CK932940

Overview
NameCK932940
Unique NameCK932940
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length415
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932940 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.498e-11
Identity = 38/118 (32.20%), Postives = 62/118 (52.54%), Query Frame = -3
Query:   42 SIREVIDEYCKELVRLSGRLMKALSINLGISED----RLQNAFGGDNIGACLRVNFYPKCPQPDLTLGLSSHSDPGGLTLLLPDHQVTGLQVRKGDNWITVKPAKHAFIVNIGXXXQV 383
            S RE +++Y  EL +++  L   ++ NLG+  +     L+  F  ++          P        LGLS HSD  GLTLL+  ++V GL ++K + W+ +KP   AF+VNIG   ++
Sbjct:  164 SFRETMEKYSMELQKVAMCLTGMMAKNLGLESEILTKPLRTVFNRED-------ELLPSMSSCGEGLGLSPHSDATGLTLLIQVNEVNGLHIKKDEKWVPIKPILGAFVVNIGDVIEI 274          
BLAST of CK932940 vs. ExPASy Swiss-Prot
Match: G3OX3_ARATH (Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.792e-11
Identity = 39/115 (33.91%), Postives = 66/115 (57.39%), Query Frame = -3
Query:   57 VIDEYCKELVRLSGRLMKALSINLGISEDRL------QNAFGGDNIGACLRVNFYPKCPQPDLTLGLSSHSDPGGLTLLLPDHQVTGLQV----RKGDNWITVKPAKHAFIVNIG 371
            V++EY K +  LS RL+  L  +LG++ + L      +   G D+I + L++N YP CP P L +GL+ H+D   LT+L   + + GL++     +G  WI V+P + + +V +G
Sbjct:  157 VMEEYQKAMDDLSHRLISMLMGSLGLTHEDLGWLVPDKTGSGTDSIQSFLQLNSYPVCPDPHLAMGLAPHTDSSLLTILYQGN-IPGLEIESPQEEGSRWIGVEPIEGSLVVIMG 270          
The following BLAST results are available for this feature:
BLAST of CK932940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
NCS1_COPJA7.498e-1132.20S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
G3OX3_ARATH9.792e-1133.91Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_G09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932940 ID=CK932940; Name=CK932940; organism=Citrus sinensis; type=EST; length=415bp
GGGGAAAAAAAAGACCATAAATTAGGAAGTAATAAATAACTCACCTGAAN
NNNNTCGCCAATGTTGACGATGAAAGCATGCTTGGCCGGCTTCACGGTGA
TCCAATTATCGCCTTTGCGGACTTGAAGACCGGTGACTTGATGGTCCGGC
AAGAGTAGGGTCAAGCCGCCGGGGTCCGAATGCGACGACAAGCCAAGTGT
TAAGTCGGGCTGCGGACACTTTGGATAAAAATTAACCCTCAAACAGGCTC
CAATATTATCACCACCAAATGCATTCTGTAATCGATCTTCGCTTATTCCA
AGATTAATCGATAAAGCCTTCATTAACCTCCCACTTAGTCGCACCAATTC
CTTGCAGTACTCATCAATCACCTCCCTAATTGAAACAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA
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