CK932736

Overview
NameCK932736
Unique NameCK932736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932736 vs. ExPASy Swiss-Prot
Match: PSB3_BOVIN (Proteasome subunit beta type-3 OS=Bos taurus GN=PSMB3 PE=1 SV=3)

HSP 1 Score: 234.187 bits (596), Expect = 6.148e-61
Identity = 114/200 (57.00%), Postives = 152/200 (76.00%), Query Frame = 2
Query:  110 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRRKLYQLREERDMKPETXASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 706
            YNG A++AM GKNC AIA+DRR G+Q Q + TDFQ+I  + DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP T  S+V+ LLYEKRFGPY+ +PVIAGL  +  KPFIC++D IG   +  DFVV+GT  E +YG CE++++P+M+P+ LFET+SQA+L++VDRD +SG G  V+I+   +I  R LK RMD
Sbjct:    6 YNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCTEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD 205          
BLAST of CK932736 vs. ExPASy Swiss-Prot
Match: PSB3_DROME (Proteasome subunit beta type-3 OS=Drosophila melanogaster GN=Prosbeta3 PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 8.878e-60
Identity = 107/200 (53.50%), Postives = 147/200 (73.50%), Query Frame = 2
Query:  110 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRRKLYQLREERDMKPETXASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 706
            YNG  +VAM GK+C AIA+D R G+Q QTI+TDF+++  I  R+F+GL+GL TD  T+  RL+FR+ LY+ RE R+M P+  ++++S+ LYE RFGPYF +PV+AGL  +  +PFIC MD IG      DFVVAGT  E LYG CE ++KPD+EPD+LFE ++Q+++++ DRD +SGWG  VYI+   +I ER LK RMD
Sbjct:    6 YNGGCVVAMRGKDCVAIATDHRFGIQAQTISTDFKKVFHIGPRMFLGLTGLQTDILTVRDRLMFRKNLYETRENREMCPKPFSAMMSSFLYEHRFGPYFIEPVVAGLDPKTMEPFICNMDLIGCPNAPDDFVVAGTCAEQLYGMCETLWKPDLEPDQLFEVIAQSIVNAFDRDAMSGWGATVYIIEKDKITERTLKTRMD 205          
BLAST of CK932736 vs. ExPASy Swiss-Prot
Match: PSB3_CAEEL (Proteasome subunit beta type-3 OS=Caenorhabditis elegans GN=pbs-3 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.162e-53
Identity = 90/199 (45.23%), Postives = 139/199 (69.85%), Query Frame = 2
Query:  110 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRRKLYQLREERDMKPETXASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 706
            Y G  +VAM G  C  IASD R+G Q+ TIATD +++ K+ D++++GL+G  +D++T+ ++++FR+ LY+LRE R++KP+  + ++S L Y+ RFG YF +P++AGL D +KP+IC MD+IG     +DFV  GT  E L G CE  ++ +M+PDELFE  +Q++LS ++RD  SGWG  VY +T  ++    +K RMD
Sbjct:    6 YTGGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEKIMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYICCMDTIGCVSAPRDFVAVGTGQEYLLGVCENFWRENMKPDELFEATAQSILSCLERDAASGWGAVVYTITKDKVNVSTIKARMD 204          
BLAST of CK932736 vs. ExPASy Swiss-Prot
Match: PSB3_YEAST (Proteasome component PUP3 OS=Saccharomyces cerevisiae GN=PUP3 PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.058e-52
Identity = 100/199 (50.25%), Postives = 143/199 (71.86%), Query Frame = 2
Query:  113 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRRKLYQLREERDMKPETXASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 706
            NG  +VAM GK+C AIA D RLG Q   ++  F++I   +  +F+G++GLATD  TL +   ++  LY+L+EER ++PET   LVS+ LYE+RFGPYF  PV+AG++ +  KPFI   D IG  + AKDF+V+GTA + L+G CE++++P++EP++LFET+SQALL++ DRD LSGWG  VYI+   E+ +R LK R D
Sbjct:    8 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFH-YGHVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGAVVYIIKKDEVVKRYLKMRQD 205          
BLAST of CK932736 vs. ExPASy Swiss-Prot
