CK932973

Overview
NameCK932973
Unique NameCK932973
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932973_ssr470 microsatellite CK932973_ssr470:470..481. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9684 contig Csv1_Contig9684:168..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932973 vs. ExPASy Swiss-Prot
Match: YIPL7_ARATH (Protein yippee-like At5g53940 OS=Arabidopsis thaliana GN=At5g53940 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.378e-19
Identity = 41/102 (40.20%), Postives = 71/102 (69.61%), Query Frame = 2
Query:   89 EFDGRPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 394
            E +GR +  CR C   LA   DL+S++F  + G+AY+F+ ++N+ +G  E++ M++G++T+A I+C  CGQ +GW Y  A++  QK+KEG F+LE+ +++ E
Sbjct:    8 ELEGRSY-RCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERLMLSGMHTVADIFCCCCGQNVGWKYESAHEKAQKYKEGKFVLERGRIVDE 108          
BLAST of CK932973 vs. ExPASy Swiss-Prot
Match: YIPL_ORYSJ (Putative yippee-like protein Os10g0369500 OS=Oryza sativa subsp. japonica GN=Os10g0369500 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.800e-19
Identity = 42/93 (45.16%), Postives = 63/93 (67.74%), Query Frame = 2
Query:  116 CRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 394
            CR C    A    ++S+ F+ + G+AY+F + +N+ LG  ED+ ++TG++T+  IYCS C Q LGW Y +AY+  +K+KEG FILEK +M KE
Sbjct:   25 CRRCRVDAASADAILSRDFRGRFGRAYLFDHVVNISLGPNEDRYLMTGLHTVKDIYCSCCQQILGWRYEKAYEESEKYKEGKFILEKARMWKE 117          
BLAST of CK932973 vs. ExPASy Swiss-Prot
Match: YIPL4_ARATH (Protein yippee-like At3g55890 OS=Arabidopsis thaliana GN=At3g55890 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.800e-19
Identity = 40/101 (39.60%), Postives = 67/101 (66.34%), Query Frame = 2
Query:   83 MAEFDGRPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKM 385
            M + +G   + C+ C   L+   D++SK+F+ + G+AY+F+N +NV +G KED+ MITG++ +  I+C  CG  +GW Y  A++  QK+KEG  +LE +K+
Sbjct:    6 MVDLEGN-IYICKLCKTHLSTDQDIMSKSFQCKNGRAYLFNNVVNVSVGEKEDRMMITGLHNVVDIFCVGCGSNVGWKYEFAHEKSQKYKEGKSVLELYKI 105          
BLAST of CK932973 vs. ExPASy Swiss-Prot
Match: YIPL_SOLTU (Protein yippee-like OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.934e-19
Identity = 39/92 (42.39%), Postives = 64/92 (69.57%), Query Frame = 2
Query:  110 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKM 385
            +SC++C   LA   +++SK+F  + G+AY+FS  +NV  G  E++ M+TG++T+A I+C  CG  +GW Y  A++  QK+KEG  +LE+FK+
Sbjct:   14 YSCKHCGTHLALSENIVSKSFHCKHGKAYLFSKVVNVTSGEIENRMMMTGMHTVADIFCVCCGSIVGWKYETAHEKSQKYKEGKSVLERFKI 105          
BLAST of CK932973 vs. ExPASy Swiss-Prot
Match: YPEL4_RAT (Protein yippee-like 4 OS=Rattus norvegicus GN=Ypel4 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.524e-18
Identity = 39/95 (41.05%), Postives = 66/95 (69.47%), Query Frame = 2
Query:  110 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 394
            +SC +C   LA H +LISK+F+   G+AY+F++ +NV  G  E + ++TG++++A I+C +C   LGW Y +A++  QK+KEG +I+E   M+K+
Sbjct:   29 YSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIFCESCKTTLGWKYEQAFETSQKYKEGKYIIEMSHMVKD 123          
BLAST of CK932973 vs. ExPASy Swiss-Prot
Match: YPEL4_MOUSE (Protein yippee-like 4 OS=Mus musculus GN=Ypel4 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.524e-18
Identity = 39/95 (41.05%), Postives = 66/95 (69.47%), Query Frame = 2
Query:  110 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 394
            +SC +C   LA H +LISK+F+   G+AY+F++ +NV  G  E + ++TG++++A I+C +C   LGW Y +A++  QK+KEG +I+E   M+K+
Sbjct:   29 YSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIFCESCKTTLGWKYEQAFETSQKYKEGKYIIEMSHMVKD 123          
BLAST of CK932973 vs. ExPASy Swiss-Prot
Match: YPEL4_HUMAN (Protein yippee-like 4 OS=Homo sapiens GN=YPEL4 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.524e-18
