CK932713

Overview
NameCK932713
Unique NameCK932713
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932713 vs. ExPASy Swiss-Prot
Match: DRP3B_ARATH (Dynamin-related protein 3B OS=Arabidopsis thaliana GN=DRP3B PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.407e-29
Identity = 78/193 (40.41%), Postives = 111/193 (57.51%), Query Frame = 2
Query:  182 LPPPSPEIST*LREKMENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGS-----REYAEFLHI-PRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK 742
            LPP S    T L     ++I +VNK+Q     LG     +        LP +A            LE++VG+DFLPRG+ I TRRPL LQL + +  S      E+ EFLH  P +R  DF+ +R+EI+ ET+R +G  K +S +PI L I+SPNV++++L+DLPG+TKV V  QP  I   I  M+ +YI++
Sbjct:    6 LPPSSASAVTPLGS---SVIPIVNKLQDIFAQLGSQSTIA--------LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLRLQLVQTKPSSDGGSDEEWGEFLHHDPVRRIYDFSEIRREIEAETNRVSGENKGVSDIPIGLKIFSPNVLDISLVDLPGITKVPVGDQPSDIEARIRTMILTYIKE 187          
BLAST of CK932713 vs. ExPASy Swiss-Prot
Match: YB68_SCHPO (Dynamin-like protein C12C2.08 OS=Schizosaccharomyces pombe GN=SPBC12C2.08 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.450e-29
Identity = 85/208 (40.87%), Postives = 107/208 (51.44%), Query Frame = 2
Query:  227 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKL-------------------------EEGSRE-----------YAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK 742
            ME LI LVN++Q            + + + +  LP+I             LE+IVGKDFLPRG+GIVTRRPL+LQL  L                         E GS E           YAEFLHIP  +FTD   VR EI++ET R  G  K I+ +PI+L IYS  V+NLTLIDLPGLTK+ V  QP  I     +++  YI +
Sbjct:    1 MEQLIPLVNQLQDLVY--------NTIGSDFLDLPSIVVVGSQSCGKSSVLENIVGKDFLPRGTGIVTRRPLILQLINLKRKTKNNHDEESTSDNNSEETSAAGETGSLEGIEEDSDEIEDYAEFLHIPDTKFTDMNKVRAEIENETLRVAGANKGINKLPINLKIYSTRVLNLTLIDLPGLTKIPVGDQPTDIEAQTRSLIMEYISR 200          
BLAST of CK932713 vs. ExPASy Swiss-Prot
Match: DYNB_DICDI (Dynamin-B OS=Dictyostelium discoideum GN=dymB PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.393e-28
Identity = 77/194 (39.69%), Postives = 104/194 (53.61%), Query Frame = 2
Query:  233 NLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSR--------------------------EYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI 736
            +L+ ++NK+Q     +G             +LP I             LE++VG+DFLPRGSG+VTRRPLVLQL++    SR                          E+ EF H    RF +F  +++EI+ ET+R  G  K ISS PI L IYSP VV LTL+DLPGLT+VA+E QP  I + I++M+  YI
Sbjct:  136 SLLPIINKLQENAALIGSE----------ITLPQIIVVGSQSSGKSSVLENLVGRDFLPRGSGLVTRRPLVLQLYQTTTTSRNNVNENEDEDEDDNYYDNDNDDNSLEEWGEFGHTGTNRF-NFQEIKEEIERETERIAGPNKDISSEPIVLKIYSPKVVPLTLVDLPGLTRVAIEDQPPDIEEKIKSMIIDYI 318          
BLAST of CK932713 vs. ExPASy Swiss-Prot
Match: MX_PERFL (Interferon-induced GTP-binding protein Mx (Fragment) OS=Perca fluviatilis GN=mx PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.586e-18
Identity = 58/141 (41.13%), Postives = 83/141 (58.87%), Query Frame = 2
Query:  323 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIP-RKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK 742
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ + +EG   Y +  +    K   D A V K+I+D  D   G    IS   I L I SP+V +LTLIDLPG+ +VAV+GQP++I   I+ +++ +I++
Sbjct:   34 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLELKMKRRQEGEEWYGKISYQDCEKEIEDPADVEKKIRDAQDEMAGVGVGISDDLISLEIASPDVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIQKFIKR 173          
