CK932859

Overview
NameCK932859
Unique NameCK932859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP2_PSEF5 (Glycine dehydrogenase [decarboxylating] 2 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=gcvP2 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.252e-42
Identity = 83/140 (59.29%), Postives = 100/140 (71.43%), Query Frame = 2
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 430
            + DLR LK   GI  EDVAKRLMDYGFH PTMS+PVPGTL++EPTESESK ELDR+ +A++SIR EIAQ++ G     +N LKGAPH  + + G  W + YS E A  P +  R  K+WPA  RVDNVYGDRNL C  +P
Sbjct:  811 ILDLRPLKAQTGISEEDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESKAELDRFIEAMLSIRAEIAQVQEGNWPAEDNPLKGAPHTLADITG-VWERSYSIEQAVLPTAHTRAHKYWPAVNRVDNVYGDRNLFCACVP 949          
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_RHIL3 (Glycine dehydrogenase [decarboxylating] OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=gcvP PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.208e-41
Identity = 81/140 (57.86%), Postives = 102/140 (72.86%), Query Frame = 2
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 430
            + D R L +++G+  +DVAKRL+D GFH PTMSWPV GTL+IEPTESE+K ELDR+C+A+++IREE   IE+G+ D  NN LK APH    L+G+ W +PYSRE A +P    R  K+W    RVDNVYGDRNLICT  P
Sbjct:  807 IIDTRPLVDSSGVTVDDVAKRLIDCGFHAPTMSWPVAGTLMIEPTESETKAELDRFCEAILAIREEARAIEDGRMDKVNNPLKNAPHTVEDLVGE-WDRPYSREQACFPPGAFRVDKYWSPVNRVDNVYGDRNLICTCPP 945          
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_RHIE6 (Glycine dehydrogenase [decarboxylating] OS=Rhizobium etli (strain CIAT 652) GN=gcvP PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.208e-41
Identity = 81/140 (57.86%), Postives = 102/140 (72.86%), Query Frame = 2
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 430
            + D R L +++G+  +DVAKRL+D GFH PTMSWPV GTL+IEPTESE+K ELDR+C+A+++IREE   IE+G+ D  NN LK APH    L+G+ W +PYSRE A +P    R  K+W    RVDNVYGDRNLICT  P
Sbjct:  807 IIDTRPLVDSSGVTVDDVAKRLIDCGFHAPTMSWPVSGTLMIEPTESETKAELDRFCEAMLAIREEARAIEDGRMDKINNPLKNAPHTVEDLVGE-WDRPYSREQACFPPGAFRVDKYWSPVNRVDNVYGDRNLICTCPP 945          
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_RHOPA (Glycine dehydrogenase [decarboxylating] OS=Rhodopseudomonas palustris GN=gcvP PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.578e-41
Identity = 79/140 (56.43%), Postives = 100/140 (71.43%), Query Frame = 2
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 430
            + D R LK + G+  +D+AKRL+DYGFH PTMS+PVPGTL+IEPTESESK E+DR+CDA+I+IR EIAQ+E G+  I  + L+ APH    +    WT+PY R    +PA   R  K+W   GRVDNVYGDRNLIC+  P
Sbjct:  836 IIDPRALKTSTGVTVDDIAKRLIDYGFHAPTMSFPVPGTLMIEPTESESKAEIDRFCDAMIAIRREIAQVEAGRYPIEQSPLRHAPHTAHDVTSAEWTRPYPRTEGCFPAPNSRTDKYWSPVGRVDNVYGDRNLICSCPP 975          
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_MOUSE (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Mus musculus GN=Gldc PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.578e-41
