CK932972

Overview
NameCK932972
Unique NameCK932972
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932972_ssr203 microsatellite CK932972_ssr203:203..226. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1509 contig Csv1_Contig1509:1..874. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932972 vs. ExPASy Swiss-Prot
Match: CYBR1_XENTR (Cytochrome b reductase 1 OS=Xenopus tropicalis GN=cybrd1 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 4.147e-19
Identity = 60/190 (31.58%), Postives = 88/190 (46.32%), Query Frame = 3
Query:  312 WCLGFRGGLAWEDTNKNLIFNLHPVXXXXXXXXXXXEAIMSYK---GLNLRKEVKKXXXXXXXXXXXXXXXXXXYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTF-LENSGLAKYGSEALLVNFTAVITILYGAFVIF 869
            W L +R GL W+       FN HPV            AI+ Y+     N  K + K                   A F +HN   I N+YSLHSW+G+ V+ LY +Q + G  I+  P     LR+  +P HV  GL ++   +A A +G  EKL F L+    +K   EA+ VN   +I +++G  V++
Sbjct:   28 WVLHWREGLGWDGGAAE--FNWHPVLVTSGFIFIQGIAIIVYRLPWTWNCSKLLMKFIHAGLHLTAFVFTIVALVAVFDFHNAKNIPNMYSLHSWIGLTVVILYALQLVLGVSIYLLPFARDTLRAALMPVHVYSGLLIFGTVIATALMGITEKLIFSLKEPPYSKMPPEAIFVNTFGLIILVFGGLVVW 215          
BLAST of CK932972 vs. ExPASy Swiss-Prot
Match: CYAC3_HUMAN (Cytochrome b ascorbate-dependent protein 3 OS=Homo sapiens GN=CYBASC3 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.576e-18
Identity = 61/192 (31.77%), Postives = 82/192 (42.71%), Query Frame = 3
Query:  312 WCLGFRGGLAWEDTNKNLIFNLHPVXXXXXXXXXXXEAIMSYKGLNLRKEVK---KXXXXXXXXXXXXXXXXXXYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKY---GSEALLVNFTAVITILYGAFVIF 869
            W   +RGG AW  +    +FN HPV            A + Y+        K   K                   A F +HN     NLYSLHSWLGI  + L+  QW  GF +F  P  S  LRS   P HV FG  +  L++A+   G  EKL F   +    Y    SEA+  N T ++ + +G  V++
Sbjct:   27 WMQYWRGGFAWNGSI--YMFNWHPVLMVAGMVVFYGGASLVYRLPQSWVGPKLPWKLLHAALHLMAFVLTVVGLVAVFTFHNHGRTANLYSLHSWLGITTVFLFACQWFLGFAVFLLPWASMWLRSLLKPIHVFFGAAILSLSIASVISGINEKLFFSLKNTTRPYHSLPSEAVFANSTGMLVVAFGLLVLY 216          
BLAST of CK932972 vs. ExPASy Swiss-Prot
Match: CYBR1_DANRE (Cytochrome b reductase 1 OS=Danio rerio GN=cybrd1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.058e-18
Identity = 57/190 (30.00%), Postives = 88/190 (46.32%), Query Frame = 3
Query:  312 WCLGFRGGLAWEDTNKNLIFNLHPVXXXXXXXXXXXEAIMSYK---GLNLRKEVKKXXXXXXXXXXXXXXXXXXYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTF-LENSGLAKYGSEALLVNFTAVITILYGAFVIF 869
            W L +R GL W+       FN HP+            AI+ Y+        K++ K                   A F +HN   I N+YSLHSW+G+A + LY  Q + G  ++  P     +R+  +P H+  GLF++I  +A A +G  EKL F L++        EA+LVN   ++   +GA V++
