CK932919

Overview
NameCK932919
Unique NameCK932919
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932919 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSI (Auxin response factor 17 OS=Oryza sativa subsp. indica GN=ARF17 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.823e-11
Identity = 49/129 (37.98%), Postives = 65/129 (50.39%), Query Frame = 1
Query:  232 NLLLWQAFAGPPPSLPKKGDLVVYFPQGHLEYSAPAS----VSKAPPTFDLKPEIICRVADVRYLVSKKTDKVYTKMTLLPL-PEMVGENFKGKELQDLVVDNKRDGEGSTANSTPPLFYKKLRASDQS 603
            N  LW A AGP  SLP  G  VVYFPQGH E  A ++     S+ P   +L P++IC++ +V      +TD+VY +MTL PL P+ + + +   EL            GS        F K L ASD S
Sbjct:   28 NSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEMESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQELKDPYLPAEL------------GSANKQPTNYFCKTLTASDTS 144          
BLAST of CK932919 vs. ExPASy Swiss-Prot
Match: ARFI_ORYSJ (Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.109e-11
Identity = 47/124 (37.90%), Postives = 63/124 (50.81%), Query Frame = 1
Query:  241 LWQAFAGPPPSLPKKGDLVVYFPQGH---LEYSAPASVSKAPPTFDLKPEIICRVADVRYLVSKKTDKVYTKMTLLPLPEMVGENFKGKELQDLVVDNKRDGEGSTANSTPPLFYKKLRASDQS 603
            LW A AGP  ++PK+G+ V YFPQGH   LE S    + +  P F+L  +I+C V +V       +D+VY ++ L P  +         ELQDL        E  TA+S    F K L ASD S
Sbjct:   25 LWHACAGPLVTVPKRGERVYYFPQGHMEQLEASTNQQLDQYLPMFNLPSKILCSVVNVELRAEADSDEVYAQIMLQPEADQSELTSLDPELQDL--------EKCTAHS----FCKTLTASDTS 136          
BLAST of CK932919 vs. ExPASy Swiss-Prot
Match: ARFH_ARATH (Auxin response factor 8 OS=Arabidopsis thaliana GN=ARF8 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.109e-11
Identity = 50/129 (38.76%), Postives = 61/129 (47.29%), Query Frame = 1
Query:  232 NLLLWQAFAGPPPSLPKKGDLVVYFPQGHLEYSAPASVSKA----PPTFDLKPEIICRVADVRYLVSKKTDKVYTKMTLLPL-PEMVGENFKGKELQDLVVDNKRDGEGSTANSTPPLFYKKLRASDQS 603
            N  LW A AGP  SLP  G  VVYFPQGH E  A  +  +     P    L P++IC++ +V      +TD+VY +MTL PL PE   E F   EL            G  +      F K L ASD S
Sbjct:   20 NSELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNKEVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPEEQKETFVPIEL------------GIPSKQPSNYFCKTLTASDTS 136          
BLAST of CK932919 vs. ExPASy Swiss-Prot
Match: ARFA_ARATH (Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.061e-11
Identity = 32/77 (41.56%), Postives = 51/77 (66.23%), Query Frame = 1
Query:  241 LWQAFAGPPPSLPKKGDLVVYFPQGH---LEYSAPASVSKAPPTFDLKPEIICRVADVRYLVSKKTDKVYTKMTLLP 462
            LW A AGP  +LP++G+ V YFP+GH   LE S    + +  P+F+L  +I+C+V +++     +TD+VY ++TLLP
Sbjct:   23 LWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKILCKVINIQRRAEPETDEVYAQITLLP 99          
BLAST of CK932919 vs. ExPASy Swiss-Prot
