CK932859

Overview
NameCK932859
Unique NameCK932859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_ANAVT (Glycine dehydrogenase [decarboxylating] OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gcvP PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.575e-49
Identity = 88/140 (62.86%), Postives = 108/140 (77.14%), Query Frame = 2
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 430
            + DLR LK +A IE +D+AKRL+DYGFH PT+SWPV GT+++EPTESES+ ELDR+CDALI+IR+EIA IE GK D HNN+LK APH    L+   W  PYSRE AAYP SW R  KFWP+ GR+D  +GDRN +C+ LP
Sbjct:  830 ILDLRALKKSANIEIDDIAKRLIDYGFHAPTVSWPVTGTIMVEPTESESQAELDRFCDALIAIRQEIAAIEAGKMDTHNNLLKNAPHTIESLIVGEWLHPYSREQAAYPVSWTREYKFWPSVGRIDAAFGDRNFVCSCLP 969          
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_ANASP (Glycine dehydrogenase [decarboxylating] OS=Anabaena sp. (strain PCC 7120) GN=gcvP PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.065e-48
Identity = 86/140 (61.43%), Postives = 107/140 (76.43%), Query Frame = 2
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 430
            + DLR LK +A IE +D+AKRL+DYGFH PT+SWPV GT+++EPTESES+ ELDR+C+ALI+IR+EIA IE GK DI +N LK APH    L+   W  PYSRE AAYPA W R  KFWP+ GR+D  +GDRN +C+ LP
Sbjct:  839 ILDLRALKKSANIEIDDIAKRLIDYGFHAPTVSWPVAGTIMVEPTESESQAELDRFCEALIAIRQEIADIEAGKVDIQDNSLKNAPHTVESLIVGEWPHPYSREQAAYPAPWTREHKFWPSVGRIDAAFGDRNFVCSCLP 978          
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_LEPIN (Glycine dehydrogenase [decarboxylating] OS=Leptospira interrogans GN=gcvP PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.615e-48
Identity = 88/140 (62.86%), Postives = 108/140 (77.14%), Query Frame = 2
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 430
            + DLR  K +AGIE EDVAKRL+DYGFH PTMS+PVPGTL+IEPTESES EELDR+C+A++ I +EI  ++NG  D  +N LK +PH  +++  D W   Y RE AAYPASWL+  KFWP  GRVDNVYGDRNL+C+ LP
Sbjct:  820 ILDLRPFKKSAGIEVEDVAKRLIDYGFHAPTMSFPVPGTLMIEPTESESLEELDRFCEAMLLIYQEILDVQNGTLDKTDNPLKNSPHTAAMVTSDRWDHLYPRERAAYPASWLKDHKFWPYVGRVDNVYGDRNLVCSCLP 959          
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_BDEBA (Glycine dehydrogenase [decarboxylating] OS=Bdellovibrio bacteriovorus GN=gcvP PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.474e-47
Identity = 86/137 (62.77%), Postives = 105/137 (76.64%), Query Frame = 2
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICT 421
            + D+R +K T+GI+  DVAKRLMD+GFH PTMS+PV GTL+IEPTESESK+ELDR+ +++++IR+EIA +E GK D  NN LK APH   +LM   W  PYSRE A YP  WLR  KFWP  GRVDN YGDRNLIC+
Sbjct:  813 IVDVREIKKTSGIDVTDVAKRLMDFGFHAPTMSFPVAGTLMIEPTESESKKELDRFIESMVTIRKEIAAVETGKMDKENNALKNAPHTAQMLMKPEWNHPYSREEAVYPVEWLRGNKFWPVVGRVDNAYGDRNLICS 949          
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_LEPIC (Glycine dehydrogenase [decarboxylating] OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=gcvP PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.514e-47
