CK932974

Overview
NameCK932974
Unique NameCK932974
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932974 vs. ExPASy Swiss-Prot
Match: GLH4_CAEEL (ATP-dependent RNA helicase glh-4 OS=Caenorhabditis elegans GN=glh-4 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.771e-14
Identity = 41/112 (36.61%), Postives = 53/112 (47.32%), Query Frame = 3
Query:  315 CNNCGLPGHIASEC----TTQARCWNCREPGHMASNCHN----EGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKA-------CKNCRKTGHIARDC 605
            C+NCG  GHI+ EC      +  C NC + GH AS+C       G C +CG  GH A DC       G    C NC + GH A DC N++        C+ C + GH   +C
Sbjct:  572 CHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDCDQPKVPRGP---CRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYEC 680          

HSP 2 Score: 72.4034 bits (176), Expect = 1.986e-12
Identity = 37/109 (33.94%), Postives = 48/109 (44.04%), Query Frame = 3
Query:  258 CNNCKRPGHFARECPNVAV----CNNCGLPGHIASEC----TTQARCWNCREPGHMASNCHN----EGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC 548
            C+NC   GH ++EC    V    C NC   GH AS+C      +  C NC   GH A +C       G C +CG+ GH A+DC            C  C + GH   +C
Sbjct:  572 CHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYEC 680          

HSP 3 Score: 68.5514 bits (166), Expect = 2.867e-11
Identity = 32/88 (36.36%), Postives = 43/88 (48.86%), Query Frame = 3
Query:  258 CNNCKRPGHFARECPNVAV----CNNCGLPGHIASEC----TTQARCWNCREPGHMASNCHNEGI-------CHSCGKTGHRARDCST 476
            C NC++ GHFA +C    V    C NCG+ GH A +C      +  C NC + GH A +C NE +       C  C + GH   +C T
Sbjct:  595 CRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYECPT 682          
BLAST of CK932974 vs. ExPASy Swiss-Prot
Match: ZCH13_HUMAN (Zinc finger CCHC domain-containing protein 13 OS=Homo sapiens GN=ZCCHC13 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.173e-14
Identity = 44/119 (36.97%), Postives = 58/119 (48.74%), Query Frame = 3
Query:  267 CKRPGHFARECPNVAVCNNCGLPGHIASEC---TTQARCWNCREPGHMASNCHNEG-ICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKA--CKNCRKTGHIARDC 605
            C   GH+AR CP        G      S+C   T    C+ C E G  A NC   G IC++CG++GH A+DC    +     + C  C + GH+A DC   K   C +C K GHI +DC
Sbjct:    9 CGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVLLGNICYNCGRSGHIAKDCKDPKRERR--QHCYTCGRLGHLARDCDRQKEQKCYSCGKLGHIQKDC 125          

HSP 2 Score: 69.3218 bits (168), Expect = 1.681e-11
Identity = 37/106 (34.91%), Postives = 51/106 (48.11%), Query Frame = 3
Query:  258 CNNCKRPGHFARECPNVA-VCNNCGLPGHIASECTTQAR-----CWNCREPGHMASNC--HNEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCT 551
            C  C   G  A+ C  +  +C NCG  GHIA +C    R     C+ C   GH+A +C    E  C+SCGK GH  +DC+           C  C + GH+A +C+
Sbjct:   47 CYCCGESGRNAKNCVLLGNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCYSCGKLGHIQKDCAQVK--------CYRCGEIGHVAINCS 144          

