CK932940

Overview
NameCK932940
Unique NameCK932940
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length415
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932940 vs. ExPASy Swiss-Prot
Match: ACCO1_BRAJU (1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea GN=ACO PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.011e-15
Identity = 41/113 (36.28%), Postives = 65/113 (57.52%), Query Frame = -3
Query:   42 REVIDEYCKELVRLSGRLMKALSINLGISEDRLQNAFGGDNIGAC-LRVNFYPKCPQPDLTLGLSSHSDPGGLTLLLPDHQVTGLQVRKGDNWITVKPAKHAFIVNIGXXXQV 377
            R  + ++ K L  L+  L+  L  NLG+ +  L+  F G        +V+ YP CP+P++  GL +H+D GG+ LL  D +VTGLQ+ K  +WI V P  H+ ++N+G   +V
Sbjct:  114 RTAMKDFGKRLENLAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFGTKVSNYPACPKPEMIKGLRAHTDAGGIILLFQDDKVTGLQLLKDGDWIDVPPLNHSIVINLGDQLEV 226          
BLAST of CK932940 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.725e-15
Identity = 43/106 (40.57%), Postives = 62/106 (58.49%), Query Frame = -3
Query:   57 EVIDEYCKELVRLSGRLMKALSINLGISEDRLQNAFGGDNIGACLRVNFYPKCPQPDLTLGLSSHSDPGGLTLLLPDHQVTGLQVRKGDNWITVKPAKHAFIVNIG 374
            EV   YC E+ RLS  +M+ L  +LG+     +  F G++  + +R+N+YP C +P  TLG   H DP  LT+L  D+ V GLQV     W +++P   AF+VNIG
Sbjct:  162 EVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGND--SIMRLNYYPPCQRPMETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRPRADAFVVNIG 264          
BLAST of CK932940 vs. ExPASy Swiss-Prot
Match: GAOX3_ARATH (Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.252e-15
Identity = 42/106 (39.62%), Postives = 64/106 (60.38%), Query Frame = -3
Query:   57 EVIDEYCKELVRLSGRLMKALSINLGISEDRLQNAFGGDNIGACLRVNFYPKCPQPDLTLGLSSHSDPGGLTLLLPDHQVTGLQVRKGDNWITVKPAKHAFIVNIG 374
            +V  EY + +  LS ++M+ L ++LG+     +  F  ++  +  R+N+YP+C QP+L LG   H DP  LT+L  D QV GLQV   + W ++ P  HAF+VNIG
Sbjct:  184 KVYQEYAEAMNTLSLKIMELLGMSLGVERRYFKEFF--EDSDSIFRLNYYPQCKQPELALGTGPHCDPTSLTILHQD-QVGGLQVFVDNKWQSIPPNPHAFVVNIG 286          
BLAST of CK932940 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.252e-15
Identity = 43/106 (40.57%), Postives = 62/106 (58.49%), Query Frame = -3
Query:   57 EVIDEYCKELVRLSGRLMKALSINLGISEDRLQNAFGGDNIGACLRVNFYPKCPQPDLTLGLSSHSDPGGLTLLLPDHQVTGLQVRKGDNWITVKPAKHAFIVNIG 374
            EV   YC E+ RLS  +M+ L  +LG+     +  F G++  + +R+N+YP C +P  TLG   H DP  LT+L  D+ V GLQV     W +++P   AF+VNIG
Sbjct:  162 EVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGND--SIMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRPRADAFVVNIG 264          
BLAST of CK932940 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.252e-15
Identity = 43/106 (40.57%), Postives = 62/106 (58.49%), Query Frame = -3
Query:   57 EVIDEYCKELVRLSGRLMKALSINLGISEDRLQNAFGGDNIGACLRVNFYPKCPQPDLTLGLSSHSDPGGLTLLLPDHQVTGLQVRKGDNWITVKPAKHAFIVNIG 374
            EV   YC E+ RLS  +M+ L  +LG+     +  F G++  + +R+N+YP C +P  TLG   H DP  LT+L  D+ V GLQV     W +++P   AF+VNIG
Sbjct:  162 EVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGND--SIMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRPRADAFVVNIG 264          
BLAST of CK932940 vs. ExPASy Swiss-Prot
Match: LDOX_VITVI (Leucoanthocyanidin dioxygenase OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.553e-15
Identity = 39/108 (36.11%), Postives = 66/108 (61.11%), Query Frame = -3
Query:   42 EYCKELVRLSGRLMKALSINLGISEDRLQNAFGG-DNIGACLRVNFYPKCPQPDLTLGLSSHSDPGGLTLLLPDHQVTGLQVRKGDNWITVKPAKHAFIVNIGXXXQV 362
            EY  +L  L+ +++  LS+ LG+ E RL+   GG + +    ++N+YPKCPQP+L LG+ +H+D   LT +L  + V GLQ+     W+T K   ++ I++IG   ++
Sbjct:  177 EYSVKLRSLATKILSVLSLGLGLEEGRLEKEVGGMEELLLQKKINYYPKCPQPELALGVEAHTDVSALTFIL-HNMVPGLQLFYEGKWVTAKCVPNSIIMHIGDTIEI 283          
BLAST of CK932940 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSJ (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.559e-15
Identity = 40/105 (38.10%), Postives = 59/105 (56.19%), Query Frame = -3
