CK932674

Overview
NameCK932674
Unique NameCK932674
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932674 vs. ExPASy Swiss-Prot
Match: MCTS1_DANRE (Malignant T cell amplified sequence 1 OS=Danio rerio GN=mcts1 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.550e-46
Identity = 91/171 (53.22%), Postives = 119/171 (69.59%), Query Frame = 1
Query:  133 EEVSAQNQVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHXXXXXXXXXPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQRALAIGFTKMSAKDIKAINKGIGVDNMHYLNDGLWKME 645
            E VS   Q+K SV + I+  + D++P ++  L+ ++PKK P+ + +C  H          LFF  R+GP+ PTLRLLH+YP I+   QVD+GAIKFVLSGANIMCPGLTSPG  L     ++T VAIMAEGKQ AL +G  KMSA DI+ +N GIG++N+HYLNDGLW M+
Sbjct:    9 ENVSNCIQLKTSVIKGIKNQLLDQFPNIDDWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKL-YPAESDTVVAIMAEGKQHALCVGVMKMSADDIEKVNMGIGIENVHYLNDGLWHMK 178          
BLAST of CK932674 vs. ExPASy Swiss-Prot
Match: TMA20_SCHPO (Translation machinery-associated protein 20 OS=Schizosaccharomyces pombe GN=tma20 PE=2 SV=5)

HSP 1 Score: 170.244 bits (430), Expect = 1.109e-41
Identity = 80/171 (46.78%), Postives = 115/171 (67.25%), Query Frame = 1
Query:  127 SAEEVSAQNQVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHXXXXXXXXXPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQRALAIGFTKMSAKDIKAINKGIGVDNMHYLNDGLWK 639
            S E++     +K+S+QR I+  +   YP L+ V+D+L+PKKS L   KC++           + F   DGP +P+LRL+H+ P+   +++VDRGAIKF+LSGANIM PGL S GG+L +++  +  V + AEGK+   AIG TKMSAK++K  NKGIG++N+HYL D LWK
Sbjct:    7 SREDIKGTTPIKSSIQRGIKAKLVQAYPNLKQVIDELIPKKSQLTQIKCEDRLFLYTLNGEIILFQHFDGPIIPSLRLVHKCPDAFTQVRVDRGAIKFLLSGANIMIPGLVSKGGNLPDDIEKDQYVIVTAEGKEAPAAIGLTKMSAKEMKETNKGIGIENVHYLGDNLWK 177          
BLAST of CK932674 vs. ExPASy Swiss-Prot
Match: TMA20_ASHGO (Translation machinery-associated protein 20 OS=Ashbya gossypii GN=TMA20 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.556e-38
Identity = 82/172 (47.67%), Postives = 113/172 (65.70%), Query Frame = 1
Query:  127 SAEEVSAQNQVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHXXXXXXXXXPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVG--AETPVAIMAEGKQRALAIGFTKMSAKDIKAINKGIGVDNMHYLNDGLW 636
            S E++  + +VK SVQR ++  + +++P LE V+D+LLPKK+ L + KC +           LFF  +    +PTLR +H+YP     +Q+DRGAIKFVLSGANIMCPGLTS G +L E  G   ++ V + AE K+ ALAIG   MS +DIK+INKG GV+ +H+L D LW
Sbjct:    6 SKEDIHTRTKVKTSVQRSLKSKLVEQFPKLEEVIDELLPKKTELQIIKCSDKIQLYAVGDEVLFFQ-KFEELIPTLRFVHKYPEAFPTIQIDRGAIKFVLSGANIMCPGLTSSGAALPEAPGLAQDSIVVVNAENKENALAIGKLLMSTEDIKSINKGHGVETIHHLGDCLW 176          
BLAST of CK932674 vs. ExPASy Swiss-Prot
Match: TMA20_YEAST (Translation machinery-associated protein 20 OS=Saccharomyces cerevisiae GN=TMA20 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.645e-35
Identity = 77/170 (45.29%), Postives = 112/170 (65.88%), Query Frame = 1