HSP 3 Score: 68.5514 bits (166), Expect = 2.867e-11
Identity = 34/98 (34.69%), Postives = 51/98 (52.04%), Query Frame = 3
Query:  201 YCDPPLRRETRRSFSQGNLCNNCKRPGHFARECPNV-----AVCNNCGLPGHIASECTTQ--ARCWNCREPGHMASNCHNEGICHSCGKTGHRARDCS 473
            YC     R  +     GN+C NC R GH A++C +        C  CG  GH+A +C  Q   +C++C + GH+  +C  +  C+ CG+ GH A +CS
Sbjct:   48 YCCGESGRNAKNCVLLGNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCYSCGKLGHIQKDC-AQVKCYRCGEIGHVAINCS 144          
BLAST of CK932974 vs. ExPASy Swiss-Prot
Match: ZCHC7_XENLA (Zinc finger CCHC domain-containing protein 7 OS=Xenopus laevis GN=zcchc7 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.745e-11
Identity = 41/137 (29.93%), Postives = 55/137 (40.15%), Query Frame = 3
Query:  213 PLRRETRRSFSQGNLCNNCKRPGHFARECP---NVAVCNNCGLPGHIASECTTQARCWNCREPGHMASNCHNEG----ICHSCGKTGHRARDC-------STHVQSG-----------GDLRLCNNCYKPGHIAADC 548
            PLRR  R    +  +C NC + GH ++ CP    +  C  CG  GH  + C ++  C NC  PGH    C         CH C   GH A  C          +++G            D+  C NC K GH   +C
Sbjct:  252 PLRRSNRYYTDKNVVCRNCDKRGHLSKNCPVPKKLPACCLCGERGHYQNSCPSR-YCLNCFLPGHFFKECIERAYWRKTCHRCSMPGHYADACPEIWRQYHLTIKAGPIKKPKSHSGQKDIVYCCNCAKKGHCIYEC 387          
BLAST of CK932974 vs. ExPASy Swiss-Prot
Match: AIR1_SCHPO (Protein air1 OS=Schizosaccharomyces pombe GN=air1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.343e-11
Identity = 36/121 (29.75%), Postives = 56/121 (46.28%), Query Frame = 3
Query:  243 SQGNLCNNCKRPGHFARECPNVAVCNNCG-LPGHIASECTTQARCWNCREPGHMASNC-----HNEGICHSCGKTGHRARDCST----HVQSGGDLRL--------CNNCYKPGHIAADCT 551
            S+  +C+NCK  GH +++CP+V +C  CG +  HI+  C    +C NC   GH+A+ C         +C +C    H +  C      +V+    +R+        C NC    H   DCT
Sbjct:   84 SESIVCHNCKGNGHISKDCPHV-LCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSEPRKRGPRVCRTCHTDTHTSSTCPLIWRYYVEKEHPVRIDVSEVRKFCYNCASDEHFGDDCT 203          
The following BLAST results are available for this feature:
BLAST of CK932974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
GLH4_CAEEL2.771e-1436.61ATP-dependent RNA helicase glh-4 OS=Caenorhabditis... [more]
ZCH13_HUMAN6.173e-1436.97Zinc finger CCHC domain-containing protein 13 OS=H... [more]
ZCHC7_XENLA3.745e-1129.93Zinc finger CCHC domain-containing protein 7 OS=Xe... [more]
AIR1_SCHPO8.343e-1129.75Protein air1 OS=Schizosaccharomyces pombe GN=air1 ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_C10 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932974 ID=CK932974; Name=CK932974; organism=Citrus sinensis; type=EST; length=605bp
GGGGATAGCATCCGCCCTTTTTCNNCTCTAGCAAAGGAAAGCTGTGTTGT
GGGGGTGGTGTATTTGTGGATCTGTGGTGTTTTACGTGATTAATAGGAGA
TTTAAACATGAGTTCACGCAGCAGGAGCATTAGCAGGAGCCGGAGTCGGA
GTCGAAGTAGGAGTCCACGAGATCGCAGGTTCCGATCTCGACACTCTTCC
TATTGCGACCCTCCTTTAAGGAGAGAAACACGTCGCAGTTTCAGCCAAGG
CAATCTGTGCAACAACTGCAAGCGGCCTGGTCATTTTGCAAGAGAGTGCC
CTAATGTTGCTGTTTGTAACAACTGTGGTCTTCCTGGGCACATCGCATCA
GAATGCACCACGCAGGCACGATGCTGGAATTGTCGAGAACCTGGACATAT
GGCAAGCAACTGTCACAACGAGGGCATCTGCCACTCTTGTGGCAAAACTG
GACATCGTGCTAGAGACTGCTCGACTCATGTGCAGTCAGGGGGGGACTTG
AGACTCTGCAACAATTGCTACAAGCCGGGGCACATTGCAGCAGACTGTAC
CAATGACAAAGCATGCAAGAATTGCCGGAAAACAGGCCACATAGCACGCG
ATTGT
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