BLAST of CK932713 vs. ExPASy Swiss-Prot
Match: MX_DICLA (Interferon-induced GTP-binding protein Mx OS=Dicentrarchus labrax GN=mx PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.534e-18
Identity = 57/141 (40.43%), Postives = 83/141 (58.87%), Query Frame = 2
Query:  323 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIP-RKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK 742
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ +  EG   Y +  +I   +   D A V K+I++  ++  G    IS   I L I SP+V +LTLIDLPG+ +VAV+GQP++I   I+ +++ +I K
Sbjct:   32 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLELKMKRKNEGEEWYGKITYIGFEENIKDPADVEKKIREAQNKIAGPGSGISEDLISLEIASPDVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIQKFITK 171          
BLAST of CK932713 vs. ExPASy Swiss-Prot
Match: MX1_SHEEP (Interferon-induced GTP-binding protein Mx1 OS=Ovis aries GN=MX1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.616e-18
Identity = 70/174 (40.23%), Postives = 91/174 (52.30%), Query Frame = 2
Query:  221 EKMENLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRK-RFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI 736
            E   NL S   +  R C  L D     AL    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KLE+      +   + R+   +D + V KEI +      G    IS   I L + SP+V +LTLIDLPG+T+VAV  QP  I   I++++R YI
Sbjct:   31 ESKGNLYSQYEEKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLRLKKLEKEGEWKGKVSFLDREIEISDASQVEKEISEAQIAIAGEGMGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPHDIEYQIKSLIRKYI 201          
BLAST of CK932713 vs. ExPASy Swiss-Prot
Match: MX1_RAT (Interferon-induced GTP-binding protein Mx1 OS=Rattus norvegicus GN=Mx1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.028e-17
Identity = 67/176 (38.07%), Postives = 96/176 (54.55%), Query Frame = 2
Query:  221 EKMENLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRK-RFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK 742
            E ++NL S   +  R C  L D     AL    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L +L++G +   + ++   +   +  + V +EI    +   G   +ISS  I L + SP+V +LTLIDLPG+T+VAV  QP  I   I+ ++  YI+K
Sbjct:   27 ESVDNLCSQYEEKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKQLKQGEKWSGKVIYKDTEIEISHPSLVEREINKAQNLIAGEGLKISSDLISLEVSSPHVPDLTLIDLPGITRVAVGDQPADIEHKIKRLITEYIQK 199          
BLAST of CK932713 vs. ExPASy Swiss-Prot
Match: MX2_MOUSE (Interferon-induced GTP-binding protein Mx2 OS=Mus musculus GN=Mx2 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.754e-17
Identity = 69/177 (38.98%), Postives = 94/177 (53.11%), Query Frame = 2
Query:  218 REKMENLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRK-RFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK 742
            +E + NL S   +  R C  L D     AL    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL EG     +  +   +   +D + V + I    +   G    IS   I L + SPNV +LTLIDLPG+T+VAV  QP  I + I+ ++++YI+K
Sbjct:   28 QESVNNLCSQYEEKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLRKLNEGEEWRGKVSYDDIEVELSDPSEVEEAINKGQNFIAGVGLGISDKLISLDVSSPNVPDLTLIDLPGITRVAVGNQPADIGRQIKRLIKTYIQK 201          
BLAST of CK932713 vs. ExPASy Swiss-Prot
Match: MX_SINCH (Interferon-induced GTP-binding protein Mx OS=Siniperca chuatsi GN=mx PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.291e-17