Identity = 39/95 (41.05%), Postives = 66/95 (69.47%), Query Frame = 2
Query:  110 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 394
            +SC +C   LA H +LISK+F+   G+AY+F++ +NV  G  E + ++TG++++A I+C +C   LGW Y +A++  QK+KEG +I+E   M+K+
Sbjct:   29 YSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIFCESCKTTLGWKYEQAFETSQKYKEGKYIIEMSHMVKD 123          
BLAST of CK932973 vs. ExPASy Swiss-Prot
Match: YPEL4_CERAE (Protein yippee-like 4 OS=Cercopithecus aethiops GN=YPEL4 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.524e-18
Identity = 39/95 (41.05%), Postives = 66/95 (69.47%), Query Frame = 2
Query:  110 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 394
            +SC +C   LA H +LISK+F+   G+AY+F++ +NV  G  E + ++TG++++A I+C +C   LGW Y +A++  QK+KEG +I+E   M+K+
Sbjct:   29 YSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIFCESCKTTLGWKYEQAFETSQKYKEGKYIIEMSHMVKD 123          
BLAST of CK932973 vs. ExPASy Swiss-Prot
Match: YPL1_CAEEL (Protein yippee-like F37A8.5 OS=Caenorhabditis elegans GN=F37A8.5 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.990e-18
Identity = 41/95 (43.16%), Postives = 63/95 (66.32%), Query Frame = 2
Query:  110 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 394
            +SC +C   LA H +LISK+F+   G+AY+F+  +NV  G  E++ ++TG++ +A IYC  C   LGW Y  A++  QK+KEG FI+E   M+K+
Sbjct:   34 YSCIHCRANLAAHAELISKSFQGSQGKAYLFNAVVNVGCGPAEERVLLTGLHAVADIYCEICKTTLGWKYEHAFESSQKYKEGKFIIELAHMVKD 128          
BLAST of CK932973 vs. ExPASy Swiss-Prot
Match: MOH1_YEAST (Protein yippee-like MOH1 OS=Saccharomyces cerevisiae GN=MOH1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.022e-14
Identity = 34/88 (38.64%), Postives = 57/88 (64.77%), Query Frame = 2
Query:  110 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILE 373
            + CR+C   L+    +IS+ ++ +TG AY+ +  +NVV G+ E ++M+TG Y +  I C  C + +GW YL++ +  Q++KEG FILE
Sbjct:   43 YGCRHCKTHLSSSFQIISRDYRGRTGTAYLMNKVVNVVEGKVEQRRMLTGDYLVCDILCHWCKRNVGWKYLQSSNDDQQYKEGKFILE 130          
The following BLAST results are available for this feature:
BLAST of CK932973 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
YIPL7_ARATH1.378e-1940.20Protein yippee-like At5g53940 OS=Arabidopsis thali... [more]
YIPL_ORYSJ1.800e-1945.16Putative yippee-like protein Os10g0369500 OS=Oryza... [more]
YIPL4_ARATH1.800e-1939.60Protein yippee-like At3g55890 OS=Arabidopsis thali... [more]
YIPL_SOLTU8.934e-1942.39Protein yippee-like OS=Solanum tuberosum PE=2 SV=1[more]
YPEL4_RAT1.524e-1841.05Protein yippee-like 4 OS=Rattus norvegicus GN=Ypel... [more]
YPEL4_MOUSE1.524e-1841.05Protein yippee-like 4 OS=Mus musculus GN=Ypel4 PE=... [more]
YPEL4_HUMAN1.524e-1841.05Protein yippee-like 4 OS=Homo sapiens GN=YPEL4 PE=... [more]
YPEL4_CERAE1.524e-1841.05Protein yippee-like 4 OS=Cercopithecus aethiops GN... [more]
YPL1_CAEEL1.990e-1843.16Protein yippee-like F37A8.5 OS=Caenorhabditis eleg... [more]
MOH1_YEAST1.022e-1438.64Protein yippee-like MOH1 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_C09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932973 ID=CK932973; Name=CK932973; organism=Citrus sinensis; type=EST; length=629bp
GGGCTCTTTAAATAACGCTCTCTTCTCCTCTCATCTGTTGTTGGTTCCAG
TCTTAAGCAGATCAGTTTTTGGTTTCAGTTAAATGGCAGAGTTCGATGGT
CGTCCCTTCTTCAGTTGCAGAAATTGTCTTAATCCACTTGCCTTTCACCA
TGATCTTATTTCCAAAACTTTTAAGGCACAAACAGGACAGGCCTACATGT
TTAGTAATGCAATGAATGTAGTTCTGGGAAGAAAGGAGGATAAGCAAATG
ATAACAGGCATTTACACAATTGCCAAAATCTATTGCAGCAATTGTGGGCA
GGAATTGGGTTGGCATTATTTGCGAGCTTATGATCTCAAACAAAAATGGA
AGGAAGGCAATTTCATTCTCGAGAAATTCAAGATGCTTAAAGAATACAAG
TAGCCCTCTATTTTATTGCAACAAAATAATGCCATCAAAGCAAGTTTTCA
AGTTCTATGCAAGTATGTATGTGTGTGTGTGCATCTTGGACTTGGAAGAA
AATTTGTGTACTCCATGCACTTCTTTCATTAGATGTATGCATATAATAAG
AGTTTATTGAAAGAGAGTGTATACATGAAGGGTAATCAAATTTTTCTCGT
AGAAAAAAAAAAAAAAAAAAAAAAAAAAA
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