CK932974
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK932974 vs. ExPASy Swiss-Prot
Match: GLH4_CAEEL (ATP-dependent RNA helicase glh-4 OS=Caenorhabditis elegans GN=glh-4 PE=1 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 2.771e-14 Identity = 41/112 (36.61%), Postives = 53/112 (47.32%), Query Frame = 3 Query: 315 CNNCGLPGHIASEC----TTQARCWNCREPGHMASNCHN----EGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKA-------CKNCRKTGHIARDC 605 C+NCG GHI+ EC + C NC + GH AS+C G C +CG GH A DC G C NC + GH A DC N++ C+ C + GH +C Sbjct: 572 CHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDCDQPKVPRGP---CRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYEC 680 HSP 2 Score: 72.4034 bits (176), Expect = 1.986e-12 Identity = 37/109 (33.94%), Postives = 48/109 (44.04%), Query Frame = 3 Query: 258 CNNCKRPGHFARECPNVAV----CNNCGLPGHIASEC----TTQARCWNCREPGHMASNCHN----EGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC 548 C+NC GH ++EC V C NC GH AS+C + C NC GH A +C G C +CG+ GH A+DC C C + GH +C Sbjct: 572 CHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYEC 680 HSP 3 Score: 68.5514 bits (166), Expect = 2.867e-11 Identity = 32/88 (36.36%), Postives = 43/88 (48.86%), Query Frame = 3 Query: 258 CNNCKRPGHFARECPNVAV----CNNCGLPGHIASEC----TTQARCWNCREPGHMASNCHNEGI-------CHSCGKTGHRARDCST 476 C NC++ GHFA +C V C NCG+ GH A +C + C NC + GH A +C NE + C C + GH +C T Sbjct: 595 CRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYECPT 682
BLAST of CK932974 vs. ExPASy Swiss-Prot
Match: ZCH13_HUMAN (Zinc finger CCHC domain-containing protein 13 OS=Homo sapiens GN=ZCCHC13 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 6.173e-14 Identity = 44/119 (36.97%), Postives = 58/119 (48.74%), Query Frame = 3 Query: 267 CKRPGHFARECPNVAVCNNCGLPGHIASEC---TTQARCWNCREPGHMASNCHNEG-ICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKA--CKNCRKTGHIARDC 605 C GH+AR CP G S+C T C+ C E G A NC G IC++CG++GH A+DC + + C C + GH+A DC K C +C K GHI +DC Sbjct: 9 CGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVLLGNICYNCGRSGHIAKDCKDPKRERR--QHCYTCGRLGHLARDCDRQKEQKCYSCGKLGHIQKDC 125 HSP 2 Score: 69.3218 bits (168), Expect = 1.681e-11 Identity = 37/106 (34.91%), Postives = 51/106 (48.11%), Query Frame = 3 Query: 258 CNNCKRPGHFARECPNVA-VCNNCGLPGHIASECTTQAR-----CWNCREPGHMASNC--HNEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCT 551 C C G A+ C + +C NCG GHIA +C R C+ C GH+A +C E C+SCGK GH +DC+ C C + GH+A +C+ Sbjct: 47 CYCCGESGRNAKNCVLLGNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCYSCGKLGHIQKDCAQVK--------CYRCGEIGHVAINCS 144 HSP 3 Score: 68.5514 bits (166), Expect = 2.867e-11 Identity = 34/98 (34.69%), Postives = 51/98 (52.04%), Query Frame = 3 Query: 201 YCDPPLRRETRRSFSQGNLCNNCKRPGHFARECPNV-----AVCNNCGLPGHIASECTTQ--ARCWNCREPGHMASNCHNEGICHSCGKTGHRARDCS 473 YC R + GN+C NC R GH A++C + C CG GH+A +C Q +C++C + GH+ +C + C+ CG+ GH A +CS Sbjct: 48 YCCGESGRNAKNCVLLGNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCYSCGKLGHIQKDC-AQVKCYRCGEIGHVAINCS 144
BLAST of CK932974 vs. ExPASy Swiss-Prot
Match: ZCHC7_XENLA (Zinc finger CCHC domain-containing protein 7 OS=Xenopus laevis GN=zcchc7 PE=2 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 3.745e-11 Identity = 41/137 (29.93%), Postives = 55/137 (40.15%), Query Frame = 3 Query: 213 PLRRETRRSFSQGNLCNNCKRPGHFARECP---NVAVCNNCGLPGHIASECTTQARCWNCREPGHMASNCHNEG----ICHSCGKTGHRARDC-------STHVQSG-----------GDLRLCNNCYKPGHIAADC 548 PLRR R + +C NC + GH ++ CP + C CG GH + C ++ C NC PGH C CH C GH A C +++G D+ C NC K GH +C Sbjct: 252 PLRRSNRYYTDKNVVCRNCDKRGHLSKNCPVPKKLPACCLCGERGHYQNSCPSR-YCLNCFLPGHFFKECIERAYWRKTCHRCSMPGHYADACPEIWRQYHLTIKAGPIKKPKSHSGQKDIVYCCNCAKKGHCIYEC 387
BLAST of CK932974 vs. ExPASy Swiss-Prot
Match: AIR1_SCHPO (Protein air1 OS=Schizosaccharomyces pombe GN=air1 PE=1 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 8.343e-11 Identity = 36/121 (29.75%), Postives = 56/121 (46.28%), Query Frame = 3 Query: 243 SQGNLCNNCKRPGHFARECPNVAVCNNCG-LPGHIASECTTQARCWNCREPGHMASNC-----HNEGICHSCGKTGHRARDCST----HVQSGGDLRL--------CNNCYKPGHIAADCT 551 S+ +C+NCK GH +++CP+V +C CG + HI+ C +C NC GH+A+ C +C +C H + C +V+ +R+ C NC H DCT Sbjct: 84 SESIVCHNCKGNGHISKDCPHV-LCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSEPRKRGPRVCRTCHTDTHTSSTCPLIWRYYVEKEHPVRIDVSEVRKFCYNCASDEHFGDDCT 203 The following BLAST results are available for this feature:
BLAST of CK932974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >CK932974 ID=CK932974; Name=CK932974; organism=Citrus sinensis; type=EST; length=605bpback to top |