Identity = 57/141 (40.43%), Postives = 82/141 (58.16%), Query Frame = 2
Query:  323 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKR-FTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK 742
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ + +EG   Y +  +   +    D A V K+I++  D   G    IS   I L I SP V +LTLIDLPG+ +VAV+GQP++I   I+ +++++I K
Sbjct:   32 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLELKMKRKKEGEEWYGKISYQNHEEEIEDPADVEKKIREAQDEMAGVGVGISDDLISLEIGSPGVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIQTFITK 171          
BLAST of CK932713 vs. ExPASy Swiss-Prot
Match: MXB_DANRE (Interferon-induced GTP-binding protein MxB OS=Danio rerio GN=mxb PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.992e-17
Identity = 57/141 (40.43%), Postives = 81/141 (57.45%), Query Frame = 2
Query:  323 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKR-FTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK 742
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ + +E  + +    +   +  F D A V K+I++  D   G    IS   I L I S NV +LTLIDLPG+ +VAV+GQP++I   I+ ++R +I K
Sbjct:   36 ALPAIAVIGDQSSGKSSVLEALSGVP-LPRGSGIVTRCPLELKMIRSKEDEKWHGRISYQNHEEDFDDPAEVEKKIREAQDEMAGAGVGISEELISLQITSANVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIRMFITK 175          
The following BLAST results are available for this feature:
BLAST of CK932713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
DRP3B_ARATH3.407e-2940.41Dynamin-related protein 3B OS=Arabidopsis thaliana... [more]
YB68_SCHPO4.450e-2940.87Dynamin-like protein C12C2.08 OS=Schizosaccharomyc... [more]
DYNB_DICDI8.393e-2839.69Dynamin-B OS=Dictyostelium discoideum GN=dymB PE=3... [more]
MX_PERFL1.586e-1841.13Interferon-induced GTP-binding protein Mx (Fragmen... [more]
MX_DICLA3.534e-1840.43Interferon-induced GTP-binding protein Mx OS=Dicen... [more]
MX1_SHEEP4.616e-1840.23Interferon-induced GTP-binding protein Mx1 OS=Ovis... [more]
MX1_RAT1.028e-1738.07Interferon-induced GTP-binding protein Mx1 OS=Ratt... [more]
MX2_MOUSE1.754e-1738.98Interferon-induced GTP-binding protein Mx2 OS=Mus ... [more]
MX_SINCH2.291e-1740.43Interferon-induced GTP-binding protein Mx OS=Sinip... [more]
MXB_DANRE2.992e-1740.43Interferon-induced GTP-binding protein MxB OS=Dani... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004530_E03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932713 ID=CK932713; Name=CK932713; organism=Citrus sinensis; type=EST; length=743bp
GGGGTCAACAGCCTCCCCACTTTCTTTTAAATTTCAAACTCTCTCTCTCT
CTCTCTCTCTCTCTCGTTTGTCCTACCGGCGAAGCAAAAACTAATCACAC
AGATCTCCTCTGAACGTCGCCGTTTCCAGCATCAGTTGTCAGATCCAGCT
GATCTGAATCTGACAGCTGAGATCATCTACGTTGCCGCCGCCGTCTCCCG
AGATATCTACTTAGCTGCGAGAGAAAATGGAGAACTTGATTTCTTTGGTT
AACAAAATACAAAGAGCTTGTACGGCTCTTGGCGACCACGGTGAAGCCAG
CGCATTGCCTACTCTTTGGGACTCTCTTCCTGCTATCGCCGTCGTCGGTG
GCCAGAGTTCTGGAAAGTCATCAGTGTTGGAGAGTATTGTTGGCAAGGAC
TTTTTACCGCGTGGATCTGGTATCGTTACACGGCGTCCTCTGGTGTTGCA
GCTTCATAAACTCGAAGAAGGCAGCAGAGAATATGCAGAGTTTCTTCACA
TTCCAAGGAAAAGATTTACCGATTTTGCTGCTGTGAGGAAAGAGATTCAA
GATGAGACTGATAGAGAGACTGGTCGTACCAAACAAATCTCGAGTGTACC
AATTCATCTCAGCATATATTCCCCTAATGTTGTCAACTTAACGCTGATTG
ATCTTCCTGGGCTCACAAAAGTAGCAGTTGAGGGTCAACCAGACAGTATT
GTGCAAGATATTGAGAATATGGTTCGCTCCTACATTGAGAAGC
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