CK932965

Overview
NameCK932965
Unique NameCK932965
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932965_ssr83 microsatellite CK932965_ssr83:83..109. BLAST: Citrus ESTs to Prunus persica proteins V1
CK932965_ssr105 microsatellite CK932965_ssr105:105..116. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9730 contig Csv1_Contig9730:1..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932965 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.970e-24
Identity = 71/204 (34.80%), Postives = 108/204 (52.94%), Query Frame = 2
Query:  206 MAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIMGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITXTGINPARSFGAAVI 817
            M EL+  SF+RA+ AEF ATL +++  +   +       A G + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA  Y+ AQ LGA+ G  ++ +             NT+ +G + G A   EI  T   V  +F+  D +R+ R   V     L +GF++ + HL  +  T  G+NPARSF  A++
Sbjct:    1 MWELRSASFWRAIFAEFFATLFYVFFGLGASLRW-----APGPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRG-NLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL 194          
BLAST of CK932965 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.879e-24
Identity = 70/202 (34.65%), Postives = 108/202 (53.47%), Query Frame = 2
Query:  212 ELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIMGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITXTGINPARSFGAAVI 817
            EL+  SF+RA+ AEF ATL +++  + + +       A G + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA  Y+ AQ LGA+ G  ++ +             NT+ +G + G A   EI  T   V  +F+  D +R+ R   V     L +GF++ + HL  +  T  G+NPARSF  A++
Sbjct:    1 ELRSASFWRAIFAEFFATLFYVFFGLGSSLRW-----APGPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRG-NLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL 192          
BLAST of CK932965 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.879e-24
Identity = 71/204 (34.80%), Postives = 106/204 (51.96%), Query Frame = 2
Query:  206 MAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIMGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITXTGINPARSFGAAVI 817
            M EL+  SF+RA+ AEF ATL +++  +   +         G + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA  YM AQ LGA+ G  ++ +             NT+  G + G A   EI  T   V  +F+  D +R+ R   V     L +GF++ + HL  +  T  G+NPARSF  A++
Sbjct:    1 MWELRSASFWRAIFAEFFATLFYVFFGLGASLRWTP-----GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRG-NLALNTLHPGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL 194          
BLAST of CK932965 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.067e-24
Identity = 77/196 (39.29%), Postives = 109/196 (55.61%), Query Frame = 2
Query:  236 RALIAEFVATLLFLYVSVATVI--GHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIMGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITXTGINPARSFGAAV 814
            +A +AEF+ATLLF++  V + I  G      A    GL+ IA A    +FV V   A  SGGH+NPAVTFGL +   ++++  + Y VAQ LGA     L++ F+ H         + V+ G  +   +  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +   +NPARSFG AV
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAFGQLTNGGALDPAGLVAIAVAHALALFVGVSVAANTSGGHLNPAVTFGLAVGGHITVLTGLFYWVAQLLGASVACLLLR-FVTH---GKAIPTHGVSGGTTELEGVVFEIVITFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV 206          
BLAST of CK932965 vs. ExPASy Swiss-Prot
Match: TIP32_MAIZE (Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.617e-24
