CK740263

Overview
NameCK740263
Unique NameCK740263
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_DROYA (Triosephosphate isomerase OS=Drosophila yakuba GN=Tpi PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.324e-54
Identity = 96/173 (55.49%), Postives = 123/173 (71.10%), Query Frame = 3
Query:   84 LFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATAR 602
            ++L   ++ L  +  +A QN +    GAFTGEIS  ML ++G  WVILGHSERR I  ES+  + +K  +AL++GLKVIAC+GETLE+REAG T +VVA Q  A A ++  W N+V+AYEPVWAIGTGK ATP QAQEVH  LR+WL  N S E++A+ RI YGGSV  A A+
Sbjct:   45 IYLMYARNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYAQKIKDWKNVVVAYEPVWAIGTGKTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAK 217          

HSP 2 Score: 39.2762 bits (90), Expect = 1.324e-54
Identity = 17/21 (80.95%), Postives = 19/21 (90.48%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASL 655
            N KELA +PD+DGFLVGGASL
Sbjct:  215 NAKELAKKPDIDGFLVGGASL 235          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_DROSI (Triosephosphate isomerase OS=Drosophila simulans GN=Tpi PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.324e-54
Identity = 96/173 (55.49%), Postives = 123/173 (71.10%), Query Frame = 3
Query:   84 LFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATAR 602
            ++L   ++ L  +  +A QN +    GAFTGEIS  ML ++G  WVILGHSERR I  ES+  + +K  +AL++GLKVIAC+GETLE+REAG T +VVA Q  A A ++  W N+V+AYEPVWAIGTGK ATP QAQEVH  LR+WL  N S E++A+ RI YGGSV  A A+
Sbjct:   45 IYLMYARNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYAQKIKDWKNVVVAYEPVWAIGTGKTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAK 217          

HSP 2 Score: 39.2762 bits (90), Expect = 1.324e-54
Identity = 17/21 (80.95%), Postives = 19/21 (90.48%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASL 655
            N KELA +PD+DGFLVGGASL
Sbjct:  215 NAKELAKKPDIDGFLVGGASL 235          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_DROME (Triosephosphate isomerase OS=Drosophila melanogaster GN=Tpi PE=1 SV=3)

HSP 1 Score: 192.2 bits (487), Expect = 3.825e-54
Identity = 95/173 (54.91%), Postives = 123/173 (71.10%), Query Frame = 3
Query:   84 LFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATAR 602
            ++L   ++ L  +  +A QN +    GAFTGEIS  ML ++G  WVILGHSERR I  ES+  + +K  +AL++GLKVIAC+GETLE+REAG T +VVA Q  A A ++  W N+V+AYEPVWAIGTG+ ATP QAQEVH  LR+WL  N S E++A+ RI YGGSV  A A+
Sbjct:   45 IYLMYARNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYAQKIKDWKNVVVAYEPVWAIGTGQTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAK 217          

HSP 2 Score: 39.2762 bits (90), Expect = 3.825e-54
Identity = 17/21 (80.95%), Postives = 19/21 (90.48%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASL 655
            N KELA +PD+DGFLVGGASL
Sbjct:  215 NAKELAKKPDIDGFLVGGASL 235          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_ANOME (Triosephosphate isomerase (Fragment) OS=Anopheles merus GN=Tpi PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 4.999e-54
Identity = 105/172 (61.05%), Postives = 125/172 (72.67%), Query Frame = 3
Query:   87 FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATAR 602
            +L L +S L     VAAQNC+    GAFTGEIS  ML +LG+ WVILGHSERR I  E++E + +KVA+AL +GLKVIAC+GETL++REAG T  V   QTKAIA +V  WSN+V+AYEPVWAIGTGK ATP QAQEVH  LRKW   N S +++ A RI YGGSV  A  R
Sbjct:   28 YLSLARSLLPETIGVAAQNCYKVAKGAFTGEISPAMLKDLGLGWVILGHSERRAIFGETDELIAEKVAHALGEGLKVIACIGETLQEREAGQTEAVCFRQTKAIAAQVKDWSNVVIAYEPVWAIGTGKTATPEQAQEVHAALRKWFTENVSADVSNAIRIQYGGSVTAANCR 199          

