CK932940

Overview
NameCK932940
Unique NameCK932940
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length415
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932940 vs. ExPASy Swiss-Prot
Match: ACCH2_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.134e-13
Identity = 44/117 (37.61%), Postives = 66/117 (56.41%), Query Frame = -3
Query:   42 REVIDEYCKELVRLSGRLMKALSINLGISEDRLQNAFGGDNIGACLR-----VNFYPKCPQPDLTLGLSSHSDPGGLTLLLPDHQVTGLQVRKGDNWITVKPAKHAFIVNIGXXXQV 377
            R+V+ EY K+++ L   L + LS  LG++ + L++         CL+      +++P CP+PDLT G S HSD   LT+LLPD+ + GLQV +   W  V     A I+NIG   Q+
Sbjct:  178 RDVMMEYSKQVMILGEFLFELLSEALGLNPNHLKDM-------ECLKGLRMLCHYFPPCPEPDLTFGTSKHSDGSFLTVLLPDN-IEGLQVCREGYWFDVPHVPGALIINIGDLLQL 286          
BLAST of CK932940 vs. ExPASy Swiss-Prot
Match: G3OX1_ARATH (Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 8.011e-13
Identity = 38/110 (34.55%), Postives = 68/110 (61.82%), Query Frame = -3
Query:   57 EVIDEYCKELVRLSGRLMKALSINLGISEDRLQNAFGGDNIG---ACLRVNFYPKCPQPDLTLGLSSHSDPGGLTLLLPDHQVTGLQVRKGD-NWITVKPAKHAFIVNIG 374
            ++++EY + + +L+ +LM     +LG+SE+ ++ A    ++    A L++N YP CP+PD  +GL++H+D   LT+L   +   GLQV + D  W+TV P   + +VN+G
Sbjct:  165 DIVEEYEEHMKKLASKLMWLALNSLGVSEEDIEWASLSSDLNWAQAALQLNHYPVCPEPDRAMGLAAHTDSTLLTILY-QNNTAGLQVFRDDLGWVTVPPFPGSLVVNVG 273          
BLAST of CK932940 vs. ExPASy Swiss-Prot
Match: G3OX4_ARATH (Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-12
Identity = 42/113 (37.17%), Postives = 68/113 (60.18%), Query Frame = -3
Query:   57 VIDEYCKELVRLSGRLMKALSINLGISEDRLQNAF----GGDNIG-ACLRVNFYPKCPQPDLTLGLSSHSDPGGLTLLLPDHQ--VTGLQV-RKGDNWITVKPAKHAFIVNIG 371
            +I EY  E+ +L+ RL+  +  +LG++ + ++ A      G  +G   +R+N YP CP+P+  +GL++H+D   LT+L   HQ    GLQV R+   W+TV+PA    +VNIG
Sbjct:  159 IIQEYVDEMEKLASRLLYCILGSLGVTVEDIEWAHKLEKSGSKVGRGAIRLNHYPVCPEPERAMGLAAHTDSTILTIL---HQSNTGGLQVFREESGWVTVEPAPGVLVVNIG 268          
BLAST of CK932940 vs. ExPASy Swiss-Prot
Match: ACCH3_SOLLC (1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.785e-12
Identity = 39/111 (35.14%), Postives = 63/111 (56.76%), Query Frame = -3
Query:   42 EVIDEYCKELVRLSGRLMKALSINLGISEDRLQNAFGGDNIGACLRVNFYPKCPQPDLTLGLSSHSDPGGLTLLLPDHQVTGLQVRKGDNWITVKPAKHAFIVNIGXXXQV 374
            E + ++ K++ +L   L++ LS  LG+    L++    D        N+YP CPQP+LT+G   H+D G +T+LL D  + GLQV   ++W+ V P   + +VNIG   Q+
Sbjct:  174 ESLIDFSKDVKKLGFTLLELLSEGLGLDRSYLKDYM--DCFHLFCSCNYYPPCPQPELTMGTIQHTDIGFVTILLQD-DMGGLQVLHQNHWVDVPPTPGSLVVNIGDFLQL 281          
BLAST of CK932940 vs. ExPASy Swiss-Prot
Match: FLS_MATIN (Flavonol synthase/flavanone 3-hydroxylase (Fragment) OS=Matthiola incana PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.331e-12
Identity = 41/107 (38.32%), Postives = 62/107 (57.94%), Query Frame = -3
Query:   57 REVIDEYCKELVRLSGRLMKALSINLGISEDRLQNAFGGDNIGACLRVNFYPKCPQPDLTLGLSSHSDPGGLTLLLPDHQVTGLQVRKGDNWITVKPAKHAFIVNIG 377
            REV +EY + +  LS ++M+ LS  LG+  + ++   G   +   + +N YP  P  D   GL  H+D  GLTL++ + ++ GLQV K D+WI V+    A IVNIG
Sbjct:  113 REVNEEYARHVKTLSEKIMEWLSEGLGLGREAIKEVNGCWYV---MNINHYPPYPHSDSFNGLEPHTDINGLTLIITN-EIPGLQVFKDDHWIEVEYIPSAIIVNIG 215          
BLAST of CK932940 vs. ExPASy Swiss-Prot
Match: G3OX2_ARATH (Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.044e-12
Identity = 38/110 (34.55%), Postives = 65/110 (59.09%), Query Frame = -3
Query:   57 EVIDEYCKELVRLSGRLMKALSINLGISEDRLQNAFGGDNIG---ACLRVNFYPKCPQPDLTLGLSSHSDPGGLTLLLPDHQVTGLQVRKGD-NWITVKPAKHAFIVNIG 374
            E+I+EY + + +L+ +LM     +LG+ E  +Q A    +     A +++N YPKCP+PD  +GL++H+D   +T+L   +   GLQV + D  W+T  P   + +VN+G
Sbjct:  158 EIIEEYEEHMQKLAAKLMWFALGSLGVEEKDIQWAGPNSDFQGTQAVIQLNHYPKCPEPDRAMGLAAHTDSTLMTILY-QNNTAGLQVFRDDVGWVTAPPVPGSLVVNVG 266          
BLAST of CK932940 vs. ExPASy Swiss-Prot
Match: DV4H_CATRO (Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.511e-11
Identity = 40/112 (35.71%), Postives = 61/112 (54.46%), Query Frame = -3
Query:   42 REVIDEYCKELVRLSGRLMKALSINLGISEDRLQNAFGGDNIGACLRVNFYPKCPQPDLTLGLSSHSDPGGLTLLLPDHQVTGLQVRKGDNWITVKPAKHAFIVNIGXXXQV 377