Query:  133 EEVSAQNQVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHXXXXXXXXXPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAE--TPVAIMAEGKQRALAIGFTKMSAKDIKAINKGIGVDNMHYLNDGLW 636
            E+V ++++VK+S+QR ++  +  +YP +E V+D+L+PKKS + + KC++           LFF   D   +P+L+L+H++P     +QVDRGAIKFVLSGANIMCPGLTS G  L    G E  T V I AE K+ ALAIG   M  ++IK++NKG  ++ +H+L D LW
Sbjct:    8 EDVHSRSKVKSSIQRTLKAKLVKQYPKIEDVIDELIPKKSQIELIKCEDKIQLYSVDGEVLFFQKFD-ELIPSLKLVHKFPEAYPTVQVDRGAIKFVLSGANIMCPGLTSAGADLPPAPGYEKGTIVVINAENKENALAIGELMMGTEEIKSVNKGHSIELIHHLGDPLW 176          
BLAST of CK932674 vs. ExPASy Swiss-Prot
Match: Y1432_METJA (Uncharacterized protein MJ1432 OS=Methanocaldococcus jannaschii GN=MJ1432 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.854e-13
Identity = 41/140 (29.29%), Postives = 76/140 (54.29%), Query Frame = 1
Query:  226 LDDLLPKKSPLIVAKCQNHXXXXXXXXXPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQRALAIGFTKMSAKDIKAINKGIGVDNMHYLNDGLWKME 645
            +D+++PKK  + +A   +          P+ F  +D   +PTL+LL +       + VD GAIKF+++GA++M PG+       DE +  E  V ++ E  ++ + +G   M+ K++K  +KG  + N+HY+ D +W  +
Sbjct:   28 VDEIIPKKGNVEIA-ITDDFEIILVDKEPIAFK-KDDKVIPTLKLLLKSLPDKNLVVVDIGAIKFLINGADVMAPGIVDA----DENIKEEDVVFVVDENHKKPICVGIALMNGKEMKEADKGKAIKNLHYVGDKIWNFK 161          
The following BLAST results are available for this feature:
BLAST of CK932674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
MCTS1_DANRE2.550e-4653.22Malignant T cell amplified sequence 1 OS=Danio rer... [more]
TMA20_SCHPO1.109e-4146.78Translation machinery-associated protein 20 OS=Sch... [more]
TMA20_ASHGO2.556e-3847.67Translation machinery-associated protein 20 OS=Ash... [more]
TMA20_YEAST2.645e-3545.29Translation machinery-associated protein 20 OS=Sac... [more]
Y1432_METJA4.854e-1329.29Uncharacterized protein MJ1432 OS=Methanocaldococc... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004530_H05 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932674 ID=CK932674; Name=CK932674; organism=Citrus sinensis; type=EST; length=780bp
GGGGATCGGCAAAAGAGCAACTCAAGCAAGGAGAAGAGAGGCTTTAGATC
GAACCCAACACACCAAAATCCTTCTACTTCAGTATTTCAAGCTTTTTTCT
TCAAAACAACAATGTTCAAAAAGTTTTCGGCGGAAGAAGTGTCGGCACAG
AACCAAGTCAAGGCATCTGTCCAGCGCAAAATTCGGCAAAGCATTGCAGA
TGAGTACCCAGGACTTGAGCCAGTGTTGGATGATTTGCTTCCTAAGAAGT
CTCCTCTGATTGTTGCTAAATGTCAAAATCATCTGAATCTCGTTCTGGTG
AATAATGTTCCGTTGTTTTTCAATATCCGTGACGGGCCTTACATGCCTAC
GCTAAGGCTCCTTCATCAATATCCAAATATAATGAAGAAGTTACAAGTAG
ACCGGGGTGCCATAAAGTTTGTCCTTTCTGGTGCAAACATAATGTGCCCT
GGTCTTACATCACCCGGTGGATCTTTGGATGAAGAAGTTGGAGCAGAAAC
TCCTGTGGCCATAATGGCTGAAGGAAAGCAACGTGCTCTTGCTATTGGGT
TTACAAAAATGTCAGCTAAAGACATAAAGGCAATTAACAAGGGAATCGGG
GTGGATAACATGCATTATCTCAATGATGGCCTTTGGAAGATGGAGCGTCT
AGAATGAGGATGTGCCAAGAGCAGCAGCAGTACCATTCTTGTAACAGAAG
AAAGAACTTAAATTATATGTTTCATCTTTTTGCTGTTACTTTTTTTCTGT
TTTTCCCCTAACTGTTTGTTTCAAGCTAAA
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