CK932589

Overview
NameCK932589
Unique NameCK932589
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1793 contig Csv1_Contig1793:145..760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932589 vs. ExPASy Swiss-Prot
Match: GLRX_PSEAE (Glutaredoxin OS=Pseudomonas aeruginosa GN=grx PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 34/83 (40.96%), Postives = 52/83 (62.65%), Query Frame = 2
Query:  134 VVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHVGGCDSTTALHREGKLVPLLT 382
            VV+++  +CP+C+  K+L Q+ GV F+ I  + + +   +++ LA   G  TVP ++IG  HVGGCD   AL R GKL  LL+
Sbjct:    4 VVIYTTAWCPYCIRAKQLLQRKGVDFQEIACDGKPE---LRAELARKAGSTTVPQIWIGETHVGGCDDLHALERAGKLDALLS 83          
BLAST of CK932589 vs. ExPASy Swiss-Prot
Match: GRC14_ORYSJ (Putative glutaredoxin-C14 OS=Oryza sativa subsp. japonica GN=GRXC14 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12
Identity = 38/101 (37.62%), Postives = 60/101 (59.41%), Query Frame = 2
Query:   98 LPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQ-KTVPNVFIGGKHVGGCDSTTALHREGKLVPLLTEAGAV 397
            + +  +  S  +VV+F+ + C  C +V  LF  LGV     EL+++  G +++ AL +  G+   VP VFIGGK VGG +   +LH  G+L+P+L  AGA+
Sbjct:    1 MDRVMKLASERAVVIFTLSSCCMCHTVTRLFCDLGVNALVHELDQDPRGKEMERALLKLLGRGPPVPVVFIGGKLVGGTNKIMSLHLGGELIPMLKNAGAL 101          
BLAST of CK932589 vs. ExPASy Swiss-Prot
Match: GLRX1_RABIT (Glutaredoxin-1 OS=Oryctolagus cuniculus GN=GLRX PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12
Identity = 40/104 (38.46%), Postives = 58/104 (55.77%), Query Frame = 2
Query:  107 AQETVSSN----SVVVFSKTFCPFCVSVKELFQQLGVT---FKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHVGGCDSTTALHREGKLVPLLTEAGAV 397
            AQE V+S      VVVF K  CP+C   +E+  QL       + +++   SD S+IQ  L + TG +TVP VF+G   +GGC    A+  +G+L+  L E GA+
Sbjct:    1 AQEFVNSKIQPGKVVVFIKPTCPYCRKTQEILSQLPFKQGLLEFVDITATSDMSEIQDYLQQLTGARTVPRVFLGKDCIGGCSDLIAMQEKGELLARLKEMGAL 104          
BLAST of CK932589 vs. ExPASy Swiss-Prot
Match: GRC15_ORYSJ (Glutaredoxin-C15 OS=Oryza sativa subsp. japonica GN=GRXC15 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.730e-11
Identity = 40/94 (42.55%), Postives = 55/94 (58.51%), Query Frame = 2
Query:  122 SSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKES-DGSDIQSALAEWTGQKT-VPNVFIGGKHVGGCDSTTALHREGKLVPLLTEAGAV 397
            +  +VV+F+ + CP C +V  LF  LGV     EL+++   G D++  LA   G+   VP VFI GK VG  D   +LH  GKLVP+L  AGA+
Sbjct:    9 TEKAVVIFTASNCPMCHTVVSLFSDLGVGAAVHELDRDPLHGRDMERDLARRLGRSPPVPAVFIAGKLVGSTDRVMSLHLAGKLVPMLKAAGAI 102          
BLAST of CK932589 vs. ExPASy Swiss-Prot
Match: GRC11_ORYSJ (Putative glutaredoxin-C11 OS=Oryza sativa subsp. japonica GN=GRXC11 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 39/98 (39.80%), Postives = 55/98 (56.12%), Query Frame = 2
Query:  122 SSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAE------WTGQKTVPNVFIGGKHVGGCDSTTALHREGKLVPLLTEAGAV 397
            S  +VVVF+K+ C  C +V  L  +L V+    EL+++  G +++  LA         G   VP VFIGG  VGG     A+H +G+LVPLL  AGA+
Sbjct:   10 SERAVVVFTKSGCCMCTAVTTLLGELAVSAAVHELDRDPLGKEMEKELARRLYGSSGRGGPAVPAVFIGGSLVGGTSKVMAMHLKGELVPLLKSAGAL 107          
BLAST of CK932589 vs. ExPASy Swiss-Prot
Match: GRXC8_ARATH (Glutaredoxin-C8 OS=Arabidopsis thaliana GN=GRXC8 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 41/108 (37.96%), Postives = 58/108 (53.70%), Query Frame = 2
