CK932736

Overview
NameCK932736
Unique NameCK932736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932736 vs. ExPASy Swiss-Prot
Match: PSB1_RAT (Proteasome subunit beta type-1 OS=Rattus norvegicus GN=Psmb1 PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.753e-15
Identity = 58/216 (26.85%), Postives = 98/216 (45.37%), Query Frame = 2
Query:  110 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRRKLYQLREERDMKPETXASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEP-----------------DELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 706
            +NG  ++A+ G++   +ASD RL         D  +  K+ D+  IG SG   D  TL + +  R K+Y+    + M     A+++S +LY +RF PY+   +I GL +E K  + + D +G+ +  +D   AG       G+  AM +P ++                  D     V    +S+ +RD  +G    + IVT   I+E  +  R D
Sbjct:   34 FNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIEGLDEEGKGAVYSFDPVGSYQ--RDSFKAG-------GSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVPLRKD 240          
BLAST of CK932736 vs. ExPASy Swiss-Prot
Match: PSB1B_CARAU (Proteasome subunit beta type-1-B OS=Carassius auratus GN=psmb1-B PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.289e-15
Identity = 53/209 (25.36%), Postives = 101/209 (48.33%), Query Frame = 2
Query:  110 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRRKLYQLREERDMKPETXASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESL----------YGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 706
            +NG  ++A+ G++   +ASD RL       + D  +  K+ D   IG SG   D  TL + +  R K+Y+    + M     A+++S +LY +RF PY+   +I GL +E +  + + D +G+ +  +D   AG +  ++          +   E + +  +  ++  + V    +S+ +RD  +G    + I+T   I+E I+  R D
Sbjct:   31 FNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDPVGSYQ--RDTYKAGGSASAMLQPLLDNQIGFKNMENVEQVPLSQEKAVQLVKDVFISAAERDVYTGDALKICIITKEGIREEIVPLRKD 237          
BLAST of CK932736 vs. ExPASy Swiss-Prot
Match: PSB1A_CARAU (Proteasome subunit beta type-1-A OS=Carassius auratus GN=psmb1-A PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.289e-15
Identity = 53/209 (25.36%), Postives = 101/209 (48.33%), Query Frame = 2
Query:  110 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRRKLYQLREERDMKPETXASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESL----------YGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 706
            +NG  ++A+ G++   +ASD RL       + D  +  K+ D   IG SG   D  TL + +  R K+Y+    + M     A+++S +LY +RF PY+   +I GL +E +  + + D +G+ +  +D   AG +  ++          +   E + +  +  ++  + V    +S+ +RD  +G    + I+T   I+E I+  R D
Sbjct:   32 FNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDPVGSYQ--RDTYKAGGSASAMLQPLLDNQIGFKNMENVEQVPLSQEKAVQLVKDVFISAAERDVYTGDALKICIITKEGIREEIVPLRKD 238          
BLAST of CK932736 vs. ExPASy Swiss-Prot
Match: PSB1_BOVIN (Proteasome subunit beta type-1 OS=Bos taurus GN=PSMB1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.699e-15
Identity = 58/216 (26.85%), Postives = 96/216 (44.44%), Query Frame = 2
Query:  110 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRRKLYQLREERDMKPETXASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKP-----------------DMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 706
            +NG  ++A+ G++   +ASD RL         D  +  K+ D+  IG SG   D  TL + +  R K+Y+    + M     A+++S +LY +RF PY+   +I GL +E K  + + D +G+ +  +D   AG       G+  AM +P                  +  D     V    +S+ +RD  +G    V IVT   I+   +  R D