Identity = 79/141 (56.03%), Postives = 101/141 (71.63%), Query Frame = 2
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLR-FAKFWPATGRVDNVYGDRNLICTLLP 430
            + D R  K +A +E  DVAKRL DYGFH PTMSWPV GTL+IEPTESE K ELDR+CDA+ISIR+EIA IE G+ D   N LK +PH  + +    W +PYSRE AA+P  +++   KFWP   R+D++YGD++L+CT  P
Sbjct:  869 ILDTRPFKKSANVEAVDVAKRLQDYGFHAPTMSWPVAGTLMIEPTESEDKAELDRFCDAMISIRQEIADIEEGRIDPRVNPLKMSPHSLTCVTSSCWDRPYSREVAAFPLPFVKPENKFWPTIARIDDIYGDQHLVCTCPP 1009          
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_XANCP (Glycine dehydrogenase [decarboxylating] OS=Xanthomonas campestris pv. campestris GN=gcvP PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.061e-41
Identity = 77/140 (55.00%), Postives = 103/140 (73.57%), Query Frame = 2
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 430
            + D+R L+ T+GI  ED+AKRL+D+GFH PT+S+PV GTL++EPTESES+ ELDR+ DA+I IREEI  IE+G+ D  +N LK APH  + +    WT  Y RE AA+P   L+  K+WP  GRVDNVYGD+N++C  +P
Sbjct:  826 ILDVRPLEKTSGIGAEDIAKRLIDFGFHAPTLSFPVAGTLMVEPTESESQHELDRFIDAMIQIREEIRAIEDGRLDREDNPLKHAPHTATQVSASEWTHAYPRELAAFPLPSLKQQKYWPPVGRVDNVYGDKNVMCACIP 965          
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_XANC8 (Glycine dehydrogenase [decarboxylating] OS=Xanthomonas campestris pv. campestris (strain 8004) GN=gcvP PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.061e-41
Identity = 77/140 (55.00%), Postives = 103/140 (73.57%), Query Frame = 2
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 430
            + D+R L+ T+GI  ED+AKRL+D+GFH PT+S+PV GTL++EPTESES+ ELDR+ DA+I IREEI  IE+G+ D  +N LK APH  + +    WT  Y RE AA+P   L+  K+WP  GRVDNVYGD+N++C  +P
Sbjct:  826 ILDVRPLEKTSGIGAEDIAKRLIDFGFHAPTLSFPVAGTLMVEPTESESQHELDRFIDAMIQIREEIRAIEDGRLDREDNPLKHAPHTATQVSASEWTHAYPRELAAFPLPSLKQQKYWPPVGRVDNVYGDKNVMCACIP 965          
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_STRMK (Glycine dehydrogenase [decarboxylating] OS=Stenotrophomonas maltophilia (strain K279a) GN=gcvP PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.061e-41
Identity = 77/140 (55.00%), Postives = 103/140 (73.57%), Query Frame = 2
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 430
            + D+R L+ T+GI  EDVAKRL+D+GFH PT+S+PV GTL++EPTESES  ELDR+ DA+I IREEI  IE+G+ D  +N LK APH  + +    WT  Y RE AA+P + L+ +K+WP   RVDNVYGD+N++C  +P
Sbjct:  805 ILDVRPLEKTSGIGAEDVAKRLIDFGFHAPTLSFPVAGTLMVEPTESESLHELDRFIDAMIQIREEITAIEDGRLDREDNPLKNAPHTATAVTASEWTHAYPRELAAFPLASLKQSKYWPPVARVDNVYGDKNVMCACIP 944          
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP_HUMAN (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Homo sapiens GN=GLDC PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.061e-41
Identity = 79/141 (56.03%), Postives = 101/141 (71.63%), Query Frame = 2
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLR-FAKFWPATGRVDNVYGDRNLICTLLP 430
            + D R  K +A IE  DVAKRL DYGFH PTMSWPV GTL++EPTESE K ELDR+CDA+ISIR+EIA IE G+ D   N LK +PH  + +    W +PYSRE AA+P  +++   KFWP   R+D++YGD++L+CT  P