Match: PSB3_TRYBB (Proteasome subunit beta type-3 OS=Trypanosoma brucei brucei GN=PSB3 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.855e-49
Identity = 95/200 (47.50%), Postives = 141/200 (70.50%), Query Frame = 2
Query:  110 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRRKLYQLREERDMKPETXASLVSALLYEKRFGPYFCQPVIAGLSDE-DKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 706
            Y+G + +AM GK CF + SD RLG QL+TI+ +  ++  I+D + +GL+GL TD QT  Q++ FR ++Y+LREERD+  +  A+LVS++LYE RFGP+F +PVI  +  +  + ++C  D IGA    +D+V AGT  ESL+G CEA+++P +EP+ELFE  +QA+LS+ DRD LSG+G    IVT  ++  R++KGR D
Sbjct:    6 YSGGSCLAMAGKECFVVISDNRLGEQLKTISMEVPKLHVINDGIVMGLTGLRTDQQTFAQKVNFRTEMYKLREERDINGKAFAALVSSMLYEARFGPWFVEPVIGTIDRKTGEVYLCATDLIGAPCEPEDYVCAGTCAESLHGMCEALWRPGLEPEELFEVAAQAMLSACDRDSLSGYGAVAAIVTKDKLVTRLIKGRKD 205          
BLAST of CK932736 vs. ExPASy Swiss-Prot
Match: PSB3_GIALA (Proteasome subunit beta type-3 OS=Giardia lamblia GN=PRSBETA3 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.424e-41
Identity = 78/186 (41.94%), Postives = 120/186 (64.52%), Query Frame = 2
Query:  107 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIAT-DFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRRKLYQLREERDMKPETXASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIV 661
            EYNGSAL+ + G +C A+A+D+RLG   QT+   + +RI ++     +GL+GL TD  T Y+++  +  LY L+E+R+++P   A ++S+ LY+ RFGPYF  P+IAG   + KP++  MD+IG  +   +F +AGTA + L G CE   KPDM  DE+   + Q + S+ +RD  SGWG HV ++
Sbjct:    6 EYNGSALIGIKGXDCVALAADKRLGCSYQTLTIGNEERIFRLSQSCLLGLAGLQTDVLTTYRQIRMKSNLYHLQEDREIRPRATAKMISSFLYKHRFGPYFISPIIAGFEADGKPYLGAMDTIGCLDDCTNFQIAGTASDFLLGLCETHVKPDMSEDEILPLMEQIIRSATNRDAYSGWGAHVVVL 191          
BLAST of CK932736 vs. ExPASy Swiss-Prot
Match: PSMB_ARCFU (Proteasome subunit beta OS=Archaeoglobus fulgidus GN=psmB PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.873e-17
Identity = 59/188 (31.38%), Postives = 94/188 (50.00%), Query Frame = 2
Query:  110 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRRKLYQLREERDMKPETXASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTE 673
            Y G+  V +V K+   +A+++R  +     +   ++I +I DR+ +  +G   D+Q L + +     LY++R ER       A+L S LL   R+ PY  Q +I G+  E K  I ++D IG     KD V  G+   + YG  E  F P++  DE  E   +A+ S++ RD  SG G  V  +T  E
Sbjct:    9 YKGTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKS-IYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDE 195          
BLAST of CK932736 vs. ExPASy Swiss-Prot
Match: PSMB_METJA (Proteasome subunit beta OS=Methanocaldococcus jannaschii GN=psmB PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.294e-17
Identity = 49/188 (26.06%), Postives = 95/188 (50.53%), Query Frame = 2
Query:  116 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRRKLYQLREERDMKPETXASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIK 679
            G+  V ++  +   +A+D+R  +       + +++ KI D + + ++G   D+Q + + L+   KLY++R  R++ P   A+L+S +L+  R  P+  Q +I G    +   + ++D +G     K F   G+     YG  EA +  DM  +E  +    AL S+++RD  SG G  + ++T   +K
Sbjct:    6 GTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGISLAVITKDGVK 193          
BLAST of CK932736 vs. ExPASy Swiss-Prot
Match: PSB1_HUMAN (Proteasome subunit beta type-1 OS=Homo sapiens GN=PSMB1 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.868e-16
Identity = 58/216 (26.85%), Postives = 97/216 (44.91%), Query Frame = 2
