CK932973 | Citrus Genome Database

Overview


Name	CK932973
Unique Name	CK932973
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	629

Libraries


Library Name	Type
Developing fruit juice sac at 38 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CK932973_ssr470	microsatellite	CK932973_ssr470:470..481.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9684	contig	Csv1_Contig9684:168..802.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CK932973 vs. ExPASy Swiss-Prot
Match: YPEL1_CERAE (Protein yippee-like 1 OS=Cercopithecus aethiops GN=YPEL1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 42/95 (44.21%), Postives = 65/95 (68.42%), Query Frame = 2

Query:  110 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 394
            +SC +C   LA H +LISK+F+   G+AY+F++ +NV  G  E++ ++TG++ +A IYC NC   LGW Y  A++  QK+KEG FI+E   M+K+
Sbjct:   21 YSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIYCENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKD 115

[Close]

BLAST of CK932973 vs. ExPASy Swiss-Prot
Match: YPEL3_MOUSE (Protein yippee-like 3 OS=Mus musculus GN=Ypel3 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.055e-19
Identity = 41/95 (43.16%), Postives = 66/95 (69.47%), Query Frame = 2

Query:  110 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 394
            +SC +C   LA H DLISK+F+   G+AY+F++ +NV  G  E++ ++TG++ +A I+C NC   LGW Y +A++  QK+KEG +I+E   M+K+
Sbjct:   21 YSCAHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIHCENCKTTLGWKYEQAFESSQKYKEGKYIIELNHMIKD 115

[Close]

BLAST of CK932973 vs. ExPASy Swiss-Prot
Match: YPEL3_HUMAN (Protein yippee-like 3 OS=Homo sapiens GN=YPEL3 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.055e-19
Identity = 41/95 (43.16%), Postives = 66/95 (69.47%), Query Frame = 2

Query:  110 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 394
            +SC +C   LA H DLISK+F+   G+AY+F++ +NV  G  E++ ++TG++ +A I+C NC   LGW Y +A++  QK+KEG +I+E   M+K+
Sbjct:   21 YSCAHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIHCENCKTTLGWKYEQAFESSQKYKEGKYIIELNHMIKD 115

[Close]

BLAST of CK932973 vs. ExPASy Swiss-Prot
Match: YPEL3_CERAE (Protein yippee-like 3 OS=Cercopithecus aethiops GN=YPEL3 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.055e-19
Identity = 41/95 (43.16%), Postives = 66/95 (69.47%), Query Frame = 2

Query:  110 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 394
            +SC +C   LA H DLISK+F+   G+AY+F++ +NV  G  E++ ++TG++ +A I+C NC   LGW Y +A++  QK+KEG +I+E   M+K+
Sbjct:   21 YSCAHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIHCENCKTTLGWKYEQAFESSQKYKEGKYIIELNHMIKD 115

[Close]

BLAST of CK932973 vs. ExPASy Swiss-Prot
Match: YPEL3_BOVIN (Protein yippee-like 3 OS=Bos taurus GN=YPEL3 PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.055e-19
Identity = 41/95 (43.16%), Postives = 66/95 (69.47%), Query Frame = 2

Query:  110 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 394
            +SC +C   LA H DLISK+F+   G+AY+F++ +NV  G  E++ ++TG++ +A I+C NC   LGW Y +A++  QK+KEG +I+E   M+K+
Sbjct:   21 YSCAHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIHCENCKTTLGWKYEQAFESSQKYKEGKYIIELNHMIKD 115

[Close]

BLAST of CK932973 vs. ExPASy Swiss-Prot
Match: YPEL2_PONAB (Protein yippee-like 2 OS=Pongo abelii GN=YPEL2 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.378e-19
Identity = 41/95 (43.16%), Postives = 65/95 (68.42%), Query Frame = 2

Query:  110 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 394
            +SC +C   LA H +LISK+F+   G+AY+F++ +NV  G  E++ ++TG++ +A IYC NC   LGW Y  A++  QK+KEG +I+E   M+K+
Sbjct:   21 YSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIYCENCKTTLGWKYEHAFESSQKYKEGKYIIELAHMIKD 115

[Close]

BLAST of CK932973 vs. ExPASy Swiss-Prot
Match: YPEL2_MOUSE (Protein yippee-like 2 OS=Mus musculus GN=Ypel2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.378e-19
Identity = 41/95 (43.16%), Postives = 65/95 (68.42%), Query Frame = 2

Query:  110 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 394
            +SC +C   LA H +LISK+F+   G+AY+F++ +NV  G  E++ ++TG++ +A IYC NC   LGW Y  A++  QK+KEG +I+E   M+K+
Sbjct:   21 YSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIYCENCKTTLGWKYEHAFESSQKYKEGKYIIELAHMIKD 115

[Close]

BLAST of CK932973 vs. ExPASy Swiss-Prot
Match: YPEL2_HUMAN (Protein yippee-like 2 OS=Homo sapiens GN=YPEL2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.378e-19
Identity = 41/95 (43.16%), Postives = 65/95 (68.42%), Query Frame = 2