Sbjct:  864 ILDTRPFKKSANIEAVDVAKRLQDYGFHAPTMSWPVAGTLMVEPTESEDKAELDRFCDAMISIRQEIADIEEGRIDPRVNPLKMSPHSLTCVTSSHWDRPYSREVAAFPLPFVKPENKFWPTIARIDDIYGDQHLVCTCPP 1004          
BLAST of CK932859 vs. ExPASy Swiss-Prot
Match: GCSP2_PSEPK (Glycine dehydrogenase [decarboxylating] 2 OS=Pseudomonas putida (strain KT2440) GN=gcvP2 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.061e-41
Identity = 81/140 (57.86%), Postives = 102/140 (72.86%), Query Frame = 2
Query:   11 LCDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLIIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 430
            + DLR LK   GI  EDVAKRLMDYGFH PTMS+PVPGTL++EPTESESK ELDR+ +A+++IR EI +++ G     NN LK APH  + ++G  W +PYS E A  P++ +R  K+WPA  RVDNVYGDRNL C  +P
Sbjct:  814 ILDLRPLKALTGISEEDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESKAELDRFVEAMLAIRAEIDEVQQGNWPAENNPLKHAPHTLADVLG-VWDRPYSLEQAVAPSAHVRQHKYWPAVNRVDNVYGDRNLFCACVP 952          
The following BLAST results are available for this feature:
BLAST of CK932859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
GCSP2_PSEF59.252e-4259.29Glycine dehydrogenase [decarboxylating] 2 OS=Pseud... [more]
GCSP_RHIL31.208e-4157.86Glycine dehydrogenase [decarboxylating] OS=Rhizobi... [more]
GCSP_RHIE61.208e-4157.86Glycine dehydrogenase [decarboxylating] OS=Rhizobi... [more]
GCSP_RHOPA1.578e-4156.43Glycine dehydrogenase [decarboxylating] OS=Rhodops... [more]
GCSP_MOUSE1.578e-4156.03Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_XANCP2.061e-4155.00Glycine dehydrogenase [decarboxylating] OS=Xanthom... [more]
GCSP_XANC82.061e-4155.00Glycine dehydrogenase [decarboxylating] OS=Xanthom... [more]
GCSP_STRMK2.061e-4155.00Glycine dehydrogenase [decarboxylating] OS=Stenotr... [more]
GCSP_HUMAN2.061e-4156.03Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP2_PSEPK2.061e-4157.86Glycine dehydrogenase [decarboxylating] 2 OS=Pseud... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004350_G03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IVF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932859 ID=CK932859; Name=CK932859; organism=Citrus sinensis; type=EST; length=701bp
GGGGAATTCATTGTGCGACTTAAGAGGCTTGAAGAATACTGCCGGGATAG
AGCCCGAAGATGTTGCCAAACGTCTTATGGATTATGGATTCCATGGACCA
ACAATGTCATGGCCTGTTCCAGGCACACTTATCATTGAACCAACTGAAAG
TGAAAGCAAGGAAGAGTTGGACAGGTATTGTGATGCTCTCATCTCCATCA
GAGAAGAAATTGCACAGATTGAAAATGGGAAGGCAGATATCCACAACAAT
GTCCTGAAGGGGGCGCCTCATCCACCATCTTTGCTCATGGGAGATACATG
GACTAAACCATACTCTCGAGAATATGCAGCCTATCCTGCTTCCTGGCTCC
GGTTTGCTAAGTTCTGGCCTGCTACAGGACGCGTTGACAATGTGTATGGT
GACCGCAACCTCATCTGCACCCTTCTTCCAGCTGCACAAGTTGCTGAGGA
GCAGGCTGCAGCCACTGCTTAGAGTTGCCATCAACATGCCCCCTGGTGCA
AGGTTTCTTCAGGAGCATGGAAAAATTTGGAATCATCAGCACTTCCTGAT
TTGATTGTATATATGAATACAGAGCCTCATGGCCCAATGCTTCCCTTTGA
TATACTGATTAATTATATCAGCTTCTTTAATAACAATAGTTGCTGATTGC
AACTCAGGTACTGCAAATTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
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