CK932859

Overview
NameCK932859
Unique NameCK932859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_PSEU2 (Glycine dehydrogenase [decarboxylating] OS=Pseudomonas syringae pv. syringae (strain B728a) GN=gcvP PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.569e-44
Identity = 83/136 (61.03%), Postives = 105/136 (77.21%), Query Frame = 2 
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLIC 418
            + DLR +K+++GI  +DVAKRL+D+GFH PTMS+PV GTL+IEPTESES+EELDR+CDA+I IREEI  +ENG  D  +N LK APH  + ++G  W+ PYSRE A YP   L   K+WP  GRVDNV+GDRNL+C
Sbjct:  809 ILDLRPIKDSSGISVDDVAKRLIDFGFHAPTMSFPVAGTLMIEPTESESREELDRFCDAMIKIREEIRAVENGTLDKDDNPLKNAPHTAAEIVGQ-WSHPYSREQAVYPVDSLIENKYWPPVGRVDNVFGDRNLVC 943
[Close]
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_PSE14 (Glycine dehydrogenase [decarboxylating] OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=gcvP PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.569e-44
Identity = 83/136 (61.03%), Postives = 105/136 (77.21%), Query Frame = 2 
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLIC 418
            + DLR +K+++GI  +DVAKRL+D+GFH PTMS+PV GTL+IEPTESES+EELDR+CDA+I IREEI  +ENG  D  +N LK APH  + ++G  W+ PYSRE A YP   L   K+WP  GRVDNV+GDRNL+C
Sbjct:  809 ILDLRPIKDSSGISVDDVAKRLIDFGFHAPTMSFPVAGTLMIEPTESESREELDRFCDAMIKIREEIRAVENGTLDKDDNPLKNAPHTAAEIVGQ-WSHPYSREQAVYPVDSLIENKYWPPVGRVDNVFGDRNLVC 943
[Close]
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_BURS3 (Glycine dehydrogenase [decarboxylating] OS=Burkholderia sp. (strain 383) GN=gcvP PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.569e-44
Identity = 81/140 (57.86%), Postives = 106/140 (75.71%), Query Frame = 2 
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 430
            + DLR +K ++GI  +DVAKRLMDYGFH PTMS+PVPGTL++EPTESES+EELDR+  A+I+IR+EI  +E G+AD  +N L+ APH  +++  + W   YSRE AAYP + L   K+WP  GR DNVYGDRNL C+ +P
Sbjct:  831 ILDLRPIKESSGISVDDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESQEELDRFIAAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVVTANEWLHAYSREQAAYPVASLGTNKYWPPVGRADNVYGDRNLFCSCVP 970
[Close]
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_BURCC (Glycine dehydrogenase [decarboxylating] OS=Burkholderia cenocepacia (strain MC0-3) GN=gcvP PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.885e-44
Identity = 81/140 (57.86%), Postives = 105/140 (75.00%), Query Frame = 2 
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 430
            + DLR +K ++GI  +DVAKRLMDYGFH PTMS+PVPGTL++EPTESES+EELDR+  A+I+IREEI  +E G+AD  +N L+ APH  +++  + W   YSRE AAYP + L   K+WP  GR DN YGDRNL C+ +P
Sbjct:  831 ILDLRPIKESSGISVDDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESQEELDRFIAAMIAIREEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAYSREQAAYPVASLGTNKYWPPVGRADNAYGDRNLFCSCVP 970
[Close]
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_BORPA (Glycine dehydrogenase [decarboxylating] OS=Bordetella parapertussis GN=gcvP PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.885e-44
Identity = 81/140 (57.86%), Postives = 104/140 (74.29%), Query Frame = 2 
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 430
            + D+R LK T+GI  ED+AKRLMDYGFH PTMS+PV GTL++EPTESE   EL+R+ +A+I+IR EIAQIE+G+ D  +NVL+ APH   +L+ + W   Y R+ AAYP + LR  K+WP   RVDN YGDRNL+C  LP
Sbjct:  810 ILDVRPLKETSGISAEDIAKRLMDYGFHAPTMSFPVAGTLMVEPTESEGLAELERFIEAMIAIRAEIAQIESGERDRDDNVLRNAPHTAQMLLAEEWHHDYPRQQAAYPVASLRENKYWPPVARVDNAYGDRNLVCACLP 949
[Close]
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_BORBR (Glycine dehydrogenase [decarboxylating] OS=Bordetella bronchiseptica GN=gcvP PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.885e-44
Identity = 81/140 (57.86%), Postives = 104/140 (74.29%), Query Frame = 2 
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 430
            + D+R LK T+GI  ED+AKRLMDYGFH PTMS+PV GTL++EPTESE   EL+R+ +A+I+IR EIAQIE+G+ D  +NVL+ APH   +L+ + W   Y R+ AAYP + LR  K+WP   RVDN YGDRNL+C  LP
Sbjct:  810 ILDVRPLKETSGISAEDIAKRLMDYGFHAPTMSFPVAGTLMVEPTESEGLAELERFIEAMIAIRAEIAQIESGERDRDDNVLRNAPHTAQMLLAEEWHHDYPRQQAAYPVASLRENKYWPPVARVDNAYGDRNLVCACLP 949
[Close]
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_AKKM8 (Glycine dehydrogenase [decarboxylating] OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=gcvP PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.885e-44
