CK932734

Overview
NameCK932734
Unique NameCK932734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932734 vs. ExPASy Swiss-Prot
Match: MAD33_ORYSJ (MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.243e-14
Identity = 54/161 (33.54%), Postives = 93/161 (57.76%), Query Frame = 3
Query:   42 IENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTL---RIDLWSSHYEKMLE-NLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKE-NKSLQD 509
            IEN  +RQVTF KRR GL KKAREL++LCDA V ++I SS  K HE ++ +     L++ YQ  +   +++  +   +++ E  +  + +   +L++ +R   G    ++TL++L  LE+ +   +  I   K Q++ ++I  F R   G+ KE N+ LQ+
Sbjct:   11 IENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHE-LATNGNMHNLVERYQSNVAGGQMEPGALQRQQVAEQGIFLLREEIDLLQRGLRSTYGGGAGEMTLDKLHALEKGLELWIYQIRTTKMQMMQQEIQ-FLRNKEGILKEANEMLQE 169          
BLAST of CK932734 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSJ (MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica GN=MADS26 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.120e-14
Identity = 52/162 (32.10%), Postives = 92/162 (56.79%), Query Frame = 3
Query:   42 IENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRIDLWSSHYEKM--LENLGAVEQVNRILKKQIRQRMGESLND-LTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFI 518
            IEN  +RQVTF KRR GL KKAREL+ILC+A + I+I S+  K ++ ++ + T ++L++ Y+        +   ++M   +    ++Q   +L+K +R   G   N+ +T+EEL  LE+ +   +  I   K Q++ ++I   K K   ++  N+ LQ+  +
Sbjct:   11 IENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYD-LATTGTMEELIERYKSASGEQANACGDQRMDPKQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGMLKAANEILQEKIV 171          
BLAST of CK932734 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSI (MADS-box transcription factor 26 OS=Oryza sativa subsp. indica GN=MADS26 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.120e-14
Identity = 52/162 (32.10%), Postives = 92/162 (56.79%), Query Frame = 3
Query:   42 IENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRIDLWSSHYEKM--LENLGAVEQVNRILKKQIRQRMGESLND-LTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFI 518
            IEN  +RQVTF KRR GL KKAREL+ILC+A + I+I S+  K ++ ++ + T ++L++ Y+        +   ++M   +    ++Q   +L+K +R   G   N+ +T+EEL  LE+ +   +  I   K Q++ ++I   K K   ++  N+ LQ+  +
Sbjct:   11 IENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYD-LATTGTMEELIERYKSASGEQANACGDQRMDPKQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGMLKAANEILQEKIV 171          
BLAST of CK932734 vs. ExPASy Swiss-Prot
Match: AGL13_ARATH (Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana GN=AGL13 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 8.056e-14
Identity = 58/197 (29.44%), Postives = 104/197 (52.79%), Query Frame = 3
Query:   42 IENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRIDLWSSHYEKMLENLGAVEQVNRI------LKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYEYELVDN---GEHCDSDFGFQN 605
            IEN   RQVTFSKR++GL KKA EL++LCDA+VS++I S+  K +E+   +    + ++ Y +  + +L  +  + + +  G  ++V ++      L +  R  +GE L  ++++EL  LE+ +   L    + K QV+  Q+   +RK R +   N  L+    +  ++ D     +L+ N      C +DF  Q+
Sbjct:   11 IENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEF--SNVGVGRTIERYYR-CKDNLLDN--DTLEDTQGLRQEVTKLKCKYESLLRTHRNLVGEDLEGMSIKELQTLERQLEGALSATRKQKTQVMMEQMEELRRKERELGDINNKLK----LETEDHDFKGFQDLLLNPVLTAGCSTDFSLQS 198          