Sbjct:   35 FNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQ--RDSFKAG-------GSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALKVCIVTKEGIRGETVPLRKD 241          
BLAST of CK932736 vs. ExPASy Swiss-Prot
Match: PSB1_ORYSJ (Proteasome subunit beta type-1 OS=Oryza sativa subsp. japonica GN=PBF1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.136e-14
Identity = 55/213 (25.82%), Postives = 89/213 (41.78%), Query Frame = 2
Query:  107 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRRKLYQLREERDMKPETXASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFK-------------PDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 706
            E NG   VA+ G +   +A+D RL V    +  D  +I ++ D+  +  SG   D + L++ L  R  LYQ +  + M     A L+S  LY KRF PY+   V+ GL  E K  + T D++G+ E    +   GT    +    +   K               +   E  + V     S+ +RD  +G    + ++     K   +  R D
Sbjct:   10 ENNGGTCVAIAGADYCVVAADTRLSVGYNILTRDHSKICELADKCALASSGFQGDIKALHKNLAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVFTYDAVGSYE-RTGYSAQGTGSALIMPVLDNQLKSPSPLLLPARDAVTPLSETEAVDLVKDVFASATERDIYTGDKLEIVVINKAGTKREYIDLRKD 221          
BLAST of CK932736 vs. ExPASy Swiss-Prot
Match: PSB1_ARATH (Proteasome subunit beta type-1 OS=Arabidopsis thaliana GN=PBF1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.306e-14
Identity = 42/124 (33.87%), Postives = 65/124 (52.42%), Query Frame = 2
Query:  113 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRRKLYQLREERDMKPETXASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKE 484
            NG   VA+ G +   IA+D R+      ++ D+ +I K+ DR  +  SG   D + L + L  R  +YQ +  + M     A L+S  LY KRF PY+   V+ GL +E K  + T D++G+ E
Sbjct:   14 NGGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSSSGFQADVKALQKVLKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLDEEGKGCVFTYDAVGSYE 137          
BLAST of CK932736 vs. ExPASy Swiss-Prot
Match: PSB1_DROME (Proteasome subunit beta type-1 OS=Drosophila melanogaster GN=Pros26 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.641e-13
Identity = 55/211 (26.07%), Postives = 94/211 (44.55%), Query Frame = 2
Query:  107 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRRKLYQLREERDMKPETXASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMF-----------KPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 706
            E NG ++VA+ G +   IA+D RL       +    ++ K+  +  +G +G   D+ +L   +  R + Y+    R M  E  A ++S  +Y +RF PY+   ++AG+ +E K  + + D IG  E A  +   GTAG  L    +              K  +  +      S   +S+ +RD  +G    + I+T   I+ R L  R D
Sbjct:   26 ESNGGSIVAIAGDDFAVIAADTRLSSGYNIHSRTQSKLFKLSPQTVLGSAGCWADTLSLTGSIKVRMQSYEHTHLRTMTTEAVAQMLSIAMYNRRFFPYYVSNILAGIDNEGKGVVYSYDPIGHCEKA-TYRAGGTAGTLLQPVLDNQIGHKNMNLEDADKIKLTKERAVSVASDTFISAAERDIYTGDSVLINIITKDGIEVRTLTLRQD 235          
BLAST of CK932736 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.773e-13
Identity = 54/188 (28.72%), Postives = 94/188 (50.00%), Query Frame = 2
Query:  116 GSALVAMVGKNCFAIASDRR--LGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRRKLYQLREERDMKPETXASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTE 673
            G+  V +  K+    A++RR  +G  +   ATD  +I KI + +   ++G   D+Q+L + L     LY++R    +  E  A+L + +L+  RF P+  Q ++ G+ DE+   I ++D  G   +   FV  G+     YG  E  +  ++  DE  +   +A+ S+++RD  SG G  V  VT  E
Sbjct:    9 GTTTVGITCKDGVVFATERRASMGNLIAHKATD--KIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAANILHSSRFYPFIVQTLLGGV-DENGAKIYSLDPSGGM-IPDKFVSTGSGSPVAYGVLEDRYSDELYVDEAVDVAIRAIKSAMERDTYSGNGILVATVTEEE 192          
