CK932859

Overview
NameCK932859
Unique NameCK932859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_RHIME (Glycine dehydrogenase [decarboxylating] OS=Rhizobium meliloti GN=gcvP PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.368e-43
Identity = 83/140 (59.29%), Postives = 101/140 (72.14%), Query Frame = 2 
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 430
            + D R L  +AG+  +DVAKRL+D GFH PTMSWPV GTL+IEPTESE+K ELDR+CDA+++IREE   IE+G+ D  NN LK APH    L+GD W +PYSRE A +P    R  K+W    RVDNVYGDRNL+CT  P
Sbjct:  807 IIDTRPLAESAGVTVDDVAKRLIDCGFHAPTMSWPVAGTLMIEPTESETKAELDRFCDAMLAIREEARAIEDGRMDKVNNPLKNAPHTVEDLVGD-WDRPYSREQACFPPGAFRVDKYWSPVNRVDNVYGDRNLVCTCPP 945
[Close]
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_HAHCH (Glycine dehydrogenase [decarboxylating] OS=Hahella chejuensis (strain KCTC 2396) GN=gcvP PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.368e-43
Identity = 80/140 (57.14%), Postives = 105/140 (75.00%), Query Frame = 2 
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 430
            + D+R  K++ G+  +D+AKRL+D+GFH PTMS+PVPGTL+IEPTESES  ELDR+CDA+I+IREEI  IENG+ D+ ++ L  APH  + L+GD W +PYSRE   YP   L+  K+W   GR+DNVYGDRNL+C   P
Sbjct:  816 IIDVRPFKDSCGVTVDDIAKRLIDFGFHAPTMSFPVPGTLMIEPTESESLAELDRFCDAMIAIREEIRAIENGEYDVDHSPLHHAPHTAADLVGD-WDRPYSRERGVYPLKALKADKYWSPVGRIDNVYGDRNLVCACPP 954
[Close]
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_DINSH (Glycine dehydrogenase [decarboxylating] OS=Dinoroseobacter shibae (strain DFL 12) GN=gcvP PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.368e-43
Identity = 84/140 (60.00%), Postives = 96/140 (68.57%), Query Frame = 2 
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 430
            + D R L   AG+  EDVAKRLMD GFH PTMSWPV GTL++EPTESE K ELDR+CDA+++IREE   I  G  D  NN LK APH    L+GD W +PYSRE A YP    R  K+WP   RVDN YGDRNL+CT  P
Sbjct:  807 ILDTRVLDKIAGVTVEDVAKRLMDCGFHAPTMSWPVAGTLMVEPTESEPKAELDRFCDAMLAIREEADAIAAGSLDAENNPLKRAPHTVEDLVGD-WDRPYSREQACYPPGAFRVDKYWPPVNRVDNAYGDRNLVCTCPP 945
[Close]
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_BURPS (Glycine dehydrogenase [decarboxylating] OS=Burkholderia pseudomallei GN=gcvP PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.368e-43
Identity = 79/140 (56.43%), Postives = 106/140 (75.71%), Query Frame = 2 
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 430
            + DLR +K+++GI  +DVAKRLMDYGFH PTMS+PVPGTL++EPTESES+EELDR+  A+I+IR+EI  +E G+AD  +N L+ APH  +++  + W   YSRE AA+P + L   K+WP  GR DN YGDRNL C+ +P
Sbjct:  831 ILDLRPIKDSSGITVDDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESQEELDRFIAAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAYSREQAAFPVASLVANKYWPPVGRADNAYGDRNLFCSCVP 970
[Close]
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_BURP6 (Glycine dehydrogenase [decarboxylating] OS=Burkholderia pseudomallei (strain 668) GN=gcvP PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.368e-43
Identity = 79/140 (56.43%), Postives = 106/140 (75.71%), Query Frame = 2 
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 430
            + DLR +K+++GI  +DVAKRLMDYGFH PTMS+PVPGTL++EPTESES+EELDR+  A+I+IR+EI  +E G+AD  +N L+ APH  +++  + W   YSRE AA+P + L   K+WP  GR DN YGDRNL C+ +P
Sbjct:  831 ILDLRPIKDSSGITVDDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESQEELDRFIAAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAYSREQAAFPVASLVANKYWPPVGRADNAYGDRNLFCSCVP 970
[Close]
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_BURP1 (Glycine dehydrogenase [decarboxylating] OS=Burkholderia pseudomallei (strain 1710b) GN=gcvP PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.368e-43
Identity = 79/140 (56.43%), Postives = 106/140 (75.71%), Query Frame = 2 
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 430
            + DLR +K+++GI  +DVAKRLMDYGFH PTMS+PVPGTL++EPTESES+EELDR+  A+I+IR+EI  +E G+AD  +N L+ APH  +++  + W   YSRE AA+P + L   K+WP  GR DN YGDRNL C+ +P
Sbjct:  831 ILDLRPIKDSSGITVDDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESQEELDRFIAAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAYSREQAAFPVASLVANKYWPPVGRADNAYGDRNLFCSCVP 970
[Close]
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_BURP0 (Glycine dehydrogenase [decarboxylating] OS=Burkholderia pseudomallei (strain 1106a) GN=gcvP PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.368e-43
Identity = 79/140 (56.43%), Postives = 106/140 (75.71%), Query Frame = 2 