Query:  110 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 394
            +SC +C   LA H +LISK+F+   G+AY+F++ +NV  G  E++ ++TG++ +A IYC NC   LGW Y  A++  QK+KEG +I+E   M+K+
Sbjct:   21 YSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIYCENCKTTLGWKYEHAFESSQKYKEGKYIIELAHMIKD 115

[Close]

BLAST of CK932973 vs. ExPASy Swiss-Prot
Match: YPEL2_CERAE (Protein yippee-like 2 OS=Cercopithecus aethiops GN=YPEL2 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.378e-19
Identity = 41/95 (43.16%), Postives = 65/95 (68.42%), Query Frame = 2

Query:  110 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 394
            +SC +C   LA H +LISK+F+   G+AY+F++ +NV  G  E++ ++TG++ +A IYC NC   LGW Y  A++  QK+KEG +I+E   M+K+
Sbjct:   21 YSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIYCENCKTTLGWKYEHAFESSQKYKEGKYIIELAHMIKD 115

[Close]

BLAST of CK932973 vs. ExPASy Swiss-Prot
Match: YPEL2_BOVIN (Protein yippee-like 2 OS=Bos taurus GN=YPEL2 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.378e-19
Identity = 41/95 (43.16%), Postives = 65/95 (68.42%), Query Frame = 2

Query:  110 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 394
            +SC +C   LA H +LISK+F+   G+AY+F++ +NV  G  E++ ++TG++ +A IYC NC   LGW Y  A++  QK+KEG +I+E   M+K+
Sbjct:   21 YSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIYCENCKTTLGWKYEHAFESSQKYKEGKYIIELAHMIKD 115

The following BLAST results are available for this feature:

BLAST of CK932973 vs. ExPASy Swiss-Prot

BLAST of CK932973 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39


Match Name	E-value	Identity	Description
YPEL1_CERAE	6.187e-20	44.21	Protein yippee-like 1 OS=Cercopithecus aethiops GN...	[more]
YPEL3_MOUSE	1.055e-19	43.16	Protein yippee-like 3 OS=Mus musculus GN=Ypel3 PE=...	[more]
YPEL3_HUMAN	1.055e-19	43.16	Protein yippee-like 3 OS=Homo sapiens GN=YPEL3 PE=...	[more]
YPEL3_CERAE	1.055e-19	43.16	Protein yippee-like 3 OS=Cercopithecus aethiops GN...	[more]
YPEL3_BOVIN	1.055e-19	43.16	Protein yippee-like 3 OS=Bos taurus GN=YPEL3 PE=3 ...	[more]
YPEL2_PONAB	1.378e-19	43.16	Protein yippee-like 2 OS=Pongo abelii GN=YPEL2 PE=...	[more]
YPEL2_MOUSE	1.378e-19	43.16	Protein yippee-like 2 OS=Mus musculus GN=Ypel2 PE=...	[more]
YPEL2_HUMAN	1.378e-19	43.16	Protein yippee-like 2 OS=Homo sapiens GN=YPEL2 PE=...	[more]
YPEL2_CERAE	1.378e-19	43.16	Protein yippee-like 2 OS=Cercopithecus aethiops GN...	[more]
YPEL2_BOVIN	1.378e-19	43.16	Protein yippee-like 2 OS=Bos taurus GN=YPEL2 PE=3 ...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004349_C09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_C09 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK932973 ID=CK932973; Name=CK932973; organism=Citrus sinensis; type=EST; length=629bp
GGGCTCTTTAAATAACGCTCTCTTCTCCTCTCATCTGTTGTTGGTTCCAG
TCTTAAGCAGATCAGTTTTTGGTTTCAGTTAAATGGCAGAGTTCGATGGT
CGTCCCTTCTTCAGTTGCAGAAATTGTCTTAATCCACTTGCCTTTCACCA
TGATCTTATTTCCAAAACTTTTAAGGCACAAACAGGACAGGCCTACATGT
TTAGTAATGCAATGAATGTAGTTCTGGGAAGAAAGGAGGATAAGCAAATG
ATAACAGGCATTTACACAATTGCCAAAATCTATTGCAGCAATTGTGGGCA
GGAATTGGGTTGGCATTATTTGCGAGCTTATGATCTCAAACAAAAATGGA
AGGAAGGCAATTTCATTCTCGAGAAATTCAAGATGCTTAAAGAATACAAG
TAGCCCTCTATTTTATTGCAACAAAATAATGCCATCAAAGCAAGTTTTCA
AGTTCTATGCAAGTATGTATGTGTGTGTGTGCATCTTGGACTTGGAAGAA
AATTTGTGTACTCCATGCACTTCTTTCATTAGATGTATGCATATAATAAG
AGTTTATTGAAAGAGAGTGTATACATGAAGGGTAATCAAATTTTTCTCGT
AGAAAAAAAAAAAAAAAAAAAAAAAAAAA