CK932937

Overview
NameCK932937
Unique NameCK932937
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length452
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932937 vs. ExPASy Swiss-Prot
Match: XTH25_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.630e-23
Identity = 57/123 (46.34%), Postives = 79/123 (64.23%), Query Frame = 1
Query:   91 MSLIFSLFVGLLMVVL-VSSAKFDDLYQTSWAFDH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFYFEFLGNTTGEPYLVQTNVYVNGVG 450
            +SL+F+L V    +   V +  FD  +  +W      V  +G+ L L+LD  SG+GF +K +YLFGK+ +Q+KLV G+SAGTVTA+Y+ S G   +E  FEFLGN TG+PY + TNVY  G G
Sbjct:    8 LSLLFTLTVSTTTLFSPVFAGTFDTEFDITWGDGRGKVLNNGELLTLSLDRASGSGFQTKKEYLFGKIDMQLKLVPGNSAGTVTAYYLKSKGDTWDEIDFEFLGNLTGDPYTMHTNVYTQGKG 130          
BLAST of CK932937 vs. ExPASy Swiss-Prot
Match: XTH22_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 22 OS=Arabidopsis thaliana GN=XTH22 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.630e-23
Identity = 57/122 (46.72%), Postives = 81/122 (66.39%), Query Frame = 1
Query:   91 MSLIFSLFVGLLMVVLVSSAKFDDLYQTSWAFDH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFYFEFLGNTTGEPYLVQTNVYVNGVG 450
            ++ +  LF+ L++   VS A F    + +W      ++ +G+ L L+LD  SG+GF SK++YLFGKVS+Q+KLV G+SAGTVT  Y+ S G   +E  FEFLGN++GEPY + TNVY  G G
Sbjct:    3 ITYLLPLFLSLIITSSVS-ANFQRDVEITWGDGRGQIKNNGELLTLSLDKSSGSGFQSKNEYLFGKVSMQMKLVPGNSAGTVTTLYLKSPGTTWDEIDFEFLGNSSGEPYTLHTNVYTQGKG 123          
BLAST of CK932937 vs. ExPASy Swiss-Prot
Match: XTH24_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 24 OS=Arabidopsis thaliana GN=XTH24 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 3.630e-23
Identity = 56/119 (47.06%), Postives = 75/119 (63.03%), Query Frame = 1
Query:  100 IFSLFVGLLMVVLVSSAKFDDLYQTSWAFDH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFYFEFLGNTTGEPYLVQTNVYVNGVG 450
            IF     L+    VS+A F+     +W      +  +G  L L+LD  SG+GF SK++YLFGK+ +QIKLV G+SAGTVT FY+ S+G   +E  FEFLGN +G+PY + TNVY  G G
Sbjct:    6 IFFFTTLLVAAFSVSAADFNTDVNVAWGNGRGKILNNGQLLTLSLDKSSGSGFQSKTEYLFGKIDMQIKLVPGNSAGTVTTFYLKSEGSTWDEIDFEFLGNMSGDPYTLHTNVYTQGKG 124          
BLAST of CK932937 vs. ExPASy Swiss-Prot
Match: XTH14_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 14 OS=Arabidopsis thaliana GN=XTH14 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.630e-23
Identity = 55/124 (44.35%), Postives = 75/124 (60.48%), Query Frame = 1
Query:   88 KMSLIFSLFVGL-LMVVLVSSAKFDDLYQTSWAFDHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFYFEFLGNTTGEPYLVQTNVYVNGVG 450
            K  L+ SL + +   VV  S+  F + +  +W         +G  L   LD  SG+GF SK +YLFGK+ +++KLV G+SAGTVTA+Y+SS G   +E  FEFLGN TG PY + TNV+  G G
Sbjct:    7 KQPLLLSLLLAIGFFVVAASAGNFYESFDITWGNGRANIFENGQLLTCTLDKVSGSGFQSKKEYLFGKIDMKLKLVAGNSAGTVTAYYLSSKGTAWDEIDFEFLGNRTGHPYTIHTNVFTGGKG 130          
BLAST of CK932937 vs. ExPASy Swiss-Prot
Match: XTH23_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS=Arabidopsis thaliana GN=XTH23 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.741e-23
Identity = 58/126 (46.03%), Postives = 78/126 (61.90%), Query Frame = 1
Query:   79 SMAKMSLIFSLFVGLLMVVLVSSAKFDDLYQTSWAFDHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFYFEFLGNTTGEPYLVQTNVYVNGVG 450
            +M   S I    +   M+  VS A F    + +W     Q   +GD L L+LD  SG+GF SK++YLFGK+ +QIKLV G+SAGTVTA+Y+ S G   +E  FEFLGN +G+PY + TNV+  G G
Sbjct:    2 AMISYSTIVVALLASFMICSVS-ANFQRDVEITWGDGRGQITNNGDLLTLSLDKASGSGFQSKNEYLFGKIDMQIKLVAGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTQGKG 126          
BLAST of CK932937 vs. ExPASy Swiss-Prot
Match: XTH8_ORYSJ (Xyloglucan endotransglycosylase/hydrolase protein 8 OS=Oryza sativa subsp. japonica GN=XTH8 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.380e-22
Identity = 58/126 (46.03%), Postives = 82/126 (65.08%), Query Frame = 1
Query:   91 MSLIFSLFVGLLMVVLVSSAKFDDLYQTSWAFDHVQY---DGDT--LKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSS-DGPNHNEFYFEFLGNTTGEPYLVQTNVYVNGVG 450
            +S+  ++ V  L     ++A F + +    A DHV+    DG T  + L LD  SG+GF SK  YLFG+ S+Q+KLVGG+SAGTVT+FY+SS +G  H+E   EF+GN +G PY++ TNV+ NG G