Query:   98 LPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKT--------VPNVFIGGKHVGGCDSTTALHREGKLVPLLTEAGAV 397
            L K +   + N+VV+FS + C  C ++K LF+ +GV+    EL+    G +I  AL    G  +        +P VFIGGK VG  +   A H  G LVPLL +AGA+
Sbjct:   31 LAKIESMAAENAVVIFSVSTCCMCHAIKRLFRGMGVSPAVHELDLLPYGVEIHRALLRLLGCSSGGATSPGALPVVFIGGKMVGAMERVMASHINGSLVPLLKDAGAL 138          
BLAST of CK932589 vs. ExPASy Swiss-Prot
Match: GLRX1_BOVIN (Glutaredoxin-1 OS=Bos taurus GN=GLRX PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 36/105 (34.29%), Postives = 54/105 (51.43%), Query Frame = 2
Query:   92 MALPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVT---FKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHVGGCDSTTALHREGKLVPLLTEAGAV 397
            MA       +    VVVF K  CP+C   +EL  QL       + +++    + S+IQ  L + TG +TVP VFIG + +GGC     +H  G+L+  L + GA+
Sbjct:    1 MAQAFVNSKIQPGKVVVFIKPTCPYCRKTQELLSQLPFKQGLLEFVDITAAGNISEIQDYLQQLTGARTVPRVFIGQECIGGCTDLVNMHERGELLTRLKQMGAL 105          
BLAST of CK932589 vs. ExPASy Swiss-Prot
Match: GRS11_ARATH (Monothiol glutaredoxin-S11 OS=Arabidopsis thaliana GN=GRXS11 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 36/94 (38.30%), Postives = 52/94 (55.32%), Query Frame = 2
Query:   98 LPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHVGGCDSTTALHREGKLVPLL 379
            + K     S   VV+F+K+ C    +V+ LFQ LGV  K  E++K+ +  +I+ AL      K VP VFIGGK VG  +   ++H    LVPL+
Sbjct:    1 MDKVMRMSSEKGVVIFTKSSCCLSYAVQVLFQDLGVNPKIHEIDKDPECREIEKALMRLGCSKPVPAVFIGGKLVGSTNEVMSMHLSSSLVPLV 94          
The following BLAST results are available for this feature:
BLAST of CK932589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
GLRX_PSEAE5.945e-1240.96Glutaredoxin OS=Pseudomonas aeruginosa GN=grx PE=3... [more]
GRC14_ORYSJ7.765e-1237.62Putative glutaredoxin-C14 OS=Oryza sativa subsp. j... [more]
GLRX1_RABIT7.765e-1238.46Glutaredoxin-1 OS=Oryctolagus cuniculus GN=GLRX PE... [more]
GRC15_ORYSJ1.730e-1142.55Glutaredoxin-C15 OS=Oryza sativa subsp. japonica G... [more]
GRC11_ORYSJ3.854e-1139.80Putative glutaredoxin-C11 OS=Oryza sativa subsp. j... [more]
GRXC8_ARATH6.573e-1137.96Glutaredoxin-C8 OS=Arabidopsis thaliana GN=GRXC8 P... [more]
GLRX1_BOVIN6.573e-1134.29Glutaredoxin-1 OS=Bos taurus GN=GLRX PE=1 SV=3[more]
GRS11_ARATH8.585e-1138.30Monothiol glutaredoxin-S11 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_H12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932589 ID=CK932589; Name=CK932589; organism=Citrus sinensis; type=EST; length=616bp
GGGGAAGTTCTCTCCTTTGTAAAGCCAAAGAGGATTTGAAGCTTATTTAG
GGTTTGTGAGATTTCGAATCAAAGACAAAGAAGACACAGAAATGGCTTTG
CCCAAGGCCCAGGAAACCGTTTCCTCCAATTCCGTCGTCGTTTTCAGCAA
AACGTTTTGTCCGTTCTGCGTGAGTGTCAAAGAGCTGTTTCAGCAACTCG
GAGTCACTTTCAAGGCCATTGAACTGAACAAAGAAAGTGATGGAAGTGAC
ATTCAATCAGCTCTAGCTGAGTGGACTGGACAGAAAACTGTTCCAAATGT
CTTCATCGGAGGGAAACACGTTGGTGGCTGCGATTCAACTACTGCACTGC
ACAGGGAAGGGAAGCTGGTTCCTCTGCTCACTGAAGCTGGAGCTGTTGCC
AAGACAGCTGCCTGATGGATGGCTATTGTCTGCCTGTTAATTCTAGTAAT
AAATAAAGAATGTGTTGGTAGTGCTTAATCTGTCTGAATTAAACATGAAA
TTATGCTTATTTGAGTAATTTCCAATGCACTTTTTTGTTCAGTTTCTGTT
TTATGTTGAAATCTGTATGAATTTTATCAGATTTTTCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAA
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