Identity = 87/140 (62.14%), Postives = 108/140 (77.14%), Query Frame = 2
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 430
            + DLR  K +AGIE EDVAKRL+DYGFH PTMS+PVPGTL+IEPTESES EELDR+C+A++ I +EI  +++G  D  +N LK +PH  +++  D W   Y RE AAYPASWL+  KFWP  GRVDNVYGDRNL+C+ LP
Sbjct:  820 ILDLRPFKKSAGIEVEDVAKRLIDYGFHAPTMSFPVPGTLMIEPTESESLEELDRFCEAMLLIYQEILDVQSGTLDKTDNPLKNSPHTAAMVTSDRWDHLYPRERAAYPASWLKDHKFWPYVGRVDNVYGDRNLVCSCLP 959          
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_DICDI (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Dictyostelium discoideum GN=gcvP PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.552e-47
Identity = 88/140 (62.86%), Postives = 103/140 (73.57%), Query Frame = 2
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 430
            + DLR  K +AGIE EDVAKRL D  FHGPTMSWPVP TL+IEPTESESK ELDR CDALI IREEI +IE GKAD  NNVL  +PH   +++ D W  PYSR  AA+P      +KFWP  GR+DNV+GD+NL+C+  P
Sbjct:  850 IIDLRMFKESAGIEAEDVAKRLQDMNFHGPTMSWPVPNTLMIEPTESESKYELDRLCDALILIREEIREIETGKADRKNNVLVNSPHTEKVIVADNWNYPYSRSKAAFPTPATVASKFWPTVGRIDNVHGDKNLVCSCPP 989          
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP1_PSEPF (Glycine dehydrogenase [decarboxylating] 1 OS=Pseudomonas fluorescens (strain Pf0-1) GN=gcvP1 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.379e-45
Identity = 87/136 (63.97%), Postives = 107/136 (78.68%), Query Frame = 2
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLIC 418
            + DLR LK+++GI  +DVAKRL+D+GFH PTMS+PV GTL+IEPTESESKEELDR+CDA+I IREEI  +ENG  D  +N LK APH  + L+G+ WT PYSRE A YP + L   K+WP  GRVDNV+GDRNL+C
Sbjct:  807 ILDLRPLKDSSGISVDDVAKRLIDFGFHAPTMSFPVAGTLMIEPTESESKEELDRFCDAMIRIREEIRAVENGTLDKDDNPLKNAPHTAAELVGE-WTHPYSREQAVYPVASLIEGKYWPPVGRVDNVFGDRNLVC 941          
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_BORPD (Glycine dehydrogenase [decarboxylating] OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=gcvP PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.802e-45
Identity = 83/140 (59.29%), Postives = 106/140 (75.71%), Query Frame = 2
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 430
            + D+R LK+++GI  ED+AKRLMDYGFH PTMS+PV GTL++EPTESE   EL+R+ DA+I+IREEIAQ+E G+ D  +NVLK APH   +L+ + W   Y R+ AAYP + LR AK+WP   RVDN YGDRNL+C  LP
Sbjct:  813 ILDVRPLKDSSGISAEDIAKRLMDYGFHAPTMSFPVAGTLMVEPTESEGLAELERFIDAMIAIREEIAQVERGERDRDDNVLKNAPHTAQMLLAEEWLHDYPRQQAAYPVASLRDAKYWPPVARVDNAYGDRNLVCACLP 952          
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_PSEFS (Glycine dehydrogenase [decarboxylating] OS=Pseudomonas fluorescens (strain SBW25) GN=gcvP PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.353e-45
Identity = 86/136 (63.24%), Postives = 108/136 (79.41%), Query Frame = 2
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLIC 418
            + DLR LK+++GI  +DVAKRL+D+GFH PTMS+PV GTL+IEPTESESKEELDR+CDA+I+IREEI  +ENG  D  +N LK APH  + L+G+ W+ PYSRE A YP + L   K+WP  GRVDNV+GDRNL+C