HSP 2 Score: 21.557 bits (44), Expect = 4.999e-54
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = 2
Query:  593 NCKELAAQPD 622
            NC+ELA +PD
Sbjct:  197 NCRELAGKPD 206          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_HELVI (Triosephosphate isomerase (Fragment) OS=Heliothis virescens GN=Tpi PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 1.107e-53
Identity = 102/174 (58.62%), Postives = 129/174 (74.14%), Query Frame = 3
Query:   84 LFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV-SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATAR 602
            ++L  V+S +     VAAQNCW    GAFTGEIS  M+ ++G  WVILGHSERR I  E ++ V +KVA+AL  GLKVIAC+GETLE+REAG T +VV  QTKA+   + ++W+N+VLAYEPVWAIGTGK A+P QAQ+VH  LR WL +N SP++AA+ RI YGGSV  A A+
Sbjct:   33 IYLAYVQSIVPGTISVAAQNCWKVAKGAFTGEISPAMIKDIGANWVILGHSERRTIFGEKDDLVAEKVAHALENGLKVIACIGETLEEREAGKTEEVVFRQTKALLPAIGNNWANVVLAYEPVWAIGTGKTASPQQAQDVHASLRNWLSSNASPDVAASVRIQYGGSVTAANAK 206          

HSP 2 Score: 21.557 bits (44), Expect = 1.107e-53
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 2
Query:  593 NCKELAAQPDVD 628
            N KEL+A PD+D
Sbjct:  204 NAKELSAFPDID 215          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_NEUCR (Triosephosphate isomerase OS=Neurospora crassa GN=tpi-1 PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.877e-53
Identity = 94/175 (53.71%), Postives = 121/175 (69.14%), Query Frame = 3
Query:   84 LFLGLVKSSL-RPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATARN 605
            L+L  VK +L +P+  VAAQN + K  GAFTGEISA  L++LG+ WVILGHSERR  L ES+EF+  K  YAL  G+ VI C GE+ + R+AG T+  V  Q  A+A  ++ W N+V+AYEP+WAIGTG VAT  QAQEVH  +R WL  N S ++A  TRI+YGGSVN    ++
Sbjct:   45 LYLDFVKQNLQKPNVEVAAQNVFNKPNGAFTGEISATQLLDLGVKWVILGHSERRNELGESDEFIASKTKYALDNGISVIWCCGESKDTRQAGETIKFVENQLAALAKEINDWKNVVIAYEPIWAIGTGLVATKEQAQEVHAAIRSWLKQNVSDKVAEETRILYGGSVNAKNCKD 219          

HSP 2 Score: 38.891 bits (89), Expect = 1.877e-53
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASL 655
            NCK+LA + D+DGFLVGGASL
Sbjct:  216 NCKDLAKEQDIDGFLVGGASL 236          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_ENTHI (Triosephosphate isomerase OS=Entamoeba histolytica GN=TPI PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 9.206e-53
Identity = 98/157 (62.42%), Postives = 117/157 (74.52%), Query Frame = 3
Query:  129 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGA 593
            V+A+N W K G A+TGE+   MLV+  +P+VILGHSERR I +ESNE V +KV  A+  GLKVIAC+GET  QR A  T +VVAAQ KAI + +S  +W NI+LAYEPVWAIGTGK ATP QAQEVH  +RKW+  N S E+A ATRI YGGSVN A
Sbjct:   69 VSAENAWTKSG-AYTGEVHVGMLVDCQVPYVILGHSERRQIFHESNEQVAEKVKVAIDAGLKVIACIGETEAQRIANQTEEVVAAQLKAINNAISKEAWKNIILAYEPVWAIGTGKTATPDQAQEVHQYIRKWMTENISKEVAEATRIQYGGSVNPA 224          

HSP 2 Score: 38.891 bits (89), Expect = 9.206e-53
Identity = 17/30 (56.67%), Postives = 22/30 (73.33%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASLNRSSLTSSI 682
            NC ELA + D+DGFLVGGASL+ +   + I
Sbjct:  225 NCNELAKKADIDGFLVGGASLDAAKFKTII 254          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_LEIME (Triosephosphate isomerase OS=Leishmania mexicana PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.660e-52
Identity = 103/202 (50.99%), Postives = 136/202 (67.33%), Query Frame = 3
Query:    3 VKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLR-PDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATA 599
            ++K+V V NE                F+ + LV++ LR P + ++A+N  + K GAFTGE+S  +L ++G+ WVILGHSERR    E++E V  KV+ A  QG  VIAC+GETL+QREA  T  VV +QT AIA +++  +W+ +VLAYEPVWAIGTGKVATP QAQEVH  LRKW+  N   ++AA  RI+YGGSVN A A
Sbjct:   22 IEKLVQVFNE--HTISHDVQCVVAPTFVHIPLVQAKLRNPKYVISAENA-IAKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANA 220          