            R+++ +Y   +  L   L + LS  LG+  + L+     +  G  L  ++YP CPQP+LT G S HSD G LT+L+ D Q+ GLQ+   + WI V     A ++NI    Q+
Sbjct:  205 RDILMKYSNYVRNLGLILFELLSEALGLKPNHLEEMDCAE--GLILLGHYYPACPQPELTFGTSKHSDSGFLTILMQD-QIGGLQILLENQWIDVPFIPGALVINIADLLQL 313          
BLAST of CK932940 vs. ExPASy Swiss-Prot
Match: G3O23_WHEAT (Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum GN=GA3ox2-3 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.396e-11
Identity = 39/116 (33.62%), Postives = 65/116 (56.03%), Query Frame = -3
Query:   42 VIDEYCKELVRLSGRLMKALSINLGISEDRLQNAFGGDNIG----ACLRVNFYPKCPQPDLTLGLSSHSDPGGLTLLLPDHQVTGLQV-RKG-DNWITVKPAKHAFIVNIGXXXQV 371
            V++E+ +E+  L+ +L++   + LG++ +++        I     A + +N+YPKCP P   LGL +H+D G  T +L    V GLQ+ R G D W+TV     A +VN+G   Q+
Sbjct:  162 VMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEQKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVL-QSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQI 276          
BLAST of CK932940 vs. ExPASy Swiss-Prot
Match: G3O22_WHEAT (Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.396e-11
Identity = 39/116 (33.62%), Postives = 65/116 (56.03%), Query Frame = -3
Query:   42 VIDEYCKELVRLSGRLMKALSINLGISEDRLQNAFGGDNIG----ACLRVNFYPKCPQPDLTLGLSSHSDPGGLTLLLPDHQVTGLQV-RKG-DNWITVKPAKHAFIVNIGXXXQV 371
            V++E+ +E+  L+ +L++   + LG++ +++        I     A + +N+YPKCP P   LGL +H+D G  T +L    V GLQ+ R G D W+TV     A +VN+G   Q+
Sbjct:  162 VMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEQKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVL-QSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQI 276          
BLAST of CK932940 vs. ExPASy Swiss-Prot
Match: G3O21_WHEAT (Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.741e-11
Identity = 39/116 (33.62%), Postives = 65/116 (56.03%), Query Frame = -3
Query:   42 VIDEYCKELVRLSGRLMKALSINLGISEDRLQNAFGGDNIG----ACLRVNFYPKCPQPDLTLGLSSHSDPGGLTLLLPDHQVTGLQV-RKG-DNWITVKPAKHAFIVNIGXXXQV 371
            V++E+ +E+  L+ +L++   + LG++ +++        I     A + +N+YPKCP P   LGL +H+D G  T +L    V GLQ+ R G D W+TV     A +VN+G   Q+
Sbjct:  162 VMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEHKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVL-QSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQI 276          
The following BLAST results are available for this feature:
BLAST of CK932940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
ACCH2_ARATH6.134e-1337.611-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
G3OX1_ARATH8.011e-1334.55Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis th... [more]
G3OX4_ARATH1.046e-1237.17Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis th... [more]
ACCH3_SOLLC1.785e-1235.141-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
FLS_MATIN2.331e-1238.32Flavonol synthase/flavanone 3-hydroxylase (Fragmen... [more]
G3OX2_ARATH3.044e-1234.55Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis th... [more]
DV4H_CATRO1.511e-1135.71Deacetoxyvindoline 4-hydroxylase OS=Catharanthus r... [more]
G3O23_WHEAT4.396e-1133.62Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aes... [more]
G3O22_WHEAT4.396e-1133.62Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aes... [more]
G3O21_WHEAT5.741e-1133.62Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aes... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_G09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932940 ID=CK932940; Name=CK932940; organism=Citrus sinensis; type=EST; length=415bp
GGGGAAAAAAAAGACCATAAATTAGGAAGTAATAAATAACTCACCTGAAN
NNNNTCGCCAATGTTGACGATGAAAGCATGCTTGGCCGGCTTCACGGTGA
TCCAATTATCGCCTTTGCGGACTTGAAGACCGGTGACTTGATGGTCCGGC
AAGAGTAGGGTCAAGCCGCCGGGGTCCGAATGCGACGACAAGCCAAGTGT
TAAGTCGGGCTGCGGACACTTTGGATAAAAATTAACCCTCAAACAGGCTC
CAATATTATCACCACCAAATGCATTCTGTAATCGATCTTCGCTTATTCCA
AGATTAATCGATAAAGCCTTCATTAACCTCCCACTTAGTCGCACCAATTC
CTTGCAGTACTCATCAATCACCTCCCTAATTGAAACAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA
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