BLAST of CK932734 vs. ExPASy Swiss-Prot
Match: AGL31_ARATH (Agamous-like MADS-box protein AGL31 OS=Arabidopsis thaliana GN=AGL31 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.795e-13
Identity = 45/160 (28.12%), Postives = 90/160 (56.25%), Query Frame = 3
Query:   42 IENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRIDLWSSHYEKMLENLGAVEQVNRILKKQ-----IRQRMGES-LNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSL 503
            IEN ++RQVTFSKRRNGL +KAR+L+ILC++ +++L+ S + K ++  S    +K           ID +  H+   LE L   E+    L  +     ++ ++ ES +++ +++ L  LE+ +   L +    K +++  ++ + ++    +++EN++L
Sbjct:   11 IENKSSRQVTFSKRRNGLIEKARQLSILCESSIAVLVVSGSGKLYKSASGDNMSK----------IIDRYEIHHADELEALDLAEKTRNYLPLKELLEIVQSKLEESNVDNASVDTLISLEEQLETALSVTRARKTELMMGEVKSLQKTENLLREENQTL 160          
BLAST of CK932734 vs. ExPASy Swiss-Prot
Match: AGL12_ARATH (Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.163e-12
Identity = 54/166 (32.53%), Postives = 86/166 (51.81%), Query Frame = 3
Query:   42 IENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRIDLWSSH----YEKMLE--NLGAVEQVN------RILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSL 503
            IEN  +RQVTF KRR GL KKA+EL++LCDA++ ++I S   K  E ++   T + ++D Y K       SS      ++ L+  NL   +++N       +L+K I    G     + LEEL  LE+ +   +  I   K  V+ ++I + + K   ++  NK L
Sbjct:   11 IENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFE-LATKGTMEGMIDKYMKCTGGGRGSSSATFTAQEQLQPPNLDPKDEINVLKQEIEMLQKGISYMFGGGDGAMNLEELLLLEKHLEYWISQIRSAKMDVMLQEIQSLRNKEGVLKNTNKYL 175          
The following BLAST results are available for this feature:
BLAST of CK932734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
MAD33_ORYSJ1.243e-1433.54MADS-box transcription factor 33 OS=Oryza sativa s... [more]
MAD26_ORYSJ2.120e-1432.10MADS-box transcription factor 26 OS=Oryza sativa s... [more]
MAD26_ORYSI2.120e-1432.10MADS-box transcription factor 26 OS=Oryza sativa s... [more]
AGL13_ARATH8.056e-1429.44Agamous-like MADS-box protein AGL13 OS=Arabidopsis... [more]
AGL31_ARATH1.795e-1328.13Agamous-like MADS-box protein AGL31 OS=Arabidopsis... [more]
AGL12_ARATH1.163e-1232.53Agamous-like MADS-box protein AGL12 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004530_C09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932734 ID=CK932734; Name=CK932734; organism=Citrus sinensis; type=EST; length=815bp
GGGGGGGGAAAATGGGTAGAGGAAAGATGGAGATGAAGAGGATTGAGAAC
GCAACGAACAGGCAGGTGACATTCTCAAAGAGACGAAATGGGCTTTTCAA
GAAAGCTCGTGAACTCACCATTCTCTGTGATGCCAAGGTTTCCATTCTCA
TCTGTTCAAGCACTGCTAAGGCCCATGAATACATCAGCCCTTCCACTACA
ACAAAGCAATTGCTTGATTTGTATCAGAAGACTTTAAGAATCGATCTTTG
GAGCTCTCATTATGAGAAAATGCTAGAGAATCTGGGGGCTGTGGAACAAG
TGAATAGGATTCTGAAGAAGCAAATTAGGCAGAGGATGGGTGAAAGCTTG
AACGATCTGACCTTGGAGGAATTGACTGGTCTTGAGCAAGATATCCTTGA
TGGTTTAAAGATTATTCATGAATGCAAGGATCAGGTGCTCGCGAGACAGA
TTAATACTTTCAAGAGAAAGGTAAGGGGTGTGCAAAAAGAGAACAAAAGT
CTTCAGGATGGATTTATCATTAATGCTAAAGAGGAGGATCCGCACTATGA
GTATGAGTTAGTTGATAACGGTGAGCATTGTGATTCTGATTTTGGATTCC
AAAATGAAGGTCCTGGCATATTTGCTTTACGCTTGCAGCCTAACTAAGCC
TAAAGTACCCAGTGGACGAAGACTGAGTAGCATGTGAGATGACTTAGCAT
TATCAATACATTAAGTTACCAACACACTATAAGTATGAGAATTTGATGAA
GTGTTTTAAATATGGTAAGAATCACCTTGTTTTAGCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA
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