HSP 2 Score: 32.3426 bits (72), Expect = 2.660e-52
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASL 655
            N   L A+PD++GFLVGGASL
Sbjct:  219 NAATLYAKPDINGFLVGGASL 239          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_TAESO (Triosephosphate isomerase OS=Taenia solium PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.520e-52
Identity = 93/162 (57.41%), Postives = 112/162 (69.14%), Query Frame = 3
Query:  129 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS---WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATARN 605
            +AA+NC+    GAFTGEIS EM+ + G  WVILGHSERR I  ESNE +G+KV +AL  GL VI C+GE L +REAG T DV  AQ  AIA  V S   W  +V+AYEPVWAIGTGK ATPAQAQEVH  +R W+  +    IA   RI+YGGSV  + A++
Sbjct:   60 IAAENCYKVGSGAFTGEISTEMIKDCGCEWVILGHSERRHIFGESNELIGEKVKHALDSGLNVIPCIGELLSEREAGKTNDVCFAQMDAIAKNVPSKEAWDKVVIAYEPVWAIGTGKTATPAQAQEVHKVVRDWIRKHVDAGIADKVRILYGGSVTASNAKD 221          

HSP 2 Score: 40.0466 bits (92), Expect = 4.520e-52
Identity = 18/27 (66.67%), Postives = 20/27 (74.07%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASLNRSSLT 673
            N K+L  QPDVDGFLVGGASL    +T
Sbjct:  218 NAKDLGTQPDVDGFLVGGASLKPDFIT 244          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_PARBA (Triosephosphate isomerase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=TPI1 PE=1 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 7.680e-52
Identity = 91/176 (51.70%), Postives = 117/176 (66.48%), Query Frame = 3
Query:   84 LFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATARN 605
            ++L L +        V+AQN + K  GAFTGE+S E L +  I W + GHSERR++L E +EFV  K   A++ GL VI C+GE+LE+REAG T+DVV  Q  A+A+ VS   W+ +V+AYEP+WAIGTGKVAT  QAQEVH  +RKWL    SPE A   R+IYGGSV     R+
Sbjct:   45 IYLVLARQLANGQVAVSAQNVFDKPNGAFTGELSVEQLRDEKITWTLAGHSERRVLLREDDEFVARKTKAAINGGLNVILCIGESLEEREAGKTIDVVTRQLDAVAEEVSPAEWNKVVIAYEPIWAIGTGKVATTEQAQEVHASIRKWLNEKISPEAAENIRVIYGGSVTENNCRD 220          

HSP 2 Score: 44.2838 bits (103), Expect = 7.680e-52
Identity = 19/21 (90.48%), Postives = 21/21 (100.00%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASL 655
            NC++LAAQPDVDGFLVGGASL
Sbjct:  217 NCRDLAAQPDVDGFLVGGASL 237          
The following BLAST results are available for this feature:
BLAST of CK740263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_DROYA1.324e-5455.49Triosephosphate isomerase OS=Drosophila yakuba GN=... [more]
TPIS_DROSI1.324e-5455.49Triosephosphate isomerase OS=Drosophila simulans G... [more]
TPIS_DROME3.825e-5454.91Triosephosphate isomerase OS=Drosophila melanogast... [more]
TPIS_ANOME4.999e-5461.05Triosephosphate isomerase (Fragment) OS=Anopheles ... [more]
TPIS_HELVI1.107e-5358.62Triosephosphate isomerase (Fragment) OS=Heliothis ... [more]
TPIS_NEUCR1.877e-5353.71Triosephosphate isomerase OS=Neurospora crassa GN=... [more]
TPIS_ENTHI9.206e-5362.42Triosephosphate isomerase OS=Entamoeba histolytica... [more]
TPIS_LEIME2.660e-5250.99Triosephosphate isomerase OS=Leishmania mexicana P... [more]
TPIS_TAESO4.520e-5257.41Triosephosphate isomerase OS=Taenia solium PE=2 SV... [more]
TPIS_PARBA7.680e-5251.70Triosephosphate isomerase OS=Paracoccidioides bras... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6405 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740263 ID=CK740263; Name=CK740263; organism=Citrus sinensis; type=EST; length=721bp
AAGTGAAAAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCT
GATGTCGTTGAGGTCGTTGTTAGCCCTCCGTTTCTGTTTCTTGGACTGGT
GAAGAGTTCGTTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGG
TCAAGAAGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTC
AATTTGGGTATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCAT
TTTGAATGAATCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTT
CTCAAGGTTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGT
GAAGCAGGATCTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGC
AGATCGAGTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGT
GGGCTATTGGAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTA
CATTTTGAACTGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATTGC
TGCAGCAACACGGATCATCTACGGAGGATCCGTAAATGGTGCAACTGCAA
GGAATTGGCTGCACAGCCTGATGTTGACGGATTTTTGGTTGGTGGTGCTT
CGTTGAACCGGAGTTCATTGACATCATCAATCTGCTGAGCTGAAGTAAAA
TCTTGAGCTTTATTTCAAGGG
back to top