Sbjct:   28 WVLHYREGLGWDGGAAE--FNWHPLLMVIGFIFLQGIAIVVYRLPWTWRCSKQMMKLIHAGLHILAFILAVISVVAVFVFHNAKNIPNMYSLHSWVGLAAVVLYPSQIVLGIAVYLIPVTPVRVRAALMPLHIYSGLFIFISVIAAALMGITEKLIFSLKSPAYKDSPPEAVLVNVLGLLIAAFGALVVW 215          
BLAST of CK932972 vs. ExPASy Swiss-Prot
Match: CY561_CAEEL (Putative cytochrome b561 OS=Caenorhabditis elegans GN=F55H2.5 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.585e-18
Identity = 60/198 (30.30%), Postives = 92/198 (46.46%), Query Frame = 3
Query:  312 WCLGFRGGLAW-EDTNKNLIFNLHPVXXXXXXXXXXXEAIMSYKGL-NLRKEVKKXXXXXXXXXXXXXXXXXXYAAFKYHN--------ESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYG---SEALLVNFTAVITILYGAFVI 866
            W   F  G AW ED +K   FN HP            EA++ Y+   N RK+  K                   A F YHN         + IVNL SLHSW+G++V+ LY  Q++ GF+ +F+PG    +R   +P+H +FG+ ++I      A+G  E+  + +++   K G   ++    +F  V T LY   V+
Sbjct:   42 WMSKFESGFAWNEDPDKE--FNYHPTFMIMGMVFLFGEALLVYRVFRNERKKFSKTLHVILHSCVLVFMLMALKAVFDYHNLHKDPSGNPAPIVNLVSLHSWIGLSVVILYFAQYIVGFITYFFPGMPIPIRQLVMPFHQMFGVLIFIFVSITVAMGISERAAW-KHTCWTKEGQMCAQQATSSFVGVFTFLYTVCVL 236          
BLAST of CK932972 vs. ExPASy Swiss-Prot
Match: CY561_XENLA (Cytochrome b561 OS=Xenopus laevis GN=cyb561 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.821e-18
Identity = 50/170 (29.41%), Postives = 83/170 (48.82%), Query Frame = 3
Query:  363 LIFNLHPVXXXXXXXXXXXEAIMSYKGLNLR-KEVKKXXXXXXXXXXXXXXXXXXYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYGSEALLVNFTAVITILYGAFVIF 869
            L FN+HP+           EA++ Y+      K   K                   A F+YH  +   ++YSLHSW GI   +LY +QW+ GF +FF PG +   RS+  P H  FG  +++ ++A + +G  EK+     S  + + +E +LVN   V+ +++GA + +
Sbjct:   48 LQFNVHPLCMVLGMVFLCGEALLVYRVFRHETKRSTKILHGVLHIMALVISLVGVIAVFQYHQANGYPDMYSLHSWCGIVTFTLYILQWIIGFSLFFIPGVAFTYRSQFKPLHEFFGRALFLSSIATSLLGLTEKMF----SEYSSHPAEGILVNSLGVLLVVFGAVIAY 213          
BLAST of CK932972 vs. ExPASy Swiss-Prot
Match: CYBR1_HUMAN (Cytochrome b reductase 1 OS=Homo sapiens GN=CYBRD1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.021e-17
Identity = 56/190 (29.47%), Postives = 88/190 (46.32%), Query Frame = 3
Query:  312 WCLGFRGGLAWEDTNKNLIFNLHPVXXXXXXXXXXXEAIMSYK---GLNLRKEVKKXXXXXXXXXXXXXXXXXXYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTF-LENSGLAKYGSEALLVNFTAVITILYGAFVIF 869
            W L +R GL W+ +   L FN HPV            AI+ Y+        K + K                   A F+ HN + I N+YSLHSW+G+  +  Y +Q L GF +F  P     LR+  +P HV  G+ ++   +A A +G  EKL F L +   + +  E + VN   ++ +++GA + +
Sbjct:   30 WVLHYREGLGWDGSA--LEFNWHPVLMVTGFVFIQGIAIIVYRLPWTWKCSKLLMKSIHAGLNAVAAILAIISVVAVFENHNVNNIANMYSLHSWVGLIAVICYLLQLLSGFSVFLLPWAPLSLRAFLMPIHVYSGIVIFGTVIATALMGLTEKLIFSLRDPAYSTFPPEGVFVNTLGLLILVFGALIFW 217          
BLAST of CK932972 vs. ExPASy Swiss-Prot
Match: CYBR1_RAT (Cytochrome b reductase 1 OS=Rattus norvegicus GN=Cybrd1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.334e-17