Query:   57 VIDEYCKELVRLSGRLMKALSINLGISEDRLQNAFGGDNIGACLRVNFYPKCPQPDLTLGLSSHSDPGGLTLLLPDHQVTGLQVRKGDNWITVKPAKHAFIVNIG 371
            V  +YC+E+  LS  +M+ L ++LG+     +  F   +  + +R N+YP CP+P+ TLG   H DP  LT+LL D  V GL+V     W  V P   A ++NIG
Sbjct:  188 VYQKYCEEMKELSLTIMELLELSLGVERGYYREFFADSS--SIMRCNYYPPCPEPERTLGTGPHCDPTALTILLQD-DVGGLEVLVDGEWRPVSPVPGAMVINIG 289          
BLAST of CK932940 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSI (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.559e-15
Identity = 40/105 (38.10%), Postives = 59/105 (56.19%), Query Frame = -3
Query:   57 VIDEYCKELVRLSGRLMKALSINLGISEDRLQNAFGGDNIGACLRVNFYPKCPQPDLTLGLSSHSDPGGLTLLLPDHQVTGLQVRKGDNWITVKPAKHAFIVNIG 371
            V  +YC+E+  LS  +M+ L ++LG+     +  F   +  + +R N+YP CP+P+ TLG   H DP  LT+LL D  V GL+V     W  V P   A ++NIG
Sbjct:  188 VYQKYCEEMKELSLTIMELLELSLGVERGYYREFFADSS--SIMRCNYYPPCPEPERTLGTGPHCDPTALTILLQD-DVGGLEVLVDGEWRPVSPVPGAMVINIG 289          
BLAST of CK932940 vs. ExPASy Swiss-Prot
Match: IDS3_HORVU (2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.118e-14
Identity = 42/113 (37.17%), Postives = 61/113 (53.98%), Query Frame = -3
Query:   42 IREVIDEYCKELVRLSGRLMKALSINLGISEDRLQNAFGGDNIGACLRVNFYPKCPQPDLTLGLSSHSDPGGLTLLLPDHQVTGLQVRKGDNWITVKPAKHAFIVNIGXXXQV 380
            +R+VI+++  +   +   L++ L   +GI  D  +    G N+   L +N YP CP PD  LG   H D   +TLLLP   V GL+V    +WI V PA +AF+VN G   +V
Sbjct:  145 LRDVIEKFTSQTRDVGKELLRLLCEGMGIQADYFEGDLSGGNV--ILNINHYPSCPNPDKALGQPPHCDRNLITLLLPG-AVNGLEVSYKGDWIKVDPAPNAFVVNFGQQLEV 254          
BLAST of CK932940 vs. ExPASy Swiss-Prot
Match: GAOX1_ORYSJ (Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica GN=20ox1 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.108e-13
Identity = 45/108 (41.67%), Postives = 59/108 (54.63%), Query Frame = -3
Query:   57 EVIDEYCKELVRLSGRLMKALSINLGISEDRLQ--NAFGGDNIGACLRVNFYPKCPQPDLTLGLSSHSDPGGLTLLLPDHQVTGLQVRKGDNWITVKPAKHAFIVNIG 374
            EV   YC E+ RLS  LM+ L  +LGI  DR      F   N  + +R+N+YP C +P  TLG   H DP  LT+L  DH V GL+V     W  ++P   A +VN+G
Sbjct:  169 EVYSRYCHEMSRLSLELMEVLGESLGIVGDRRHYFRRFFQRN-DSIMRLNYYPACQRPLDTLGTGPHCDPTSLTILHQDH-VGGLEVWAEGRWRAIRPRPGALVVNVG 274          
The following BLAST results are available for this feature:
BLAST of CK932940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
ACCO1_BRAJU1.011e-1536.281-aminocyclopropane-1-carboxylate oxidase OS=Brass... [more]
GAO1B_WHEAT1.725e-1540.57Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]
GAOX3_ARATH2.252e-1539.62Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana G... [more]
GAO1D_WHEAT2.252e-1540.57Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]
GAO1A_WHEAT2.252e-1540.57Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]
LDOX_VITVI6.553e-1536.11Leucoanthocyanidin dioxygenase OS=Vitis vinifera P... [more]
GAOX2_ORYSJ8.559e-1538.10Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. ja... [more]
GAOX2_ORYSI8.559e-1538.10Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. in... [more]
IDS3_HORVU1.118e-1437.172'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vu... [more]
GAOX1_ORYSJ2.108e-1341.67Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_G09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932940 ID=CK932940; Name=CK932940; organism=Citrus sinensis; type=EST; length=415bp
GGGGAAAAAAAAGACCATAAATTAGGAAGTAATAAATAACTCACCTGAAN
NNNNTCGCCAATGTTGACGATGAAAGCATGCTTGGCCGGCTTCACGGTGA
TCCAATTATCGCCTTTGCGGACTTGAAGACCGGTGACTTGATGGTCCGGC
AAGAGTAGGGTCAAGCCGCCGGGGTCCGAATGCGACGACAAGCCAAGTGT
TAAGTCGGGCTGCGGACACTTTGGATAAAAATTAACCCTCAAACAGGCTC
CAATATTATCACCACCAAATGCATTCTGTAATCGATCTTCGCTTATTCCA
AGATTAATCGATAAAGCCTTCATTAACCTCCCACTTAGTCGCACCAATTC
CTTGCAGTACTCATCAATCACCTCCCTAATTGAAACAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA
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