CK932736

Overview
NameCK932736
Unique NameCK932736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932736 vs. ExPASy Swiss-Prot
Match: PSB9_MUSMB (Proteasome subunit beta type-9 OS=Mus musculus bactrianus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.389e-12
Identity = 48/198 (24.24%), Postives = 95/198 (47.98%), Query Frame = 2
Query:  110 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRRKLYQLREERDMKPETXASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTE--IKERILKG 697
            + G+ ++A+       + SD R+      +   F ++S +H R+F  LSG A D+Q +     ++ +L+ L  E        A++V  + Y+ R        ++AG    +   +    ++G   + + F ++G+    +YG  +A +KP M P+E     + A+  +++RD  S  GG +Y+VT T   +  R++ G
Sbjct:   18 HTGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQV--YGTMGGMLIRQPFTISGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSS--GGVIYLVTITAAGVDHRVILG 210          
BLAST of CK932736 vs. ExPASy Swiss-Prot
Match: PSB9_MUSSI (Proteasome subunit beta type-9 OS=Mus spicilegus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.814e-12
Identity = 48/198 (24.24%), Postives = 94/198 (47.47%), Query Frame = 2
Query:  110 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRRKLYQLREERDMKPETXASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTE--IKERILKG 697
            + G+ ++A+       + SD R+      +   F ++S +H R+F  LSG A D+Q +     ++ +L+ L  E        A++V  + Y+ R        ++AG    +   +    ++G   + + F + G+    +YG  +A +KP M P+E     + A+  +++RD  S  GG +Y+VT T   +  R++ G
Sbjct:   18 HTGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQV--YGTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSS--GGVIYLVTITAAGVDHRVILG 210          
BLAST of CK932736 vs. ExPASy Swiss-Prot
Match: PSB9_MUSDU (Proteasome subunit beta type-9 OS=Mus dunni GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.814e-12
Identity = 48/198 (24.24%), Postives = 94/198 (47.47%), Query Frame = 2
Query:  110 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRRKLYQLREERDMKPETXASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTE--IKERILKG 697
            + G+ ++A+       + SD R+      +   F ++S +H R+F  LSG A D+Q +     ++ +L+ L  E        A++V  + Y+ R        ++AG    +   +    ++G   + + F + G+    +YG  +A +KP M P+E     + A+  +++RD  S  GG +Y+VT T   +  R++ G
Sbjct:   18 HTGTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQV--YGTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSS--GGVIYLVTITAAGVDHRVILG 210          
BLAST of CK932736 vs. ExPASy Swiss-Prot
Match: PSB9_MOUSE (Proteasome subunit beta type-9 OS=Mus musculus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.814e-12
Identity = 48/198 (24.24%), Postives = 94/198 (47.47%), Query Frame = 2
Query:  110 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRRKLYQLREERDMKPETXASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTE--IKERILKG 697
            + G+ ++A+       + SD R+      +   F ++S +H R+F  LSG A D+Q +     ++ +L+ L  E        A++V  + Y+ R        ++AG    +   +    ++G   + + F + G+    +YG  +A +KP M P+E     + A+  +++RD  S  GG +Y+VT T   +  R++ G
Sbjct:   18 HTGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQV--YGTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSS--GGVIYLVTITAAGVDHRVILG 210          
BLAST of CK932736 vs. ExPASy Swiss-Prot
Match: PB6LB_SALSA (Proteasome subunit beta type-6-B like protein OS=Salmo salar GN=psmb6l-b PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.814e-12
Identity = 44/195 (22.56%), Postives = 96/195 (49.23%), Query Frame = 2
Query:  116 GSALVAMVGKNCFAIASDRRLGVQLQTIATD-FQRISKIHDRLFIGLSGLATDSQTLYQRLVFRRKLYQLREERDMKPETXASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKG 697
            G+ ++A+       I SD R  +    +++    ++ ++HDR+F  ++G   D+Q + +   F+   + ++ E     +  AS++  L Y  +        + AG   +  P + T+ ++G   L++ F + G+    +YG  +A +KPDM  +E  +  + AL  ++ RD +SG   H+ ++T   ++  ++ G
Sbjct:   16 GTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNK-EELQAGFITAGWDRKKGPQVYTV-ALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFATNALALAMGRDNVSGGVAHLVVITEEGVEHVVIPG 208          
BLAST of CK932736 vs. ExPASy Swiss-Prot
Match: PB6LA_SALSA (Proteasome subunit beta type-6-A like protein OS=Salmo salar GN=psmb6l-a PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.369e-12
Identity = 44/195 (22.56%), Postives = 95/195 (48.72%), Query Frame = 2
Query:  116 GSALVAMVGKNCFAIASDRRLGVQLQTIATD-FQRISKIHDRLFIGLSGLATDSQTLYQRLVFRRKLYQLREERDMKPETXASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKG 697
            G+ ++A+       I SD R  +    +++    ++ ++HDR+F  ++G   D+Q + +   F+   + ++ E     +  AS++  L Y  +        + AG   +  P + T+ ++G   L++ F + G+    +YG  +A +KPDM  +E  +    AL  ++ RD +SG   H+ ++T   ++  ++ G