Identity = 59/190 (31.05%), Postives = 85/190 (44.74%), Query Frame = 3
Query:  312 WCLGFRGGLAWEDTNKNLIFNLHPVXXXXXXXXXXXEAIMSYK---GLNLRKEVKKXXXXXXXXXXXXXXXXXXYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTF-LENSGLAKYGSEALLVNFTAVITILYGAFVIF 869
            W L FR GL W+     L FN HPV            AI+ Y+        K + K                   A F YHN   I ++YSLHSW+G+ V+ LY  Q + GF IF  P     LR+  +P HV  GL ++   +A   +G  EKL F L+N     +  E +  N   ++ +++GA + +
Sbjct:   30 WVLHFREGLGWD--GGALEFNWHPVLAVTGFVFIQGIAIIVYRLPWTWKCSKFLMKSIHAGLNAVAAILAIISVVAVFDYHNVRKIPHMYSLHSWVGLTVLILYIQQLVVGFFIFLLPWAPPSLRAIVMPIHVYSGLLLFGTVIATVLMGVTEKLFFVLKNPSYHSFPPEGVFTNTLGLLILVFGALIFW 217          
BLAST of CK932972 vs. ExPASy Swiss-Prot
Match: CYBR1_MOUSE (Cytochrome b reductase 1 OS=Mus musculus GN=Cybrd1 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 6.621e-17
Identity = 55/190 (28.95%), Postives = 85/190 (44.74%), Query Frame = 3
Query:  312 WCLGFRGGLAWEDTNKNLIFNLHPVXXXXXXXXXXXEAIMSYK---GLNLRKEVKKXXXXXXXXXXXXXXXXXXYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTF-LENSGLAKYGSEALLVNFTAVITILYGAFVIF 869
            W L FR GL W  +   L FN HPV            AI+ Y+        K + K                   A F+YHN   + ++YSLHSW+G+  + LY  Q + GF +F  P     LR+  +P HV  GL ++   +A   +G  EKL F L++     +  E +  N   ++ +++GA + +
Sbjct:   30 WVLHFREGLGWNGSG--LEFNWHPVLAVTGFVFIQGIAIIVYRLPWTWKCSKLLMKSIHAGLNAVAAILAIISVVAVFEYHNVQKVPHMYSLHSWVGLTALILYIQQLVVGFFVFLLPWAPPSLRAIVMPIHVYSGLLLFGTVIATVLMGVTEKLFFVLKHPSYHSFPPEGVFTNTLGLLILVFGALIFW 217          
BLAST of CK932972 vs. ExPASy Swiss-Prot
Match: CYBR1_PONAB (Cytochrome b reductase 1 OS=Pongo abelii GN=CYBRD1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.286e-16
Identity = 56/191 (29.32%), Postives = 88/191 (46.07%), Query Frame = 3
Query:  312 WCLGFRGGLAWEDTNKNLIFNLHPVXXXXXXXXXXXEAIMSYK---GLNLRKEVKKXXXXXXXXXXXXXXXXXXYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTF-LENSGLAKYGSEAL-LVNFTAVITILYGAFVIF 869
            W L +R GL W+ +   L FN HPV            AI+ Y+        K + K                   A F+ HN + I N+YSLHSW+G+  +  Y +Q L GF +F  P     LR+  +P HV  G+ ++   +A A +G  EKL F L +   + +  E +  VN   ++ +++GA + +
Sbjct:   30 WVLHYREGLGWDGSA--LEFNWHPVLMVTGFVFIQGIAIIVYRLSWTWKCSKLLMKSIHAGLNAVAAILAVISVVAVFENHNVNNIANMYSLHSWVGLIAVICYLLQLLAGFSVFLLPWAPLSLRAFLMPIHVYSGIVIFGTVIATALMGVTEKLIFSLRDPAYSTFPPEGVFFVNTLGLLILVFGALIFW 218          
BLAST of CK932972 vs. ExPASy Swiss-Prot
Match: CYAC3_DANRE (Cytochrome b ascorbate-dependent protein 3 OS=Danio rerio GN=cybasc3 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.291e-16
Identity = 59/196 (30.10%), Postives = 84/196 (42.86%), Query Frame = 3
