CK932976

Overview
NameCK932976
Unique NameCK932976
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig888 contig Csv1_Contig888:59..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932976 vs. ExPASy Swiss-Prot
Match: RS11_THEVO (30S ribosomal protein S11P OS=Thermoplasma volcanium GN=rps11p PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 7.324e-26
Identity = 63/112 (56.25%), Postives = 79/112 (70.54%), Query Frame = 2
Query:  107 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 442
            G+AHI+AS N+T IHVTD +G ET+  ++GGM VK DRD++SPYAAM AA  VS   KE  IT L IK+RA            AQ+A+RAL+R+G+KI RIE+VTPIP D T
Sbjct:   10 GIAHIYASQNNTIIHVTDPTGAETIAMVSGGMVVKNDRDQASPYAAMKAADMVSETLKEHEITDLIIKVRAPGGNKSKIPGPGAQAAIRALSRAGLKIVRIEEVTPIPHDGT 121          
BLAST of CK932976 vs. ExPASy Swiss-Prot
Match: RS11_SULTO (30S ribosomal protein S11P OS=Sulfolobus tokodaii GN=rps11p PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 7.324e-26
Identity = 60/112 (53.57%), Postives = 79/112 (70.54%), Query Frame = 2
Query:  104 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 439
            +G+A ++AS N+T I +TD++G E + R +GGM VKADR++ SPYAAMLAA   +T   + GI+A+HIK+RA            AQ A+RALAR+G  IGRIEDVTPIP DS
Sbjct:    9 WGIARVYASQNNTLITITDITGAEIISRASGGMVVKADREKPSPYAAMLAANKAATEAFDKGISAIHIKVRAQGGYGSKTPGPGAQPAIRALARAGFIIGRIEDVTPIPHDS 120          
BLAST of CK932976 vs. ExPASy Swiss-Prot
Match: RS11_METBU (30S ribosomal protein S11P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps11p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.324e-26
Identity = 59/114 (51.75%), Postives = 79/114 (69.30%), Query Frame = 2
Query:  101 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 442
            ++GVAHI  SFN+T I VTDL+G ET+ + +GGM VKA RDESSPY AM  A  ++   ++ G+  +HIK+RA            AQ+A+RA AR+G++IGRIEDVTP+P D T
Sbjct:    5 IWGVAHIKCSFNNTIITVTDLTGAETIAKSSGGMVVKAARDESSPYTAMQMATQLADILRDKGLEGVHIKVRAPGGNKQRSPGPGAQAAIRAFARAGVRIGRIEDVTPVPHDGT 118          
BLAST of CK932976 vs. ExPASy Swiss-Prot
Match: RS11_CENSY (30S ribosomal protein S11P OS=Cenarchaeum symbiosum GN=rps11p PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 9.565e-26
Identity = 59/122 (48.36%), Postives = 79/122 (64.75%), Query Frame = 2
Query:   77 PAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 442
            P     +   G+AHI++S+N+T IH+TDL+G ET+   +GG+ V ADR ESSP+AAM AA  V    +  G T  HI++RA            AQ+A+RALAR G +IGRI+DVTPIP D+T
Sbjct:   66 PETTPADEKLGIAHIYSSYNNTIIHMTDLTGAETVSISSGGVHVNADRYESSPFAAMKAANKVIESARAKGFTGFHIRVRAVGGVGSRVPGPGAQAAIRALARGGFRIGRIDDVTPIPHDTT 187          
BLAST of CK932976 vs. ExPASy Swiss-Prot
Match: RS11_METAC (30S ribosomal protein S11P OS=Methanosarcina acetivorans GN=rps11p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.632e-25
Identity = 58/113 (51.33%), Postives = 79/113 (69.91%), Query Frame = 2
Query:  104 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 442
            + VAHI +SFN+T I VTD++G ET+ + +GGM VKA RDESSPY AM  A  ++ + K+ GI  +HI++RA            AQ+A+RA AR+G++IGRIEDVTP+P D T
Sbjct:    6 WAVAHIKSSFNNTIITVTDITGAETIAKSSGGMVVKAARDESSPYTAMQMAGQLADQLKDKGINGIHIRVRAPGGNKQRSPGPGAQAAIRAFARAGIRIGRIEDVTPVPHDGT 118          
BLAST of CK932976 vs. ExPASy Swiss-Prot
Match: RS11_NATPD (30S ribosomal protein S11P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps11p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.131e-25
Identity = 56/113 (49.56%), Postives = 81/113 (71.68%), Query Frame = 2
Query:  104 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 442
            +G+A+++ASFN+T I VTD++G ET+V+ +GG  VK +RDE+SPYAAM  A+ V+   K+ GI  +H+++R             AQ+ +RALAR+G++IGRIEDVTPIP D T
Sbjct:    7 WGIANVYASFNNTIITVTDMTGAETIVKSSGGTVVKQNRDEASPYAAMQMAEVVAEDVKDAGIDGVHVRVRGPGGNQQQNPGPGAQATIRALARAGLEIGRIEDVTPIPHDGT 119          
BLAST of CK932976 vs. ExPASy Swiss-Prot
Match: RS11_METMA (30S ribosomal protein S11P OS=Methanosarcina mazei GN=rps11p PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.635e-25
Identity = 57/113 (50.44%), Postives = 79/113 (69.91%), Query Frame = 2
Query:  104 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 442