BLAST of CK932736 vs. ExPASy Swiss-Prot
Match: PSB1_SCHPO (Probable proteasome subunit beta type-1 OS=Schizosaccharomyces pombe GN=pam1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.234e-13
Identity = 47/125 (37.60%), Postives = 64/125 (51.20%), Query Frame = 2
Query:  113 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQ-RISKIHDRLFIGLSGLATDSQTLYQRLVFRRKLYQLREERDMKPETXASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKE 484
            NG   VA+ G     +A D R  V    I T FQ R+ ++ D L IG SG   D+  L +R+  R  LY    ER M  ++ A +V  LLY KRF PY+    +AG+  E K  I + D +G+ E
Sbjct:   12 NGGTTVAIAGDGFAILAGDTR-SVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVKRIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDKEGKGEIYSFDPVGSYE 135          
BLAST of CK932736 vs. ExPASy Swiss-Prot
Match: PSB1_PETHY (Proteasome subunit beta type-1 OS=Petunia hybrida GN=PBF1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.234e-13
Identity = 40/124 (32.26%), Postives = 62/124 (50.00%), Query Frame = 2
Query:  113 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRRKLYQLREERDMKPETXASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKE 484
            NG   VA+ G +   IA+D R+      +  D+ +I K+ D+  +  SG   D + L + L  R  +YQ +  + M       L+S  LY KRF PY+   V+ GL  E K  + T D++G+ E
Sbjct:   14 NGGTCVAVAGADYCVIAADTRMSTGYNILTRDYSKIIKLADKCVMASSGFQADVRALQKVLASRHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDSEGKGCVFTYDAVGSYE 137          
The following BLAST results are available for this feature:
BLAST of CK932736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
PSB1_RAT1.753e-1526.85Proteasome subunit beta type-1 OS=Rattus norvegicu... [more]
PSB1B_CARAU2.289e-1525.36Proteasome subunit beta type-1-B OS=Carassius aura... [more]
PSB1A_CARAU2.289e-1525.36Proteasome subunit beta type-1-A OS=Carassius aura... [more]
PSB1_BOVIN8.699e-1526.85Proteasome subunit beta type-1 OS=Bos taurus GN=PS... [more]
PSB1_ORYSJ1.136e-1425.82Proteasome subunit beta type-1 OS=Oryza sativa sub... [more]
PSB1_ARATH3.306e-1433.87Proteasome subunit beta type-1 OS=Arabidopsis thal... [more]
PSB1_DROME1.641e-1326.07Proteasome subunit beta type-1 OS=Drosophila melan... [more]
PSMB_METTH4.773e-1328.72Proteasome subunit beta OS=Methanobacterium thermo... [more]
PSB1_SCHPO6.234e-1337.60Probable proteasome subunit beta type-1 OS=Schizos... [more]
PSB1_PETHY6.234e-1332.26Proteasome subunit beta type-1 OS=Petunia hybrida ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004530_C12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932736 ID=CK932736; Name=CK932736; organism=Citrus sinensis; type=EST; length=771bp
GGGGATAAAAGAAGTTGGCAGTCTCAAAATTTTGTTAAATCGTTTTGTTC
CCAACTGAACTGAACTCGCATCAAGCCACTCTACAACTATAATTATGTCT
ATCACTGAGTACAATGGGAGCGCACTCGTTGCGATGGTCGGAAAGAACTG
CTTTGCCATTGCCAGCGATCGGCGCCTCGGCGTTCAGCTTCAGACAATAG
CCACTGATTTTCAGCGAATTTCCAAAATTCACGATCGCCTTTTTATCGGC
CTCTCTGGACTCGCCACTGATTCCCAGACCTTGTATCAAAGGCTGGTGTT
TCGTCGCAAATTGTATCAGCTGCGAGAGGAAAGGGACATGAAGCCTGAAA
CTTNNGCTAGCTTAGTCTCTGCTTTGCTTTATGAGAAAAGGTTTGGCCCT
TACTTCTGTCAACCTGTTATTGCTGGATTGAGTGATGAAGACAAGCCCTT
TATCTGCACAATGGACTCAATTGGAGCCAAGGAGCTTGCAAAAGATTTTG
TTGTTGCTGGAACTGCTGGAGAGTCTCTTTATGGTGCCTGTGAGGCAATG
TTCAAGCCTGATATGGAACCCGATGAGTTGTTTGAAACTGTATCTCAAGC
TTTGTTATCGTCTGTTGACCGTGACTGTTTGAGTGGTTGGGGAGGACATG
TCTACATTGTAACACCAACTGAAATAAAGGAAAGAATCTTGAAGGGAAGG
ATGGATTGATCTATAACTGCAGTGCTGAAAGCCACCCCTTCTCTTGTGTT
CGCTCTCCAGTATTTTTCAAT
back to top