CK932965

Overview
NameCK932965
Unique NameCK932965
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932965_ssr83 microsatellite CK932965_ssr83:83..109. BLAST: Citrus ESTs to Prunus persica proteins V1
CK932965_ssr105 microsatellite CK932965_ssr105:105..116. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9730 contig Csv1_Contig9730:1..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932965 vs. ExPASy Swiss-Prot
Match: AQP2_ORYAF (Aquaporin-2 (Fragment) OS=Orycteropus afer GN=AQP2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.919e-11
Identity = 40/102 (39.22%), Postives = 58/102 (56.86%), Query Frame = 2
Query:  227 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV 532
            +F +A+ +EF+ATLLF++  + + +   +   +      L IA AFG  I  LV     ISG HINPAVT    +   VS +RA+ Y+ AQ LGA+ G  L+
Sbjct:    3 AFSKAVFSEFLATLLFVFFGLGSALNWPQALPSG-----LQIAMAFGLAIGTLVQTLGHISGAHINPAVTVACLVGCHVSFLRAIFYVAAQLLGAVAGAALL 99          
BLAST of CK932965 vs. ExPASy Swiss-Prot
Match: NIP21_ORYSJ (Aquaporin NIP2-1 OS=Oryza sativa subsp. japonica GN=NIP2-1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.424e-11
Identity = 61/204 (29.90%), Postives = 98/204 (48.04%), Query Frame = 2
Query:  236 RALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGL----------LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIMGTFVLVY-TVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITXTGINPARSFGAAV 814
            + +++E VAT L ++++             CG  G+          LG + A G ++ V++Y    ISG H+NPAVT    + R    I+   Y  AQ  GAIC   ++KA + H  + +G    T   G +  S L  E++ TF +++ T+  ATD +       V  LA L +G AV +  +    I+   +NPAR+ G A+
Sbjct:   49 KKVVSEVVATFLLVFMT-------------CGAAGISGSDLSRISQLGQSIAGGLIVTVMIYAVGHISGAHMNPAVTLAFAVFRHFPWIQVPFYWAAQFTGAICASFVLKAVI-HPVDVIG---TTTPVGPHWHS-LVVEVIVTFNMMFVTLAVATDTRA------VGELAGLAVGSAVCITSIFAGAISGGSMNPARTLGPAL 228          
BLAST of CK932965 vs. ExPASy Swiss-Prot
Match: GLPF_THEMA (Probable glycerol uptake facilitator protein OS=Thermotoga maritima GN=glpF PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.390e-11
Identity = 59/193 (30.57%), Postives = 85/193 (44.04%), Query Frame = 2
Query:  245 IAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV-KAFMKHEYNSLGGGAN-----TVASGYNKGSALGAEIMGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITXTGINPARSFG 805
            +AEF+ T+L + +    V     +       G + I   +G  + + VY    ISG HINPAVT GL    +    +   Y+ +Q LGA  G  LV   ++ H   +    A      T  +    G+ L  EI+GT VL+  V      K +        L PL +GF V+ + L+    T   INPAR FG
Sbjct:    5 LAEFLGTMLLIILGDGVVANVVLKKSKGHNSGWIVITTGWGLAVAMSVYLVGRISGAHINPAVTIGLAFIGQFPWSKVPGYIFSQILGAFVGAILVYLTYLPHWKETDDPDAKLAVFCTGPAVRKYGANLLTEIIGTMVLLMGVLGIGANKLA------DGLNPLLVGFLVWSIGLSLGGPTGYAINPARDFG 191          
The following BLAST results are available for this feature:
BLAST of CK932965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
AQP2_ORYAF4.919e-1139.22Aquaporin-2 (Fragment) OS=Orycteropus afer GN=AQP2... [more]
NIP21_ORYSJ6.424e-1129.90Aquaporin NIP2-1 OS=Oryza sativa subsp. japonica G... [more]
GLPF_THEMA8.390e-1130.57Probable glycerol uptake facilitator protein OS=Th... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_D08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932965 ID=CK932965; Name=CK932965; organism=Citrus sinensis; type=EST; length=819bp
GGGGACAGACGCTACCTTTTCTCGAGACCAGAGAGGGTGTGTGCTTTTCT
TTGATTGTTCCAAAGAGAAATCAAAATCTTGTGAAGAAGAAGAAGAAGAA
GAAGAAGAAAGAAAGATGTCAAAGGAAGTGAATGAAGAAGGACAAACTCA
CCGCCATCACCATGGCAAGGACTACGTGGACCCACCACCAGCACCACTCA
TTGACATGGCTGAGCTCAAGCTCTGGTCCTTTTACAGAGCTCTCATAGCC
GAGTTCGTGGCCACTCTCCTCTTCCTCTACGTCAGTGTTGCCACTGTCAT
TGGCCACAAGAAACAAAGTGATGCCTGTGGTGGTGTTGGCCTTTTGGGTA
TTGCATGGGCCTTTGGTGGCATGATCTTCGTCCTTGTTTACTGCACCGCT
GGCATTTCTGGTGGTCACATTAACCCTGCTGTGACGTTTGGGCTGTTCTT
GGCAAGGAAGGTATCATTGATCAGGGCTGTGGCTTACATGGTGGCTCAGT
GCTTGGGTGCCATTTGCGGTGTTGGTTTGGTCAAGGCCTTCATGAAGCAT
GAGTACAACTCACTTGGTGGTGGTGCTAACACTGTGGCTTCTGGCTACAA
CAAAGGATCAGCCTTGGGTGCTGAGATTATGGGTACCTTCGTGCTTGTTT
ACACAGTCTTCTCGGCCACAGACCCCAAGAGAAGCGCTCGTGACTCTCAC
GTGCCCGTTTTGGCTCCACTTCCAATTGGATTTGCTGTGTTCATGGTTCA
CTTGGCCACCATCCCCATCACNNNNACGGGCATCAACCCTGCTAGGAGCT
TTGGTGCTGCTGTTATCTA
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