Sbjct:  803 ILDLRPLKDSSGISVDDVAKRLIDFGFHAPTMSFPVAGTLMIEPTESESKEELDRFCDAMIAIREEIRAVENGTLDKDDNPLKNAPHTAAELVGE-WSHPYSREQAVYPVASLIEGKYWPPVGRVDNVFGDRNLVC 937          
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_PROMM (Glycine dehydrogenase [decarboxylating] OS=Prochlorococcus marinus (strain MIT 9313) GN=gcvP PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.073e-45
Identity = 81/137 (59.12%), Postives = 107/137 (78.10%), Query Frame = 2
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICT 421
            + DLR LK +AG+E +D+AKRLMDYGFH PT+SWPV GT+++EPTESES EEL+R+CDA+I+IREE A IE+G+ D  NN L+ APH  + +  + W +PYSR  AA+P +  R +KFWPA  R+DN YGDRNL+C+
Sbjct:  808 ILDLRPLKRSAGLEVDDIAKRLMDYGFHAPTVSWPVAGTVMVEPTESESLEELNRFCDAMIAIREETAAIESGQIDPQNNPLRRAPHTLAAVTAEVWDRPYSRAEAAFPLAEQRQSKFWPAVSRIDNAYGDRNLLCS 944          
The following BLAST results are available for this feature:
BLAST of CK932859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
GCSP_ANAVT1.575e-4962.86Glycine dehydrogenase [decarboxylating] OS=Anabaen... [more]
GCSP_ANASP5.065e-4861.43Glycine dehydrogenase [decarboxylating] OS=Anabaen... [more]
GCSP_LEPIN6.615e-4862.86Glycine dehydrogenase [decarboxylating] OS=Leptosp... [more]
GCSP_BDEBA1.474e-4762.77Glycine dehydrogenase [decarboxylating] OS=Bdellov... [more]
GCSP_LEPIC2.514e-4762.14Glycine dehydrogenase [decarboxylating] OS=Leptosp... [more]
GCSP_DICDI9.552e-4762.86Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP1_PSEPF1.379e-4563.97Glycine dehydrogenase [decarboxylating] 1 OS=Pseud... [more]
GCSP_BORPD1.802e-4559.29Glycine dehydrogenase [decarboxylating] OS=Bordete... [more]
GCSP_PSEFS2.353e-4563.24Glycine dehydrogenase [decarboxylating] OS=Pseudom... [more]
GCSP_PROMM3.073e-4559.12Glycine dehydrogenase [decarboxylating] OS=Prochlo... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004350_G03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IVF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932859 ID=CK932859; Name=CK932859; organism=Citrus sinensis; type=EST; length=701bp
GGGGAATTCATTGTGCGACTTAAGAGGCTTGAAGAATACTGCCGGGATAG
AGCCCGAAGATGTTGCCAAACGTCTTATGGATTATGGATTCCATGGACCA
ACAATGTCATGGCCTGTTCCAGGCACACTTATCATTGAACCAACTGAAAG
TGAAAGCAAGGAAGAGTTGGACAGGTATTGTGATGCTCTCATCTCCATCA
GAGAAGAAATTGCACAGATTGAAAATGGGAAGGCAGATATCCACAACAAT
GTCCTGAAGGGGGCGCCTCATCCACCATCTTTGCTCATGGGAGATACATG
GACTAAACCATACTCTCGAGAATATGCAGCCTATCCTGCTTCCTGGCTCC
GGTTTGCTAAGTTCTGGCCTGCTACAGGACGCGTTGACAATGTGTATGGT
GACCGCAACCTCATCTGCACCCTTCTTCCAGCTGCACAAGTTGCTGAGGA
GCAGGCTGCAGCCACTGCTTAGAGTTGCCATCAACATGCCCCCTGGTGCA
AGGTTTCTTCAGGAGCATGGAAAAATTTGGAATCATCAGCACTTCCTGAT
TTGATTGTATATATGAATACAGAGCCTCATGGCCCAATGCTTCCCTTTGA
TATACTGATTAATTATATCAGCTTCTTTAATAACAATAGTTGCTGATTGC
AACTCAGGTACTGCAAATTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
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