48.89%), Postives = 53/90 (58.89%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P YV+GVN   Y     +ISNASCTTNCLAP  KV++  +GI++G MTT HSYT  Q                   NI+P+STGAAKA
Sbjct:  127 DAPMYVMGVNESDYDGSADVISNASCTTNCLAPLAKVINDNYGIVEGLMTTVHSYTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKA 216          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_PICAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia angusta GN=GPD PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.986e-17
Identity = 46/90 (51.11%), Postives = 54/90 (60.00%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +VVGVN + Y PD  I+SNASCTTNCLAP  KV++  FGI +G MTT HS T  Q                   NI+P+STGAAKA
Sbjct:  126 DAPMFVVGVNHEEYTPDIKILSNASCTTNCLAPLAKVINDIFGIEEGLMTTVHSITATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKA 215          
The following BLAST results are available for this feature:
BLAST of CK740227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 323
Match NameE-valueIdentityDescription
G3P_LACDT4.095e-1750.00Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_COLGL4.095e-1750.00Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P_AMAMU4.095e-1748.89Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3PC_MAIZE4.095e-1750.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_CANGA4.095e-1752.27Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Cand... [more]
G3P_MASBA5.349e-1748.89Glyceraldehyde-3-phosphate dehydrogenase OS=Mastig... [more]
G3P_CURLU5.349e-1748.89Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
G3P_BORBU5.349e-1749.45Glyceraldehyde-3-phosphate dehydrogenase OS=Borrel... [more]
G3P2_TRIKO5.349e-1748.89Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Tric... [more]
G3P_PICAN6.986e-1751.11Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6722 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740227 ID=CK740227; Name=CK740227; organism=Citrus sinensis; type=EST; length=275bp
GCAAGGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGCTTAC
AAACCAGATGAGCCCATCATCAGCAATGCTTCTTGCACAACCAACTGCCT
TGCCCCATTCGTCAAGGTTCTTGACCAGAAGTTTGGCATTATCAAGGGAA
CCATGACCACCACACACTCGTACACTGGCGACCAAAGACTACTCGATGCT
AGCCACCGTGACCTCAGGCGTGCAAGAGCAGCTGCACTCAACATTGTCCC
AACATCAACTGGCGCGGCAAAAGCT
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