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 430
            + DLR +K+++GI  +DVAKRLMDYGFH PTMS+PVPGTL++EPTESES+EELDR+  A+I+IR+EI  +E G+AD  +N L+ APH  +++  + W   YSRE AA+P + L   K+WP  GR DN YGDRNL C+ +P
Sbjct:  826 ILDLRPIKDSSGITVDDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESQEELDRFIAAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAYSREQAAFPVASLVANKYWPPVGRADNAYGDRNLFCSCVP 965
[Close]
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_BURMS (Glycine dehydrogenase [decarboxylating] OS=Burkholderia mallei (strain SAVP1) GN=gcvP PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.368e-43
Identity = 79/140 (56.43%), Postives = 106/140 (75.71%), Query Frame = 2 
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 430
            + DLR +K+++GI  +DVAKRLMDYGFH PTMS+PVPGTL++EPTESES+EELDR+  A+I+IR+EI  +E G+AD  +N L+ APH  +++  + W   YSRE AA+P + L   K+WP  GR DN YGDRNL C+ +P
Sbjct:  831 ILDLRPIKDSSGITVDDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESQEELDRFIAAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAYSREQAAFPVASLVANKYWPPVGRADNAYGDRNLFCSCVP 970
[Close]
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_BURMA (Glycine dehydrogenase [decarboxylating] OS=Burkholderia mallei GN=gcvP PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.368e-43
Identity = 79/140 (56.43%), Postives = 106/140 (75.71%), Query Frame = 2 
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 430
            + DLR +K+++GI  +DVAKRLMDYGFH PTMS+PVPGTL++EPTESES+EELDR+  A+I+IR+EI  +E G+AD  +N L+ APH  +++  + W   YSRE AA+P + L   K+WP  GR DN YGDRNL C+ +P
Sbjct:  831 ILDLRPIKDSSGITVDDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESQEELDRFIAAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAYSREQAAFPVASLVANKYWPPVGRADNAYGDRNLFCSCVP 970
[Close]
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_BURM9 (Glycine dehydrogenase [decarboxylating] OS=Burkholderia mallei (strain NCTC 10229) GN=gcvP PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.368e-43
Identity = 79/140 (56.43%), Postives = 106/140 (75.71%), Query Frame = 2 
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 430
            + DLR +K+++GI  +DVAKRLMDYGFH PTMS+PVPGTL++EPTESES+EELDR+  A+I+IR+EI  +E G+AD  +N L+ APH  +++  + W   YSRE AA+P + L   K+WP  GR DN YGDRNL C+ +P
Sbjct:  831 ILDLRPIKDSSGITVDDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESQEELDRFIAAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAYSREQAAFPVASLVANKYWPPVGRADNAYGDRNLFCSCVP 970
The following BLAST results are available for this feature:
BLAST of CK932859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
GCSP_RHIME8.368e-4359.29Glycine dehydrogenase [decarboxylating] OS=Rhizobi... [more]
GCSP_HAHCH8.368e-4357.14Glycine dehydrogenase [decarboxylating] OS=Hahella... [more]
GCSP_DINSH8.368e-4360.00Glycine dehydrogenase [decarboxylating] OS=Dinoros... [more]
GCSP_BURPS8.368e-4356.43Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURP68.368e-4356.43Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURP18.368e-4356.43Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURP08.368e-4356.43Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURMS8.368e-4356.43Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURMA8.368e-4356.43Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURM98.368e-4356.43Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004350_G03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IVF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932859 ID=CK932859; Name=CK932859; organism=Citrus sinensis; type=EST; length=701bp
GGGGAATTCATTGTGCGACTTAAGAGGCTTGAAGAATACTGCCGGGATAG
AGCCCGAAGATGTTGCCAAACGTCTTATGGATTATGGATTCCATGGACCA
ACAATGTCATGGCCTGTTCCAGGCACACTTATCATTGAACCAACTGAAAG
TGAAAGCAAGGAAGAGTTGGACAGGTATTGTGATGCTCTCATCTCCATCA
GAGAAGAAATTGCACAGATTGAAAATGGGAAGGCAGATATCCACAACAAT
GTCCTGAAGGGGGCGCCTCATCCACCATCTTTGCTCATGGGAGATACATG
GACTAAACCATACTCTCGAGAATATGCAGCCTATCCTGCTTCCTGGCTCC
GGTTTGCTAAGTTCTGGCCTGCTACAGGACGCGTTGACAATGTGTATGGT
GACCGCAACCTCATCTGCACCCTTCTTCCAGCTGCACAAGTTGCTGAGGA
GCAGGCTGCAGCCACTGCTTAGAGTTGCCATCAACATGCCCCCTGGTGCA
AGGTTTCTTCAGGAGCATGGAAAAATTTGGAATCATCAGCACTTCCTGAT
TTGATTGTATATATGAATACAGAGCCTCATGGCCCAATGCTTCCCTTTGA
TATACTGATTAATTATATCAGCTTCTTTAATAACAATAGTTGCTGATTGC
AACTCAGGTACTGCAAATTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
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