            + VAHI +SFN+T I VTD++G ET+ + +GGM VKA RDESSPY AM  A  ++ + ++ GI  +HI++RA            AQ+A+RA AR+G++IGRIEDVTP+P D T
Sbjct:    6 WAVAHIKSSFNNTIITVTDITGAETIAKSSGGMVVKAARDESSPYTAMQMAGQLADQLRDKGINGIHIRVRAPGGNKQRSPGPGAQAAIRAFARAGIRIGRIEDVTPVPHDGT 118          
BLAST of CK932976 vs. ExPASy Swiss-Prot
Match: RS11_METBF (30S ribosomal protein S11P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps11p PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.200e-25
Identity = 57/113 (50.44%), Postives = 79/113 (69.91%), Query Frame = 2
Query:  104 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 442
            + VAHI +SFN+T I VTD++G ET+ + +GGM VKA RDESSPY AM  A  ++ + ++ GI  +HI++RA            AQ+A+RA AR+G++IGRIEDVTP+P D T
Sbjct:    6 WAVAHIKSSFNNTIITVTDITGAETIAKSSGGMVVKAARDESSPYTAMQMAGQLADQLRDKGIHGIHIRVRAPGGNKQRSPGPGAQAAIRAFARAGIRIGRIEDVTPVPHDGT 118          
BLAST of CK932976 vs. ExPASy Swiss-Prot
Match: RS11_CALMQ (30S ribosomal protein S11P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps11p PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.200e-25
Identity = 58/112 (51.79%), Postives = 78/112 (69.64%), Query Frame = 2
Query:  104 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 439
            +G+A+I+AS N+T I +TDL+G ET+ R++GG  VKADRD+ SPYAAM+AA   +      GI A+H+K+R             A +A+RALAR+GM IGRIEDVTPIP D+
Sbjct:    9 WGIAYIYASSNNTMIIITDLTGSETVARVSGGQVVKADRDKPSPYAAMMAAYKAAQIAMARGINAVHVKVRGPGGYGLKVPGPGAVAAIRALARAGMIIGRIEDVTPIPHDT 120          
BLAST of CK932976 vs. ExPASy Swiss-Prot
Match: RS11_PICTO (30S ribosomal protein S11P OS=Picrophilus torridus GN=rps11p PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.804e-24
Identity = 62/112 (55.36%), Postives = 78/112 (69.64%), Query Frame = 2
Query:  107 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 442
            G+AHI+AS N+T I VTD +G ET+ + +GGM VK DRDE+SPYAAM AA  VS + +E  IT L I++RA            AQSA+RAL+R+G KI RIE+VTPIP D T
Sbjct:    5 GIAHIYASQNNTIILVTDPTGAETIAKSSGGMVVKNDRDEASPYAAMRAADMVSEKLREREITDLIIRVRAPGGSKSKIPGPGAQSAIRALSRAGFKILRIEEVTPIPHDGT 116          
The following BLAST results are available for this feature:
BLAST of CK932976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
RS11_THEVO7.324e-2656.2530S ribosomal protein S11P OS=Thermoplasma volcani... [more]
RS11_SULTO7.324e-2653.5730S ribosomal protein S11P OS=Sulfolobus tokodaii ... [more]
RS11_METBU7.324e-2651.7530S ribosomal protein S11P OS=Methanococcoides bur... [more]
RS11_CENSY9.565e-2648.3630S ribosomal protein S11P OS=Cenarchaeum symbiosu... [more]
RS11_METAC1.632e-2551.3330S ribosomal protein S11P OS=Methanosarcina aceti... [more]
RS11_NATPD2.131e-2549.5630S ribosomal protein S11P OS=Natronomonas pharaon... [more]
RS11_METMA3.635e-2550.4430S ribosomal protein S11P OS=Methanosarcina mazei... [more]
RS11_METBF6.200e-2550.4430S ribosomal protein S11P OS=Methanosarcina barke... [more]
RS11_CALMQ6.200e-2551.7930S ribosomal protein S11P OS=Caldivirga maquiling... [more]
RS11_PICTO1.804e-2455.3630S ribosomal protein S11P OS=Picrophilus torridus... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_D01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932976 ID=CK932976; Name=CK932976; organism=Citrus sinensis; type=EST; length=717bp
GGGTCCATCTCGTGTCTTCGCAGGCATGTCGAGGAGAAAGAATAGGGAGC
CTAAGGAAGAGAATGTGACTCTAGGACCTGCTGTGAGAGATGGGGAGCAT
GTTTTTGGAGTTGCCCACATCTTTGCATCGTTCAATGATACATTTATTCA
TGTGACTGATCTGTCAGGCAGAGAAACCCTTGTCCGTATCACTGGTGGTA
TGAAGGTGAAAGCTGACCGAGATGAGTCCTCTCCATACGCTGCCATGCTT
GCAGCACAAGATGTTTCAACCAGATGCAAGGAGCTTGGAATCACTGCTCT
TCATATTAAGCTGCGTGCTACTGGTGGGAACAAAACCAAAACACCTGGTC
CAGGTGCCCAGTCTGCTCTTCGTGCCCTTGCTCGTTCTGGGATGAAAATT
GGTCGCATAGAGGATGTGACCCCTATTCCCACTGATAGCACACGCAGAAA
GGGTGGTAGAAGAGGAAGAAGGCTTTAAGCTGTGTTGTTTGTCCGATTGT
CTTGTTTTATGCGGGCATTCTGAATGGGACAGTTGTTCCTTAAAGTTAGT
TGAAGTTACTTTTCAATTTTGGAACTAATTTATAGTTTTATCTGTCGCTA
TTAAAAGATTTTATTTTCCTGCTTTTTGTAAAAACAATAGGCGGCCTTGA
GAGCATATGGCATTACTGGTGTCTTGCATTGCGTGTTGAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
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