Query:  110 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRRKLYQLREERDMKPETXASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKP-----------------DMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 706
            +NG  ++A+ G++   +ASD RL         D  +  K+ D+  IG SG   D  TL + +  R K+Y+    + M     A+++S +LY +RF PY+   +I GL +E K  + + D +G+ +  +D   AG       G+  AM +P                  +  D     V    +S+ +RD  +G    + IVT   I+E  +  R D
Sbjct:   35 FNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQ--RDSFKAG-------GSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVSLRKD 241          
BLAST of CK932736 vs. ExPASy Swiss-Prot
Match: PSB1_MOUSE (Proteasome subunit beta type-1 OS=Mus musculus GN=Psmb1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.342e-15
Identity = 58/216 (26.85%), Postives = 98/216 (45.37%), Query Frame = 2
Query:  110 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRRKLYQLREERDMKPETXASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEP-----------------DELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 706
            +NG  ++A+ G++   +ASD RL         D  +  K+ D+  IG SG   D  TL + +  R K+Y+    + M     A+++S +LY +RF PY+   +I GL +E K  + + D +G+ +  +D   AG       G+  AM +P ++                  D     V    +S+ +RD  +G    + IVT   I+E  +  R D
Sbjct:   34 FNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQ--RDSFKAG-------GSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVPLRKD 240          
The following BLAST results are available for this feature:
BLAST of CK932736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
PSB3_BOVIN6.148e-6157.00Proteasome subunit beta type-3 OS=Bos taurus GN=PS... [more]
PSB3_DROME8.878e-6053.50Proteasome subunit beta type-3 OS=Drosophila melan... [more]
PSB3_CAEEL6.162e-5345.23Proteasome subunit beta type-3 OS=Caenorhabditis e... [more]
PSB3_YEAST3.058e-5250.25Proteasome component PUP3 OS=Saccharomyces cerevis... [more]
PSB3_TRYBB1.855e-4947.50Proteasome subunit beta type-3 OS=Trypanosoma bruc... [more]
PSB3_GIALA1.424e-4141.94Proteasome subunit beta type-3 OS=Giardia lamblia ... [more]
PSMB_ARCFU1.873e-1731.38Proteasome subunit beta OS=Archaeoglobus fulgidus ... [more]
PSMB_METJA9.294e-1726.06Proteasome subunit beta OS=Methanocaldococcus jann... [more]
PSB1_HUMAN7.868e-1626.85Proteasome subunit beta type-1 OS=Homo sapiens GN=... [more]
PSB1_MOUSE1.342e-1526.85Proteasome subunit beta type-1 OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004530_C12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932736 ID=CK932736; Name=CK932736; organism=Citrus sinensis; type=EST; length=771bp
GGGGATAAAAGAAGTTGGCAGTCTCAAAATTTTGTTAAATCGTTTTGTTC
CCAACTGAACTGAACTCGCATCAAGCCACTCTACAACTATAATTATGTCT
ATCACTGAGTACAATGGGAGCGCACTCGTTGCGATGGTCGGAAAGAACTG
CTTTGCCATTGCCAGCGATCGGCGCCTCGGCGTTCAGCTTCAGACAATAG
CCACTGATTTTCAGCGAATTTCCAAAATTCACGATCGCCTTTTTATCGGC
CTCTCTGGACTCGCCACTGATTCCCAGACCTTGTATCAAAGGCTGGTGTT
TCGTCGCAAATTGTATCAGCTGCGAGAGGAAAGGGACATGAAGCCTGAAA
CTTNNGCTAGCTTAGTCTCTGCTTTGCTTTATGAGAAAAGGTTTGGCCCT
TACTTCTGTCAACCTGTTATTGCTGGATTGAGTGATGAAGACAAGCCCTT
TATCTGCACAATGGACTCAATTGGAGCCAAGGAGCTTGCAAAAGATTTTG
TTGTTGCTGGAACTGCTGGAGAGTCTCTTTATGGTGCCTGTGAGGCAATG
TTCAAGCCTGATATGGAACCCGATGAGTTGTTTGAAACTGTATCTCAAGC
TTTGTTATCGTCTGTTGACCGTGACTGTTTGAGTGGTTGGGGAGGACATG
TCTACATTGTAACACCAACTGAAATAAAGGAAAGAATCTTGAAGGGAAGG
ATGGATTGATCTATAACTGCAGTGCTGAAAGCCACCCCTTCTCTTGTGTT
CGCTCTCCAGTATTTTTCAAT
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