CK932592

Overview
NameCK932592
Unique NameCK932592
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1453 contig Csv1_Contig1453:1..891. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK932592 vs. ExPASy Swiss-Prot
Match: ESYT3_MOUSE (Extended synaptotagmin-3 OS=Mus musculus GN=Esyt3 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.300e-11
Identity = 53/228 (23.25%), Postives = 103/228 (45.18%), Query Frame = 3 
Query:  189 RSKLRSELATTIAAFARMTVEDS--KKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIED--GGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFTLKVVGGDISTIPGLSDSIEATIHDAIEDXITWPVRKIVPXXPG 860
            R   R +L    AAF  +  E     + L  +  P+W+ F   +++ W N  + ++WPY++      I+  +EP + + +   L +  F+K   G   P+  GV +  D      VT++L++ +  +  I + ++   G    VQ++     G  R+I  PL+ + P   AV+    +K  L      +  ++  +PG+++  ++ + D I   +  P R  VP   G
Sbjct:   77 RRNRRGKLGRLEAAFEFLEHEREFISRELRGQHLPAWIHFPDVERVEWANKIIIQIWPYLSMIMENKIREKLEPKIRE-KSIHLRTFTFTKLYFGQKCPKVNGVKVHTDKRNRRKVTLDLQICYIGDCEISVELQKIRGGVSGVQLQ-----GTLRVILEPLLVDKPFIGAVTVFFLQKPHLQINWTGL-TNLLDMPGINELSDSLLEDLIAAHLVLPNRVTVPVKKG 297
The following BLAST results are available for this feature:
BLAST of CK932592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
ESYT3_MOUSE4.300e-1123.25Extended synaptotagmin-3 OS=Mus musculus GN=Esyt3 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004531_H04 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932592 ID=CK932592; Name=CK932592; organism=Citrus sinensis; type=EST; length=891bp
GGGGACAGAAGAAAGAGAAGAACAGCTCTTCTTCTAACTTCTTCCAACTC
CCGAAACCAACCGCAGGGACTCACAGATAGATAGTTACTGAATTTCTCGC
GAGCAAAATGGGATTTGTTTTCGGGCTAGTTGTCGGGCTAGTGGTCGGGC
TTGGAATTGTCGTCGGATTCGTGCGATCGGAGAATGCGCGATCCAAGCTC
CGCTCTGAACTTGCAACAACAATAGCGGCGTTTGCACGGATGACAGTGGA
AGATTCTAAAAAGATCTTGCCGGCCGAGTTCTATCCATCTTGGGTGGTCT
TCTCGCATCGCCAGAAGTTGACTTGGCTTAATCATCATCTTGAGAAGCTC
TGGCCCTATGTCAATGAGGCAGCTTCTGAGCTGATAAAGTCATCGGTAGA
GCCAGTGCTAGAACAATATAGGCCGTTTATATTGTCTTCTCTCAAGTTTT
CCAAATTCACTCTTGGTACCGTTGCGCCCCAATTTACAGGAGTTTCAATT
ATTGAAGACGGAGGCAGTGGCGTTACCATGGAGTTGGAAATGCAGTGGGA
TGCTAATTCAAGTATAATACTTGCAATCAAGACCAGACTTGGGGTGGCGC
TACCTGTGCAGGTGAAAAACATTGGATTCACTGGAGTTTTCAGATTGATC
TTTAGGCCGCTAGTGGACGAATTTCCTGGCTTTGCAGCTGTTAGTTATTC
TCTAAGAGAGAAGAAAAAGTTGGATTTTACACTTAAAGTTGTTGGTGGTG
ACATATCAACTATTCCTGGACTTTCTGATTCTATTGAGGCAACCATACAT
GATGCAATTGAAGACTNCATCACTTGGCCAGTTAGGAAAATTGTTCCTNN
NNTGCCTGGGGATTACAGTGAACTTGAGTTGAAGCCCGTGG
back to top