CK740231

Overview
NameCK740231
Unique NameCK740231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740231 vs. ExPASy Swiss-Prot
Match: SAR1A_MOUSE (GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.575e-17
Identity = 44/145 (30.34%), Postives = 86/145 (59.31%), Query Frame = 2
Query:  149 GLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 583
            G S    F  L+ KK  +++ +GLD AGKTT+L  LK   +   +PT+    E +    ++FT +D+GG ++ R +W++Y     G++F+VD  D  R++E++ EL+ ++ ++ + +  +L+  NK D  +A++  ++ +  GL+
Sbjct:   11 GFSSVLQFLGLY-KKSGKLVFLGLDNAGKTTLLQMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIKGLY 154          
BLAST of CK740231 vs. ExPASy Swiss-Prot
Match: CIN4_YEAST (GTP-binding protein CIN4 OS=Saccharomyces cerevisiae GN=CIN4 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.363e-17
Identity = 49/137 (35.77%), Postives = 79/137 (57.66%), Query Frame = 2
Query:  191 KEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR---DAVLLVFANKQDLPNAMNAAEITDKLGLH 583
            KE+R L++GLD +GK+TI+ KL   +       +PT+GF + ++  K+++ ++WD+GGQ  +RP W +YF  TQ +I+ +D +   R  E   EL  ++N DE R   +  ++V  NK DL        + DK  LH
Sbjct:   15 KEIRCLILGLDNSGKSTIVNKLLPKDEQNNDGIMPTVGFQIHSLMIKDVTISLWDIGGQRTLRPFWDNYFDKTQAMIWCIDVSLSMRFDETLQELKELINRDENRIGYECAVIVVLNKIDL--------VEDKSELH 143          
BLAST of CK740231 vs. ExPASy Swiss-Prot
Match: ARL10_MOUSE (ADP-ribosylation factor-like protein 10 OS=Mus musculus GN=Arl10 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.493e-17
Identity = 53/153 (34.64%), Postives = 85/153 (55.56%), Query Frame = 2
Query:  191 KEMRILMVGLDAAGKTTILYKLK-LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG-LHSLRQRH-WYIQSTCATSGEG 640
            ++  +L++GLD +GK+T L  L     +   +PT GFN   +  KN    + ++G    +R  W+ +      L+F+VDS DR R+  AR EL ++L+ D   D  +++ ANKQDL  AMN  E+  +LG L S  QR  + + ++ A +G G
Sbjct:   75 EQREVLVLGLDGSGKSTFLRMLAGKPPVEGHVPTWGFNSVRLPTKNFEVDLLEIGDSQNLRFYWKEFVNEVDVLVFMVDSTDRLRLPWARQELQKLLDRDP--DLPVVIVANKQDLSGAMNMVELQQELGLLASYNQREVFLLAASIAPAGSG 225          
BLAST of CK740231 vs. ExPASy Swiss-Prot
Match: ARLX_DICDI (ADP-ribosylation factor-like protein DDB_G0292332 OS=Dictyostelium discoideum GN=DDB_G0292332 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.669e-16
Identity = 52/141 (36.88%), Postives = 82/141 (58.16%), Query Frame = 2
Query:  152 LSFTK-LFSKLFAKKEMRILMVGLDAAGKTTILYKLK--LGEIVTT---------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF-QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 535
            +SF K LF  L  KK   ++++G++  GKTT+LY +     E +TT         IPT GFNVE++  + + F +WD+GG++  R  +RHY       +IFV DS+D + + E++ E   + N+  L++   L+ ANKQDL
Sbjct:    5 ISFIKNLFGFLTIKK---VMILGVENVGKTTLLYNIYKFYSENITTTTLSSLPIPIPTNGFNVESIVIEQVKFDIWDIGGKETNRICYRHYLTSEIDSIIFVFDSSDINSLEESKKEYQYLKNQISLKNVPFLLVANKQDL 142          
BLAST of CK740231 vs. ExPASy Swiss-Prot
Match: ARL9_HUMAN (ADP-ribosylation factor-like protein 9 OS=Homo sapiens GN=ARL9 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.148e-15
Identity = 47/132 (35.61%), Postives = 74/132 (56.06%), Query Frame = 2
Query:  188 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 580