Identity = 83/137 (60.58%), Postives = 100/137 (72.99%), Query Frame = 2 
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICT 421
            + D R L + AG+  +D+AKRLMDYGFHGPTMS+PVPGTL++EPTESE K+ELDR+ +A+  I  EI  I NG AD  +NVLK +PH   ++  D W  PYSR  AAYP S L   KFWP  GRVDNVYGDRNL+CT
Sbjct:  799 ILDPRQLTHDAGLTVDDIAKRLMDYGFHGPTMSFPVPGTLMVEPTESEPKKELDRFIEAMERIHAEITAIINGTADKEDNVLKNSPHTAEMVSADEWRHPYSRSEAAYPVSGLLIHKFWPYVGRVDNVYGDRNLVCT 935
[Close]
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_VIBF1 (Glycine dehydrogenase [decarboxylating] OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=gcvP PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.291e-43
Identity = 80/137 (58.39%), Postives = 103/137 (75.18%), Query Frame = 2 
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICT 421
            + D+R LK T GI  ED+AKRLMD+GFH PTMS+PV GTL++EPTESE   ELDR+CDA+I+IREE+ ++E G+  + NN L  APH    LM D+W  PY+RE A +P+S  + +K+WP   RVDNVYGDRNLIC+
Sbjct:  810 IIDIRPLKETTGISEEDIAKRLMDFGFHAPTMSFPVAGTLMVEPTESEDLAELDRFCDAMIAIREEMNKVEQGEWPLDNNPLVNAPHTQVDLMSDSWEHPYTREVACFPSSQSKDSKYWPTVNRVDNVYGDRNLICS 946
[Close]
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_BORPE (Glycine dehydrogenase [decarboxylating] OS=Bordetella pertussis GN=gcvP PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.291e-43
Identity = 80/140 (57.14%), Postives = 104/140 (74.29%), Query Frame = 2 
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 430
            + D+R LK T+GI  ED+AKRLMDYGFH PTMS+PV GTL++EPTESE   EL+R+ +A+I+IR EIAQ+E+G+ D  +NVL+ APH   +L+ + W   Y R+ AAYP + LR  K+WP   RVDN YGDRNL+C  LP
Sbjct:  810 ILDVRPLKETSGISAEDIAKRLMDYGFHAPTMSFPVAGTLMVEPTESEGLAELERFIEAMIAIRAEIAQVESGERDRDDNVLRNAPHTAQMLLAEEWHHDYPRQQAAYPVASLRENKYWPPVARVDNAYGDRNLVCACLP 949
[Close]
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_VIBVY (Glycine dehydrogenase [decarboxylating] OS=Vibrio vulnificus (strain YJ016) GN=gcvP PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.202e-43
Identity = 78/137 (56.93%), Postives = 103/137 (75.18%), Query Frame = 2 
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICT 421
            + D+R LK   GI  ED+AKRLMDYGFH PTMS+PV GTL++EPTESE  EELDR+CDA+I+IREE+ +++NG+  + NN L  APH    LM + W +PY RE A +P++  + +K+WP   RVDNVYGDRNL+C+
Sbjct:  809 IIDIRPLKEETGISEEDIAKRLMDYGFHAPTMSFPVAGTLMVEPTESEDLEELDRFCDAMIAIREEMTKVKNGEWPLENNPLVNAPHTQVDLMEEQWDRPYPREIACFPSAATKRSKYWPTVNRVDNVYGDRNLVCS 945
The following BLAST results are available for this feature:
BLAST of CK932859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
GCSP_PSEU27.569e-4461.03Glycine dehydrogenase [decarboxylating] OS=Pseudom... [more]
GCSP_PSE147.569e-4461.03Glycine dehydrogenase [decarboxylating] OS=Pseudom... [more]
GCSP_BURS37.569e-4457.86Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURCC9.885e-4457.86Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BORPA9.885e-4457.86Glycine dehydrogenase [decarboxylating] OS=Bordete... [more]
GCSP_BORBR9.885e-4457.86Glycine dehydrogenase [decarboxylating] OS=Bordete... [more]
GCSP_AKKM89.885e-4460.58Glycine dehydrogenase [decarboxylating] OS=Akkerma... [more]
GCSP_VIBF11.291e-4358.39Glycine dehydrogenase [decarboxylating] OS=Vibrio ... [more]
GCSP_BORPE1.291e-4357.14Glycine dehydrogenase [decarboxylating] OS=Bordete... [more]
GCSP_VIBVY2.202e-4356.93Glycine dehydrogenase [decarboxylating] OS=Vibrio ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004350_G03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IVF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932859 ID=CK932859; Name=CK932859; organism=Citrus sinensis; type=EST; length=701bp
GGGGAATTCATTGTGCGACTTAAGAGGCTTGAAGAATACTGCCGGGATAG
AGCCCGAAGATGTTGCCAAACGTCTTATGGATTATGGATTCCATGGACCA
ACAATGTCATGGCCTGTTCCAGGCACACTTATCATTGAACCAACTGAAAG
TGAAAGCAAGGAAGAGTTGGACAGGTATTGTGATGCTCTCATCTCCATCA
GAGAAGAAATTGCACAGATTGAAAATGGGAAGGCAGATATCCACAACAAT
GTCCTGAAGGGGGCGCCTCATCCACCATCTTTGCTCATGGGAGATACATG
GACTAAACCATACTCTCGAGAATATGCAGCCTATCCTGCTTCCTGGCTCC
GGTTTGCTAAGTTCTGGCCTGCTACAGGACGCGTTGACAATGTGTATGGT
GACCGCAACCTCATCTGCACCCTTCTTCCAGCTGCACAAGTTGCTGAGGA
GCAGGCTGCAGCCACTGCTTAGAGTTGCCATCAACATGCCCCCTGGTGCA
AGGTTTCTTCAGGAGCATGGAAAAATTTGGAATCATCAGCACTTCCTGAT
TTGATTGTATATATGAATACAGAGCCTCATGGCCCAATGCTTCCCTTTGA
TATACTGATTAATTATATCAGCTTCTTTAATAACAATAGTTGCTGATTGC
AACTCAGGTACTGCAAATTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
back to top