CK932948

Overview
NameCK932948
Unique NameCK932948
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK932948 vs. ExPASy Swiss-Prot
Match: RL19_SULSO (50S ribosomal protein L19e OS=Sulfolobus solfataricus GN=rpl19e PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.712e-11
Identity = 41/134 (30.60%), Postives = 64/134 (47.76%), Query Frame = 1 
Query:   61 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDG-FIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFK 459
            M +LK QKRL+AS+   G  ++ +  + + ++  + +R  IR L+KDG  I+ K   I       R K+   K      G RKG + AR  +K                 R+ K ID+H Y ++Y+K KG  +K
Sbjct:    1 MTNLKAQKRLAASIAGVGINRIKVVEDYIEDVQSSLTRDEIRNLIKDGKIIVLKKVGISGGRLKERRKKRSLKSEGKKSGSRKGKKGARANSKQMWVKRVRKIRAYLKWLRDHKVIDRHTYRELYLKTKGGNYK 134
The following BLAST results are available for this feature:
BLAST of CK932948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL19_SULSO5.712e-1130.6050S ribosomal protein L19e OS=Sulfolobus solfatari... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_F06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932948 ID=CK932948; Name=CK932948; organism=Citrus sinensis; type=EST; length=761bp
GGGGCCTTGTTGGTTCGTTACTGATCGCGAGAGACAGAGGGGGAGNNNNN
NGAAGGGAAAATGGTGTCGTTGAAGTTACAGAAGCGGCTCTCCGCTAGCG
TCCTCAAGTGCGGACGTGGCAAGGTCTGGCTTGACCCTAATGAGGTCAAC
GAAATCTCCATGGCCAACTCCAGGCAGAACATTAGGAAATTGGTGAAGGA
TGGTTTCATCATCAGGAAGCCAACAAAGATCCACTCCCGTTCTCGCGCTC
GCAGAATGAAGGAAGCCAAGAGGAAGGGCCGTCACTCTGGATATGGTAAG
AGAAAGGGTACTAGGGAGGCGAGGCTTCCCACCAAAATCCTCTGGATGAG
AAGGATGCGTGTGCTCAGGCGGTTGCTCCGCAAATACCGTGAGTCGAAGA
AAATTGACAAGCACATGTACCATGACATGTACATGAAGGTCAAGGGTAAT
GTATTTAAGAACAAGCGTGTCCTCATGGAGAGTATCCACAAGTCAAAGGC
TGAAAAGGCAAGAGAGAAGACTCTTTCTGACCAGTTTGAGGCTAAGCGCG
CCAAGAACAAGGCCAGCAGGGAGAGAAAGCTGGCCAGGAGAGAAGAGCGA
CTAGCACAGGGACCTGGAGAGAAGGCAGTACCAGCACCCCAACCAGCTGA
GGGAGCTAAGAAAGCTAAGAAGTGATCGCTGATACATCGATGATGGAGAC
TGAAGATTGATAACTTATATATGTTAATGTTGGTTCTGGTTTCTTTGTAG
GAGTTTGTTTC
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