Sbjct:    7 LSVAAAVAVSWLAASSAAAAGFYEKFDVVGAGDHVRVVSDDGKTQQVALTLDRSSGSGFTSKDTYLFGEFSVQMKLVGGNSAGTVTSFYLSSGEGDGHDEIDIEFMGNLSGNPYVMNTNVWANGDG 132          
BLAST of CK932937 vs. ExPASy Swiss-Prot
Match: XTH26_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 26 OS=Arabidopsis thaliana GN=XTH26 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 6.847e-22
Identity = 49/101 (48.51%), Postives = 65/101 (64.36%), Query Frame = 1
Query:  148 AKFDDLYQTSWAFDHVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFYFEFLGNTTGEPYLVQTNVYVNGVG 450
            A F   +  +W  DH+  +G  L+L LD  +G+   SK  +LFG V + IKLV G+SAGTV A+Y+SS G  H+E  FEFLGN TG+PY + TN+Y  G G
Sbjct:   27 ADFSKNFIVTWGKDHMFMNGTNLRLVLDKSAGSAIKSKVAHLFGSVEMLIKLVPGNSAGTVAAYYLSSTGSTHDEIDFEFLGNATGQPYTIHTNLYAQGKG 127          
BLAST of CK932937 vs. ExPASy Swiss-Prot
Match: XTH20_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 20 OS=Arabidopsis thaliana GN=XTH20 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 9.886e-21
Identity = 45/82 (54.88%), Postives = 59/82 (71.95%), Query Frame = 1
Query:  205 GDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFYFEFLGNTTGEPYLVQTNVYVNGVG 450
            G+ L L+LD +SG+GF S  ++L+GKV +Q+KLV G+SAGTVT FY+ S G   +E  FEFLGN +G PY + TNVY  G G
Sbjct:   49 GNLLSLSLDKFSGSGFQSHQEFLYGKVEVQMKLVPGNSAGTVTTFYLKSPGTTWDEIDFEFLGNISGHPYTLHTNVYTKGTG 130          
BLAST of CK932937 vs. ExPASy Swiss-Prot
Match: XTH17_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 17 OS=Arabidopsis thaliana GN=XTH17 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.877e-20
Identity = 45/83 (54.22%), Postives = 57/83 (68.67%), Query Frame = 1
Query:  202 DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFYFEFLGNTTGEPYLVQTNVYVNGVG 450
            DG  L L+LD  SG+GF S  ++L+GK  +Q+KLV G+SAGTVT FY+ S G   +E  FEFLGN +G PY + TNVY  G G
Sbjct:   48 DGKLLSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKSPGTTWDEIDFEFLGNISGHPYTLHTNVYTKGTG 130          
BLAST of CK932937 vs. ExPASy Swiss-Prot
Match: XTH18_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 18 OS=Arabidopsis thaliana GN=XTH18 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.907e-20
Identity = 45/83 (54.22%), Postives = 57/83 (68.67%), Query Frame = 1
Query:  202 DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFYFEFLGNTTGEPYLVQTNVYVNGVG 450
            DG  L L+LD  SG+GF S  ++L+GK  +Q+KLV G+SAGTVT FY+ S G   +E  FEFLGN +G PY + TNVY  G G
Sbjct:   48 DGKLLSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKSPGTTWDEIDFEFLGNLSGHPYTLHTNVYTKGSG 130          
The following BLAST results are available for this feature:
BLAST of CK932937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
XTH25_ARATH1.630e-2346.34Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH22_ARATH1.630e-2346.72Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH24_ARATH3.630e-2347.06Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH14_ARATH3.630e-2344.35Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH23_ARATH4.741e-2346.03Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH8_ORYSJ1.380e-2246.03Xyloglucan endotransglycosylase/hydrolase protein ... [more]
XTH26_ARATH6.847e-2248.51Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH20_ARATH9.886e-2154.88Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH17_ARATH2.877e-2054.22Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH18_ARATH4.907e-2054.22Probable xyloglucan endotransglucosylase/hydrolase... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004349_G05 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932937 ID=CK932937; Name=CK932937; organism=Citrus sinensis; type=EST; length=452bp
CTTCAACTTCCCTCCACTTCACTGGGCTTGCTCTGCTCATTCGCTTACTT
CCTCTCCCCGTTCTTCTGTCTTCATTCTTCAATGGCTAAAATGTCTTTGA
TTTTCAGTCTGTTTGTGGGTCTTTTAATGGTGGTTTTGGTCAGCTCAGCT
AAGTTTGATGATCTTTATCAAACAAGCTGGGCTTTTGATCATGTTCAGTA
TGATGGGGACACTCTCAAGCTTAACCTCGATAATTATTCCGGAGCTGGGT
TTGCGTCAAAGAGCAAGTATTTGTTTGGGAAAGTCTCCATCCAAATTAAA
CTTGTAGGGGGTGACTCTGCTGGAACTGTCACTGCCTTCTATATGTCATC
AGACGGTCCAAATCACAACGAGTTCTATTTTGAGTTCCTGGGGAACACTA
CAGGAGAGCCATACTTAGTCCAAACCAATGTTTATGTGAATGGTGTGGGC
AA
back to top