Match: ARFY_ORYSJ (Auxin response factor 25 OS=Oryza sativa subsp. japonica GN=ARF25 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.047e-11
Identity = 52/130 (40.00%), Postives = 64/130 (49.23%), Query Frame = 1
Query:  232 NLLLWQAFAGPPPSLPKKGDLVVYFPQGHLEYSAPASVSK-----APPTFDLKPEIICRVADVRYLVSKKTDKVYTKMTLLPL-PEMVGENFKGKELQDLVVDNKRDGEGSTANSTPPLFYKKLRASDQS 603
            N  LW A AGP  SLP     VVYFPQGH E  A AS +K      P   +L P++IC++ +V      +TD+VY +MTL PL PE   E F   EL            G+ +      F K L ASD S
Sbjct:   26 NSELWHACAGPLVSLPVVRSRVVYFPQGHSEQVA-ASTNKEVDAQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPEEQKEPFLPMEL------------GAASKQPTNYFCKTLTASDTS 142          
BLAST of CK932919 vs. ExPASy Swiss-Prot
Match: ARFR_ARATH (Auxin response factor 18 OS=Arabidopsis thaliana GN=ARF18 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.047e-11
Identity = 36/96 (37.50%), Postives = 51/96 (53.12%), Query Frame = 1
Query:  187 DDLIFTEISDKDDDYNLLLWQAFAGPPPSLPKKGDLVVYFPQGHLEYSAPASV----SKAPPTFDLKPEIICRVADVRYLVSKKTDKVYTKMTLLP 462
            DD   +      D     LW+  AGP   +P+  + V YFPQGH+E    ++     S+  P FDL P+I+CRV DV      +TD+VY ++TL P
Sbjct:    8 DDFGSSSSRSYQDQLYTELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGINSEEIPVFDLPPKILCRVLDVTLKAEHETDEVYAQITLQP 103          
The following BLAST results are available for this feature:
BLAST of CK932919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ARFQ_ORYSI1.823e-1137.98Auxin response factor 17 OS=Oryza sativa subsp. in... [more]
ARFI_ORYSJ3.109e-1137.90Auxin response factor 9 OS=Oryza sativa subsp. jap... [more]
ARFH_ARATH3.109e-1138.76Auxin response factor 8 OS=Arabidopsis thaliana GN... [more]
ARFA_ARATH4.061e-1141.56Auxin response factor 1 OS=Arabidopsis thaliana GN... [more]
ARFY_ORYSJ9.047e-1140.00Auxin response factor 25 OS=Oryza sativa subsp. ja... [more]
ARFR_ARATH9.047e-1137.50Auxin response factor 18 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004350_A05 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IVF_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932919 ID=CK932919; Name=CK932919; organism=Citrus sinensis; type=EST; length=630bp
GGGGATTATCATTTGCTGCAATGTGTCGACTCTGACTGGCTTGTTTCATA
TTTTCTGTAAGTTTGAAAGTTTCGTTGGTCTCGTAATTTAATGGAAACAA
TTGATGCACCGAGCGAAACAGAAACGGATGATCTCAATTCCACAGAAATC
TCTGACGAGGATGATTGTGAGGGCGAAATAGAAACGGATGATCTCATTTT
CACAGAAATCTCTGACAAGGATGATGACTATAATTTGTTGCTCTGGCAAG
CTTTTGCTGGCCCTCCACCCTCACTGCCAAAGAAAGGAGACCTGGTTGTG
TATTTCCCGCAAGGTCATTTGGAATACTCTGCCCCTGCCTCTGTCTCAAA
AGCCCCACCCACATTTGATCTCAAACCTGAAATTATATGCAGGGTTGCAG
ATGTTCGGTATCTGGTTTCTAAGAAGACTGACAAGGTCTATACCAAGATG
ACTTTACTTCCTTTACCTGAGATGGTAGGTGAAAATTTTAAGGGCAAAGA
GCTTCAAGACTTGGTTGTGGACAACAAGAGGGATGGTGAGGGATCAACAG
CTAATTCCACCCCTCCCTTGTTTTACAAAAAGCTCAGAGCTTCCGATCAA
TCAAAAAAAAAAAGAAAAAAAAAAAAAAAA
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