CK932859

Overview
NameCK932859
Unique NameCK932859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSPB_COXB2 (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Coxiella burnetii (strain CbuG_Q212) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 2 
Query:   20 LRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP--VPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPH 271
            L+ L    G+   D+AKRL+DYGFH PT+ +P  VP  L+IEPTE+ESK+ LD + +A+  I  EI            ++L+ APH
Sbjct:  382 LKPLTRAYGVTALDIAKRLLDYGFHAPTIYFPLLVPECLLIEPTETESKQTLDHFIEAMEKILTEIKTTP--------DLLRNAPH 459
[Close]
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSPB_COXB1 (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Coxiella burnetii (strain CbuK_Q154) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 2 
Query:   20 LRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP--VPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPH 271
            L+ L    G+   D+AKRL+DYGFH PT+ +P  VP  L+IEPTE+ESK+ LD + +A+  I  EI            ++L+ APH
Sbjct:  382 LKPLTRAYGVTALDIAKRLLDYGFHAPTIYFPLLVPECLLIEPTETESKQTLDHFIEAMEKILTEIKTTP--------DLLRNAPH 459
[Close]
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSPB_THENN (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 2 
Query:   44 GIEPEDVAKRLMDYGFHGPTMSWP--VPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPH 271
            G+   D+AKR++DYG H PT+ +P  VP  L+IEPTE+ESKE LDRY + L  + +E  +        + +VLK APH
Sbjct:  383 GVRTLDIAKRILDYGVHPPTVYFPLIVPEALMIEPTETESKETLDRYAEILEKVIKEAFE--------NPDVLKNAPH 452
The following BLAST results are available for this feature:
BLAST of CK932859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
GCSPB_COXB26.467e-1143.02Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_COXB16.467e-1143.02Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_THENN8.446e-1146.15Probable glycine dehydrogenase [decarboxylating] s... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004350_G03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IVF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932859 ID=CK932859; Name=CK932859; organism=Citrus sinensis; type=EST; length=701bp
GGGGAATTCATTGTGCGACTTAAGAGGCTTGAAGAATACTGCCGGGATAG
AGCCCGAAGATGTTGCCAAACGTCTTATGGATTATGGATTCCATGGACCA
ACAATGTCATGGCCTGTTCCAGGCACACTTATCATTGAACCAACTGAAAG
TGAAAGCAAGGAAGAGTTGGACAGGTATTGTGATGCTCTCATCTCCATCA
GAGAAGAAATTGCACAGATTGAAAATGGGAAGGCAGATATCCACAACAAT
GTCCTGAAGGGGGCGCCTCATCCACCATCTTTGCTCATGGGAGATACATG
GACTAAACCATACTCTCGAGAATATGCAGCCTATCCTGCTTCCTGGCTCC
GGTTTGCTAAGTTCTGGCCTGCTACAGGACGCGTTGACAATGTGTATGGT
GACCGCAACCTCATCTGCACCCTTCTTCCAGCTGCACAAGTTGCTGAGGA
GCAGGCTGCAGCCACTGCTTAGAGTTGCCATCAACATGCCCCCTGGTGCA
AGGTTTCTTCAGGAGCATGGAAAAATTTGGAATCATCAGCACTTCCTGAT
TTGATTGTATATATGAATACAGAGCCTCATGGCCCAATGCTTCCCTTTGA
TATACTGATTAATTATATCAGCTTCTTTAATAACAATAGTTGCTGATTGC
AACTCAGGTACTGCAAATTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
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