CK932976

Overview
NameCK932976
Unique NameCK932976
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig888 contig Csv1_Contig888:59..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932976 vs. ExPASy Swiss-Prot
Match: RS11_METS3 (30S ribosomal protein S11P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps11p PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.356e-24
Identity = 54/113 (47.79%), Postives = 80/113 (70.80%), Query Frame = 2
Query:  104 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 442
            +G+A+I++S+N+T I VTD++G ET+ + +GG  V+ADR ++SP+AAM AA  ++   KE G   LHI++RA            AQ+ +RALAR+G+KIG+IED+TPIP D T
Sbjct:    7 WGIANIYSSYNNTIITVTDITGAETISQWSGGKVVRADRQQASPFAAMAAATRIADDAKEKGFVGLHIRVRAPGGNGHRSPGPGAQATIRALARAGIKIGKIEDITPIPHDGT 119          
BLAST of CK932976 vs. ExPASy Swiss-Prot
Match: RS11_HALSA (30S ribosomal protein S11P OS=Halobacterium salinarium GN=rps11p PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.356e-24
Identity = 55/113 (48.67%), Postives = 78/113 (69.03%), Query Frame = 2
Query:  104 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 442
            +G+AH+ ASFN+T + VTD +G ETL + +GG  VK +RDE+SPYAAM  A+ ++    + GI  +H+++R             AQ+A+RALAR+G++IGRIEDVTPIP D T
Sbjct:    7 WGIAHVHASFNNTIMTVTDQTGAETLAKSSGGSVVKQNRDEASPYAAMQMAEQLAEEVLDQGIEKVHVRVRGPGGNLQRSPGPGAQAAIRALARAGLEIGRIEDVTPIPHDGT 119          
BLAST of CK932976 vs. ExPASy Swiss-Prot
Match: RS11_METS5 (30S ribosomal protein S11P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps11p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.077e-24
Identity = 57/112 (50.89%), Postives = 78/112 (69.64%), Query Frame = 2
Query:  104 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 439
            +G+A I+AS N+T I +TD++G E + + +GGM VKADR++ SPYAAMLAA   ++   + G+ A+HIK+RA            AQ A+R+LARSG  IGRIEDVTPIP D+
Sbjct:    9 WGLARIYASQNNTIITITDITGAEVISKASGGMMVKADREKPSPYAAMLAANKAASDALDKGLMAIHIKVRAPGGAGPKTPGPGAQPAIRSLARSGFIIGRIEDVTPIPHDT 120          
BLAST of CK932976 vs. ExPASy Swiss-Prot
Match: RS11_HALMA (30S ribosomal protein S11P OS=Haloarcula marismortui GN=rps11p PE=1 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 1.169e-23
Identity = 53/116 (45.69%), Postives = 78/116 (67.24%), Query Frame = 2
Query:   95 EHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 442
            E ++G+AH+ ASFN+T I +TD +G ETL + +GG  VK +RDE+SPYAAM  A+ V+ +  + G+  + +++R             AQ+ +RALAR+G++IGRIEDVTP P D T
Sbjct:    6 EDIWGIAHVHASFNNTIITITDQTGAETLAKSSGGTVVKQNRDEASPYAAMQMAEVVAEKALDRGVEGVDVRVRGPGGNLQTSPGPGAQATIRALARAGLEIGRIEDVTPTPHDGT 121          
BLAST of CK932976 vs. ExPASy Swiss-Prot
Match: RS11_SULAC (30S ribosomal protein S11P OS=Sulfolobus acidocaldarius GN=rps11p PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.527e-23
Identity = 57/112 (50.89%), Postives = 77/112 (68.75%), Query Frame = 2
Query:  104 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 439
            +G A I+AS N+T I +TD++G E + + +GGM VKADR++ SPYAAMLAA   +    + GI+A+HIK+RA            AQ A+RALAR+G  IGRIEDVTP+P D+
Sbjct:    9 WGNARIYASQNNTIITITDITGAEIISKASGGMVVKADREKPSPYAAMLAANKAANDAFDKGISAIHIKVRAQGGYGSKTPGPGAQPAIRALARAGFIIGRIEDVTPLPHDT 120          
BLAST of CK932976 vs. ExPASy Swiss-Prot
Match: RS11_PYRCJ (30S ribosomal protein S11P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps11p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.527e-23
Identity = 56/112 (50.00%), Postives = 77/112 (68.75%), Query Frame = 2
Query:  104 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 439
            +G+A I++S N+T I +TDL+G ET+ R++GGM V+AD+D+ SP+AAM AA   +      GI A+HIK+R             A +A+RALARSG+ IGRIEDVTPIP D+
Sbjct:   18 WGIAWIYSSSNNTIITITDLTGAETVARVSGGMVVRADKDKPSPWAAMQAAYKAAQLALARGINAVHIKVRGPGGYGMKVPGPGASAAIRALARSGLVIGRIEDVTPIPHDT 129          
BLAST of CK932976 vs. ExPASy Swiss-Prot
Match: RS14_PIG (40S ribosomal protein S14 (Fragment) OS=Sus scrofa GN=RPS14 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.994e-23
Identity = 55/78 (70.51%), Postives = 64/78 (82.05%), Query Frame = 2