Identity = 75/204 (36.76%), Postives = 108/204 (52.94%), Query Frame = 2
Query:  236 RALIAEFVATLLFLYVSVATVIG-----HKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGAN----TVASGYNKGSALGAEIMGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITXTGINPARSFGAAVI 817
            RA I+EF+AT +F++ +  +V+      H   + +  G GL+ +A A    + V V     +SGGH+NPAVTFG  +  +VSL+RAV Y  AQ LGA+    L++           GGA      +ASG   G A+  E + TF  VY  + +  DPKR     H+  +APL +GF +    LA  P    G+NPAR FG A++
Sbjct:   28 RAAISEFIATAIFVFAAEGSVLSLGKMYHDHSTISTAG-GLVAVALAHALGLAVAVAVAVNVSGGHVNPAVTFGALVGGRVSLVRAVLYWAAQLLGAVAATLLLRL--------ATGGARPPGFALASGVGDGHAVLLEAVMTFGFVYAYYATVVDPKR----GHLGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALV 218          
BLAST of CK932965 vs. ExPASy Swiss-Prot
Match: AQP_AEDAE (Aquaporin AQPAe.a OS=Aedes aegypti GN=AAEL003512 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.129e-23
Identity = 68/201 (33.83%), Postives = 105/201 (52.24%), Query Frame = 2
Query:  227 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGG---VGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANTVASGYNKGSALGAEIMGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITXTGINPARSFGAAVI 817
            + +R L+AEF+ T   + + + + +G        GG     +  IA+ FG ++  L      +SG HINPAVT GL +   +S+++   Y+V+QC+GAI G  L+KA    +   +GG G   +      G  +  E + TF+LV+ V    D +R    S +   APL IG ++   HL+ I  T   +NPARSFG AV+
Sbjct:   21 NIWRMLVAEFLGTFFLVSIGIGSTMGW-------GGDYAPTMTQIAFTFGLVVATLAQAFGHVSGCHINPAVTIGLMITADISILKGAFYIVSQCVGAIAGAALIKAATPSDV--IGGLGVTGIDPRLTAGQGVMIEALITFILVFVVHGVCDNRR----SDIKGSAPLAIGLSITAGHLSAIKYTGASMNPARSFGPAVV 208          
BLAST of CK932965 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.474e-23
Identity = 71/204 (34.80%), Postives = 107/204 (52.45%), Query Frame = 2
Query:  206 MAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIMGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITXTGINPARSFGAAVI 817
            M EL+  SF+RA+ AEF ATL +++  +   +       A G + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA  YM AQ LGA+ G  ++ +             NT+ +G +   A   EI  T   V  +F+  D +R+ R   V     L +GF++ + HL  +  T  G+NPARSF  A++
Sbjct:    1 MWELRSASFWRAIFAEFFATLFYVFFGLGASLRW-----APGPLHVLQVALAFGLALAXLVQTVGHISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRG-NLALNTLHAGVSVXQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL 194          
BLAST of CK932965 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.925e-23
Identity = 70/204 (34.31%), Postives = 107/204 (52.45%), Query Frame = 2
Query:  206 MAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIMGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITXTGINPARSFGAAVI 817
            M EL+  SF+RA+ AEF ATL +++  + + +       A G + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA  YM AQ LGA+ G  ++ +             NT+    + G A   EI  T   V  +F+  D +R+ +   V     L +GF++ + HL  +  T  G+NPARSF  A++
Sbjct:    1 MWELRSASFWRAIFAEFFATLFYVFFGLGSSLRW-----APGPLHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRG-NLALNTLHPAVSVGQATTVEIFLTLQFVLCIFATYDERRNGQLGSV----ALAVGFSLALGHLFGMYYTGAGMNPARSFAPAIL 194          
BLAST of CK932965 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.284e-23
Identity = 76/201 (37.81%), Postives = 110/201 (54.73%), Query Frame = 2
Query:  236 RALIAEFVATLLFLYVSVATVIGHKKQSD--ACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKG----SALGAEIMGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITXTGINPARSFGAAVI 817
            RA +AEF++TL+F++    + I   K +D  A    GL+  A A    +FV V   A ISGGH+NPAVTFG+ L   ++L+R + Y +AQ LG++    L+        +   GG    A G + G    +AL  EI+ TF LVYTV+ +A DPK  +    +  +AP+ IGF V    LA    +   +NPA +FG AV+
Sbjct:   22 RAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLVAAALAHAFGLFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAACFLL--------SFATGGEPIPAFGLSAGVGSLNALVFEIVMTFGLVYTVYATAVDPKNGS----LGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVV 210          
BLAST of CK932965 vs. ExPASy Swiss-Prot
Match: AQP2_SHEEP (Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.284e-23
Identity = 75/208 (36.06%), Postives = 109/208 (52.40%), Query Frame = 2
Query:  206 MAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYN--SLGG--GANTVASGYNKGSALGAEIMGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITXTGINPARSFGAAVI 817
            M EL+  +F RA++AEF+ATLLF++  + + +   +   +     +L IA AFG  I  LV     +SG HINPAVT    +   VS +RAV Y+ AQ LGA+ G  L+     HE    ++ G    N + +    G A+  E+  T  LV  +F +TD +R  +  H      L IGF+V + HL  I  T   +NPARS   A++
Sbjct:    1 MWELRSIAFSRAVLAEFLATLLFVFFGLGSALNWPQALPS-----VLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAVFYVAAQLLGAVAGAALL-----HEITPPAIRGDLAVNALNNNSTAGQAVTVELFLTLQLVLCIFPSTDKRRGKQLGH----PALSIGFSVALGHLLGIHYTGCSMNPARSLAPAIV 194          
The following BLAST results are available for this feature:
BLAST of CK932965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
MIP_MOUSE2.970e-2434.80Lens fiber major intrinsic protein OS=Mus musculus... [more]
MIP_RAT3.879e-2434.65Lens fiber major intrinsic protein (Fragment) OS=R... [more]
MIP_CANFA3.879e-2434.80Lens fiber major intrinsic protein OS=Canis famili... [more]
TIP22_MAIZE5.067e-2439.29Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]
TIP32_MAIZE6.617e-2436.76Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1[more]
AQP_AEDAE1.129e-2333.83Aquaporin AQPAe.a OS=Aedes aegypti GN=AAEL003512 P... [more]
MIP_CAVPO1.474e-2334.80Lens fiber major intrinsic protein OS=Cavia porcel... [more]
MIP_HUMAN1.925e-2334.31Lens fiber major intrinsic protein OS=Homo sapiens... [more]
TIP12_ARATH3.284e-2337.81Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
AQP2_SHEEP3.284e-2336.06Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_D08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932965 ID=CK932965; Name=CK932965; organism=Citrus sinensis; type=EST; length=819bp
GGGGACAGACGCTACCTTTTCTCGAGACCAGAGAGGGTGTGTGCTTTTCT
TTGATTGTTCCAAAGAGAAATCAAAATCTTGTGAAGAAGAAGAAGAAGAA
GAAGAAGAAAGAAAGATGTCAAAGGAAGTGAATGAAGAAGGACAAACTCA
CCGCCATCACCATGGCAAGGACTACGTGGACCCACCACCAGCACCACTCA
TTGACATGGCTGAGCTCAAGCTCTGGTCCTTTTACAGAGCTCTCATAGCC
GAGTTCGTGGCCACTCTCCTCTTCCTCTACGTCAGTGTTGCCACTGTCAT
TGGCCACAAGAAACAAAGTGATGCCTGTGGTGGTGTTGGCCTTTTGGGTA
TTGCATGGGCCTTTGGTGGCATGATCTTCGTCCTTGTTTACTGCACCGCT
GGCATTTCTGGTGGTCACATTAACCCTGCTGTGACGTTTGGGCTGTTCTT
GGCAAGGAAGGTATCATTGATCAGGGCTGTGGCTTACATGGTGGCTCAGT
GCTTGGGTGCCATTTGCGGTGTTGGTTTGGTCAAGGCCTTCATGAAGCAT
GAGTACAACTCACTTGGTGGTGGTGCTAACACTGTGGCTTCTGGCTACAA
CAAAGGATCAGCCTTGGGTGCTGAGATTATGGGTACCTTCGTGCTTGTTT
ACACAGTCTTCTCGGCCACAGACCCCAAGAGAAGCGCTCGTGACTCTCAC
GTGCCCGTTTTGGCTCCACTTCCAATTGGATTTGCTGTGTTCATGGTTCA
CTTGGCCACCATCCCCATCACNNNNACGGGCATCAACCCTGCTAGGAGCT
TTGGTGCTGCTGTTATCTA
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