            +K  +IL++GLD AGKT++L+ L    +  ++ PT GF+   +  ++      ++GG    R  W  Y      LIFVVDS D  R+ EA+  LH+++  + +    L+VFANKQDL  A +  +I + L L
Sbjct:   16 EKNKQILVLGLDGAGKTSVLHSLASNRVQHSVAPTQGFHAVCINTEDSQMEFLEIGGSKPFRSYWEMYLSKGLLLIFVVDSADHSRLPEAKKYLHQLIAANPV--LPLVVFANKQDLEAAYHITDIHEALAL 145          
BLAST of CK740231 vs. ExPASy Swiss-Prot
Match: SAR1_ENCCU (Small COPII coat GTPase SAR1 OS=Encephalitozoon cuniculi GN=SAR1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.947e-13
Identity = 47/143 (32.87%), Postives = 76/143 (53.15%), Query Frame = 2
Query:  116 KSFLFFLRAKMGLSFTKLFS---KLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 535
            + +L  ++AK+   + K+F    K    K   IL +G+D AGKTT++ KLK       +PT   +   +E  N+   V D+GG    R  WR YF +  G++F+VD +D +R  E R+    +L+ +  + A ++V  NK DL
Sbjct:    6 QEYLGVVKAKLTEFYEKVFQNFVKSLFGKPSSILFLGIDNAGKTTLVNKLKSDSTDVYMPTHHPSTSYIEIGNLKAQVIDLGGHTAARLAWRDYFYDCHGIVFIVDVHDVERFQEVREAYETVLSLE--KRAPVVVLMNKIDL 146          
BLAST of CK740231 vs. ExPASy Swiss-Prot
Match: SAR1_TOBAC (GTP-binding protein SAR1 OS=Nicotiana tabacum GN=SAR1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.494e-12
Identity = 36/98 (36.73%), Postives = 58/98 (59.18%), Query Frame = 2
Query:  188 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN 481
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W+ Y+     ++++VDS D++R  E++ EL  +L+
Sbjct:   18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDSFDKERFAESKKELDALLS 115          
The following BLAST results are available for this feature:
BLAST of CK740231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
SAR1A_MOUSE2.575e-1730.34GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a... [more]
CIN4_YEAST3.363e-1735.77GTP-binding protein CIN4 OS=Saccharomyces cerevisi... [more]
ARL10_MOUSE7.493e-1734.64ADP-ribosylation factor-like protein 10 OS=Mus mus... [more]
ARLX_DICDI1.669e-1636.88ADP-ribosylation factor-like protein DDB_G0292332 ... [more]
ARL9_HUMAN3.148e-1535.61ADP-ribosylation factor-like protein 9 OS=Homo sap... [more]
SAR1_ENCCU2.947e-1332.87Small COPII coat GTPase SAR1 OS=Encephalitozoon cu... [more]
SAR1_TOBAC2.494e-1236.73GTP-binding protein SAR1 OS=Nicotiana tabacum GN=S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6726 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740231 ID=CK740231; Name=CK740231; organism=Citrus sinensis; type=EST; length=682bp
AATTTTCGAGACCTATAAAATCTAGAAAAAGCCCACCATTTTTGTAGTTT
TATTTTAATTTGAATTTTTGGTTTAAGTGGTGTTCGGCAGCTCCCTCTTG
ATCAGATTAGATTACAAATCCTTTCTCTTCTTTCTGAGAGCAAAAATGGG
GCTGTCTTTCACCAAGCTTTTCAGTAAGTTATTTGCAAAGAAGGAGATGC
GAATTCTTATGGTCGGTCTTGATGCAGCTGGTAAAACCACAATTTTATAT
AAGCTTAAGTTAGGGGAGATCGTTACCACCATCCCCACCATTGGTTTCAA
TGTGGAGACTGTGGAATACAAGAATATTAGCTTCACTGTCTGGGATGTTG
GAGGTCAAGACAAGATTCGACCTTTGTGGAGACACTATTTTCAAAATACA
CAAGGTCTTATCTTTGTGGTTGACAGCAATGATCGTGACCGTGTTGTTGA
GGCTAGAGATGAGCTGCACAGGATGTTGAATGAGGATGAGTTGAGGGATG
CTGTGTTGCTTGTGTTTGCAAACAAACAAGATCTTCCAAATGCAATGAAT
GCTGCCGAGATCACTGACAAGCTTGGCCTTCATTCTCTCCGACAACGTCA
CTGGTATATCCAGAGCACTTGTGCCACTTCTGGAGAAGGGTCTACCAGGG
ACTAGACTGGCTCTCAAACAACATTGCTACCA
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