Query:   35 RKNREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV 265
            RK +E KEE V +LGP V +GE+VFGV HIFAS NDTF+HVTDLSG E++ R+TGGMK+KADR E SPY AMLAAQ V
Sbjct:    2 RKGKEKKEEQVISLGPQVAEGENVFGVCHIFASPNDTFVHVTDLSGXESICRVTGGMKMKADRXEXSPYXAMLAAQAV 79          
BLAST of CK932976 vs. ExPASy Swiss-Prot
Match: RS11_PYRIL (30S ribosomal protein S11P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps11p PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.994e-23
Identity = 56/112 (50.00%), Postives = 77/112 (68.75%), Query Frame = 2
Query:  104 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 439
            +G+A I++S N+T I +TDL+G ET+ R++GGM V+AD+D+ SP+AAM AA   +      GI A+HIK+R             A +A+RALARSG+ IGRIEDVTPIP D+
Sbjct:   16 WGIAWIYSSSNNTIITITDLTGAETVARVSGGMVVRADKDKPSPWAAMQAAYKAAQLALARGINAVHIKVRGPGGYGMKVPGPGASAAIRALARSGLIIGRIEDVTPIPHDT 127          
BLAST of CK932976 vs. ExPASy Swiss-Prot
Match: RS11_THEPD (30S ribosomal protein S11P OS=Thermofilum pendens (strain Hrk 5) GN=rps11p PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.605e-23
Identity = 54/111 (48.65%), Postives = 74/111 (66.67%), Query Frame = 2
Query:  107 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 439
            G+A I+AS+N+T IH+TDLSG ET+   +GGM  KADRD+ SP+AAM AA   +    + GI  +H+K++A            A  A+RAL R+G+ + RIEDVTP+PTDS
Sbjct:   34 GIAWIYASYNNTIIHITDLSGAETIAFASGGMVAKADRDKPSPWAAMQAAARAAKIALDKGIRVVHVKIKAPGGYGPKTPGPGAGPAIRALVRAGLMVDRIEDVTPLPTDS 144          
BLAST of CK932976 vs. ExPASy Swiss-Prot
Match: RS11_KORCO (30S ribosomal protein S11P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps11p PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.443e-23
Identity = 55/110 (50.00%), Postives = 73/110 (66.36%), Query Frame = 2
Query:  107 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTD 436
            GVAHI++SFNDT +H+TD++G ETL R +GGM V ADR E SPYAA+ AA   +   +  GIT L +K+RA            A +A+R L+RS + + R+EDVTPIP D
Sbjct:   10 GVAHIYSSFNDTIVHITDITGAETLARYSGGMFVDADRLEGSPYAALKAAMAAAKEAQRKGITHLIVKVRAPGGIKSRIPGPGATAAIRGLSRSQLTLIRVEDVTPIPHD 119          
The following BLAST results are available for this feature:
BLAST of CK932976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
RS11_METS32.356e-2447.7930S ribosomal protein S11P OS=Methanobrevibacter s... [more]
RS11_HALSA2.356e-2448.6730S ribosomal protein S11P OS=Halobacterium salina... [more]
RS11_METS53.077e-2450.8930S ribosomal protein S11P OS=Metallosphaera sedul... [more]
RS11_HALMA1.169e-2345.6930S ribosomal protein S11P OS=Haloarcula marismort... [more]
RS11_SULAC1.527e-2350.8930S ribosomal protein S11P OS=Sulfolobus acidocald... [more]
RS11_PYRCJ1.527e-2350.0030S ribosomal protein S11P OS=Pyrobaculum calidifo... [more]
RS14_PIG1.994e-2370.5140S ribosomal protein S14 (Fragment) OS=Sus scrofa... [more]
RS11_PYRIL1.994e-2350.0030S ribosomal protein S11P OS=Pyrobaculum islandic... [more]
RS11_THEPD2.605e-2348.6530S ribosomal protein S11P OS=Thermofilum pendens ... [more]
RS11_KORCO4.443e-2350.0030S ribosomal protein S11P OS=Korarchaeum cryptofi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_D01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932976 ID=CK932976; Name=CK932976; organism=Citrus sinensis; type=EST; length=717bp
GGGTCCATCTCGTGTCTTCGCAGGCATGTCGAGGAGAAAGAATAGGGAGC
CTAAGGAAGAGAATGTGACTCTAGGACCTGCTGTGAGAGATGGGGAGCAT
GTTTTTGGAGTTGCCCACATCTTTGCATCGTTCAATGATACATTTATTCA
TGTGACTGATCTGTCAGGCAGAGAAACCCTTGTCCGTATCACTGGTGGTA
TGAAGGTGAAAGCTGACCGAGATGAGTCCTCTCCATACGCTGCCATGCTT
GCAGCACAAGATGTTTCAACCAGATGCAAGGAGCTTGGAATCACTGCTCT
TCATATTAAGCTGCGTGCTACTGGTGGGAACAAAACCAAAACACCTGGTC
CAGGTGCCCAGTCTGCTCTTCGTGCCCTTGCTCGTTCTGGGATGAAAATT
GGTCGCATAGAGGATGTGACCCCTATTCCCACTGATAGCACACGCAGAAA
GGGTGGTAGAAGAGGAAGAAGGCTTTAAGCTGTGTTGTTTGTCCGATTGT
CTTGTTTTATGCGGGCATTCTGAATGGGACAGTTGTTCCTTAAAGTTAGT
TGAAGTTACTTTTCAATTTTGGAACTAATTTATAGTTTTATCTGTCGCTA
TTAAAAGATTTTATTTTCCTGCTTTTTGTAAAAACAATAGGCGGCCTTGA
GAGCATATGGCATTACTGGTGTCTTGCATTGCGTGTTGAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
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