Sbjct:   16 GTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNK-EELQAGFITAGWDRKKGPQVYTV-ALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFAKNALALAMGRDNVSGGVAHLVVITEEGVEHVVIPG 208          
BLAST of CK932736 vs. ExPASy Swiss-Prot
Match: PSB9_RAT (Proteasome subunit beta type-9 OS=Rattus norvegicus GN=Psmb9 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.893e-12
Identity = 47/198 (23.74%), Postives = 94/198 (47.47%), Query Frame = 2
Query:  110 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRRKLYQLREERDMKPETXASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTE--IKERILKG 697
            + G+ ++A+       + SD R+      +   F ++S +H R++  LSG A D+Q +     ++ +L+ L  E        A++V  + Y+ R        ++AG    +   +    ++G   + + F + G+    +YG  +A +KP M P+E     + A+  +++RD  S  GG +Y+VT T   +  R++ G
Sbjct:   18 HTGTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIYCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANIVKNISYKYR-EDLLAHLMVAGWDQHEGGQV--YGTMGGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMTPEECRRFTTDAITLAMNRDGSS--GGVIYLVTITADGVDHRVILG 210          
BLAST of CK932736 vs. ExPASy Swiss-Prot
Match: PSB9_MUSPL (Proteasome subunit beta type-9 OS=Mus platythrix GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 47/198 (23.74%), Postives = 93/198 (46.97%), Query Frame = 2
Query:  110 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRRKLYQLREERDMKPETXASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPT--EIKERILKG 697
            + G+ ++A+       + SD R+      +   F ++S +H R+F  LSG A D+Q +     ++ +L+ L  E        A++V  + Y+ R        ++AG    +   +    ++G   + + F + G+    +YG  +A +KP M  +E     + A+  +++RD  S  GG +Y+VT T   +  R++ G
Sbjct:   18 HTGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQV--YGTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTSEECRRFTTNAITLAMNRDGSS--GGVIYLVTITVAGVDHRVILG 210          
BLAST of CK932736 vs. ExPASy Swiss-Prot
Match: PSMB_PYRAB (Proteasome subunit beta OS=Pyrococcus abyssi GN=psmB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.468e-11
Identity = 51/189 (26.98%), Postives = 94/189 (49.74%), Query Frame = 2
Query:  107 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRRKLYQLREERDMKPETXASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTE 673
            ++ G+  V +V  +   +A+DRR  +     A +  +I KI + L I  +G   D   L + L    KLY  +  + M  +  A+L++ +L   R  PY    ++ G   ++KP + ++D +G     K +V AG+  E  Y   ++ ++ D++  E  +   +A+ S++ RD  SG G  + +VT TE
Sbjct:    7 KFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGF--DEKPRLYSVDMMGGITEDK-YVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDG--IMVVTITE 190          
The following BLAST results are available for this feature:
BLAST of CK932736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
PSB9_MUSMB1.389e-1224.24Proteasome subunit beta type-9 OS=Mus musculus bac... [more]
PSB9_MUSSI1.814e-1224.24Proteasome subunit beta type-9 OS=Mus spicilegus G... [more]
PSB9_MUSDU1.814e-1224.24Proteasome subunit beta type-9 OS=Mus dunni GN=Psm... [more]
PSB9_MOUSE1.814e-1224.24Proteasome subunit beta type-9 OS=Mus musculus GN=... [more]
PB6LB_SALSA1.814e-1222.56Proteasome subunit beta type-6-B like protein OS=S... [more]
PB6LA_SALSA2.369e-1222.56Proteasome subunit beta type-6-A like protein OS=S... [more]
PSB9_RAT6.893e-1223.74Proteasome subunit beta type-9 OS=Rattus norvegicu... [more]
PSB9_MUSPL3.421e-1123.74Proteasome subunit beta type-9 OS=Mus platythrix G... [more]
PSMB_PYRAB4.468e-1126.98Proteasome subunit beta OS=Pyrococcus abyssi GN=ps... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004530_C12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932736 ID=CK932736; Name=CK932736; organism=Citrus sinensis; type=EST; length=771bp
GGGGATAAAAGAAGTTGGCAGTCTCAAAATTTTGTTAAATCGTTTTGTTC
CCAACTGAACTGAACTCGCATCAAGCCACTCTACAACTATAATTATGTCT
ATCACTGAGTACAATGGGAGCGCACTCGTTGCGATGGTCGGAAAGAACTG
CTTTGCCATTGCCAGCGATCGGCGCCTCGGCGTTCAGCTTCAGACAATAG
CCACTGATTTTCAGCGAATTTCCAAAATTCACGATCGCCTTTTTATCGGC
CTCTCTGGACTCGCCACTGATTCCCAGACCTTGTATCAAAGGCTGGTGTT
TCGTCGCAAATTGTATCAGCTGCGAGAGGAAAGGGACATGAAGCCTGAAA
CTTNNGCTAGCTTAGTCTCTGCTTTGCTTTATGAGAAAAGGTTTGGCCCT
TACTTCTGTCAACCTGTTATTGCTGGATTGAGTGATGAAGACAAGCCCTT
TATCTGCACAATGGACTCAATTGGAGCCAAGGAGCTTGCAAAAGATTTTG
TTGTTGCTGGAACTGCTGGAGAGTCTCTTTATGGTGCCTGTGAGGCAATG
TTCAAGCCTGATATGGAACCCGATGAGTTGTTTGAAACTGTATCTCAAGC
TTTGTTATCGTCTGTTGACCGTGACTGTTTGAGTGGTTGGGGAGGACATG
TCTACATTGTAACACCAACTGAAATAAAGGAAAGAATCTTGAAGGGAAGG
ATGGATTGATCTATAACTGCAGTGCTGAAAGCCACCCCTTCTCTTGTGTT
CGCTCTCCAGTATTTTTCAAT
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