Query:  312 WCLGFRGGLAWEDTNKNLIFNLHPVXXXXXXXXXXXEAIMSYK-----GLNLRKEVKKXXXXXXXXXXXXXXXXXXYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFL---ENSGLAKYGS---EALLVNFTAVITILYGAFVI 866
            W   +R G AW+ ++KN  FN HPV            A + Y+     G N  K   K                   A F +HN     NLYSLHSW+GI   +L+  QW+ GF  F  P     +R+   P HV  G  + +L++ +   G  EKL F+     +G   Y +   EA+  N   VI + +G  V+
Sbjct:   28 WNFMYRDGFAWDGSSKN--FNWHPVLMVTGMLVLYGNAAVVYRIPLTWGHN--KLPWKLLHAGLLLLSFIFSVIGLCAVFNFHNVHHTANLYSLHSWVGICTAALFTAQWVMGFTSFLLPCTPMAVRAFVKPTHVWMGAMILVLSIVSCISGINEKLFFVLKETTNGTKPYSALPPEAVAANSLGVIIVAFGLVVL 219          
The following BLAST results are available for this feature:
BLAST of CK932972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CYBR1_XENTR4.147e-1931.58Cytochrome b reductase 1 OS=Xenopus tropicalis GN=... [more]
CYAC3_HUMAN1.576e-1831.77Cytochrome b ascorbate-dependent protein 3 OS=Homo... [more]
CYBR1_DANRE2.058e-1830.00Cytochrome b reductase 1 OS=Danio rerio GN=cybrd1 ... [more]
CY561_CAEEL4.585e-1830.30Putative cytochrome b561 OS=Caenorhabditis elegans... [more]
CY561_XENLA7.821e-1829.41Cytochrome b561 OS=Xenopus laevis GN=cyb561 PE=2 S... [more]
CYBR1_HUMAN1.021e-1729.47Cytochrome b reductase 1 OS=Homo sapiens GN=CYBRD1... [more]
CYBR1_RAT1.334e-1731.05Cytochrome b reductase 1 OS=Rattus norvegicus GN=C... [more]
CYBR1_MOUSE6.621e-1728.95Cytochrome b reductase 1 OS=Mus musculus GN=Cybrd1... [more]
CYBR1_PONAB3.286e-1629.32Cytochrome b reductase 1 OS=Pongo abelii GN=CYBRD1... [more]
CYAC3_DANRE4.291e-1630.10Cytochrome b ascorbate-dependent protein 3 OS=Dani... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_C07 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_C07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932972 ID=CK932972; Name=CK932972; organism=Citrus sinensis; type=EST; length=874bp
GGGGGGAATGTGAATAACTAGCCCAGTAATTAGCAAAGTCCACGTGGCAC
CGACCCAAGATGAAACAGAGATCTCCATCCAACGGTCGGACTCAAGTAAA
ATAATTCGTACAGAAACAACAACTCAGCAGACGTAGCCAAAGAAACAGAT
AAAGGGCCAACGACTTTGCTAACTCTGTAAGCAGCTTTTCTTCTGCCTCT
CAAAGAAGAAGAAGAAGAAGAAGAAGAGAGATGGCTATCGGAGTAAAAGC
TCTTCCGATCACGTTTGTGGCACACGCGGTTGCCATCGTGGCTGCGATTA
TGGTGCTGGTTTGGTGCCTTGGCTTTCGCGGTGGATTAGCATGGGAAGAT
ACTAATAAAAATCTCATCTTCAATCTACATCCTGTGCTGATGCTGATTGG
CTTAATCATCATTGGGGGTGAAGCCATTATGAGTTACAAAGGACTTAATT
TGAGAAAAGAAGTGAAGAAAGTGATACACCTTGTTCTCCATGCTATTGCG
CTTATACTGGGCATTATCGGCATCTATGCTGCTTTCAAATATCATAACGA
GAGCGCCATTGTCAATCTTTATAGCTTGCATTCTTGGCTTGGAATTGCCG
TAATTTCCCTTTATGGCATTCAGTGGTTATACGGGTTTGTAATTTTCTTC
TATCCTGGAGGATCAACTGGACTAAGAAGTGAATCGCTTCCATGGCACGT
ACTATTCGGGCTGTTTGTGTACATTCTGGCCGTTGCCAATGCAGCCATCG
GGTTCCTGGAGAAGCTCACATTCCTGGAGAATTCAGGCCTTGCTAAATAT
GGCTCTGAGGCTTTGCTTGTCAACTTCACCGCTGTTATCACAATCTTATA
TGGAGCCTTTGTTATATTCTCTGT
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