CK932977

Overview
NameCK932977
Unique NameCK932977
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932977 vs. ExPASy Swiss-Prot
Match: PP230_ARATH (Pentatricopeptide repeat-containing protein At3g14580, mitochondrial OS=Arabidopsis thaliana GN=At3g14580 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.164e-11
Identity = 41/136 (30.15%), Postives = 66/136 (48.53%), Query Frame = 1
Query:  328 IFDYMLRMHPSPPPVS------SFNILLAGLAKNKHYDTVLLLF*RLNSTGLFPDLFTYNILINCFCKMGRVSLGFAAFGRILRSCVTPDAATFNSLIQGLCAESRIMEAAALFMKLKAFGCEPDVFTYNTLINGL 717
            +FD + ++  S P +         NIL+ GL ++ + +  L L          P++ T++ LI  FC  G+    F    R+ +  + PD  TFN LI GL  + R+ E   L  ++K  GCEP+  TY  ++ GL
Sbjct:  182 LFDEIHKIFVSAPKLGVEIDACCLNILIKGLCESGNLEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEKERIEPDTITFNILISGLRKKGRVEEGIDLLERMKVKGCEPNPGTYQEVLYGL 317          
BLAST of CK932977 vs. ExPASy Swiss-Prot
Match: PPR78_ARATH (Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.397e-11
Identity = 38/131 (29.01%), Postives = 67/131 (51.15%), Query Frame = 1
Query:  328 IFDYMLRMHPSPPPVSSFNILLAGLAKNKHYDTVLLLF*RLNSTGLFPDLFTYNILINCFCKMGRVSLGFAAFGRILRSCVTPDAATFNSLIQGLCAESRIMEAAALFMKLKAFGCEPDVFTYNTLINGLC 720
            +FD ML  +     + ++N LL  L K+   D    +F  + + GL PD +++ I I+ +C  G V   +    R+ R  + P+  TFN +I+ LC   ++ +A  L  ++   G  PD +TYN+++   C
Sbjct:  230 VFDEMLERN-CVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHC 359          
BLAST of CK932977 vs. ExPASy Swiss-Prot
Match: PP130_ARATH (Pentatricopeptide repeat-containing protein At1g77405 OS=Arabidopsis thaliana GN=At1g77405 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.397e-11
Identity = 56/205 (27.32%), Postives = 83/205 (40.49%), Query Frame = 1
Query:  205 DWLLLTAKVKDRASLDKFLKERCKSSGEGDINVITPNEAFCIFD---------------YMLRMHPSPPPVSSFNILLAGLAKNKHYDTVLLLF*RLNSTGLF--PDLFTYNILINCFCKMG-----------RVSLGFAAFGRILRSCVTPDAATFNSLIQGLCAESRIMEAAALFMKLKAFGCEPDVFTYNTLINGLCRTGHI 735
            D   L AK  D   L  FL++   S  E   NV+T     C+                 Y ++ +   P V ++N ++  L +  ++     L  ++   G    PD +TY ILI+ +C+ G           R+      F  +L     PD  T+N LI G C  +RI  A  LF  +K  GC P+  TYN+ I     T  I
Sbjct:  132 DMACLLAKGNDFKGLWDFLRQ--VSRRENGKNVVTTASITCLMKCLGEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPPDTYTYTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFRGFVPDVVTYNCLIDGCCKTNRIGRALELFEDMKTKGCVPNQVTYNSFIRYYSVTNEI 334          
BLAST of CK932977 vs. ExPASy Swiss-Prot
Match: PPR42_ARATH (Putative pentatricopeptide repeat-containing protein At1g13800 OS=Arabidopsis thaliana GN=At1g13800 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.049e-11
Identity = 34/93 (36.56%), Postives = 52/93 (55.91%), Query Frame = 1
Query:  469 PDLFTYNILINCFCKMGRVSLGFAAFGRILRSCVTPDAATFNSLIQGLCAESRIMEAAALFMKLKAFGCEPDVFTYNTLINGLCRTGHIIVAL 747
            PD+F Y +LI+  CK+G +      F +++ S V PDAA + +LI   C    + EA  +F ++   G +PDV  Y  LI G CR G ++ A+
Sbjct:  759 PDVFYYTVLIDWQCKIGDLGEAKRIFDQMIESGVDPDAAPYTALIACCCKMGYLKEAKMIFDRMIESGVKPDVVPYTALIAGCCRNGFVLKAV 851          
BLAST of CK932977 vs. ExPASy Swiss-Prot
Match: PP393_ARATH (Pentatricopeptide repeat-containing protein At5g18950 OS=Arabidopsis thaliana GN=At5g18950 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 38/140 (27.14%), Postives = 68/140 (48.57%), Query Frame = 1
Query:  316 EAFCIFDYMLRMHPSPPPVSSFNILLAGLAKNKHYDTVLLLF*RLNSTGLFPDLFTYNILINCFCKMGRVSLGFAAFGRILRSCVTPDAATFNSLIQGLCAESRIMEAAALFMKLKAFGCEPDVFTYNTLINGLCRTGHI 735
            EA+CIF  +     +P  V  +  ++ G  +     +   L+  +   G+ P+ F YN++I+   K G +SL  A +  +LR+       + N++I+G C+  +  EA  +F  +   G  P+  TYN LI G C+   +
Sbjct:  301 EAYCIFKNLKDKGYAPDRVV-YTTMIRGFCEKGWLGSARKLWFEMIKKGMRPNEFAYNVMIHGHFKRGEISLVEAFYNEMLRNGYGGTMLSCNTMIKGFCSHGKSDEAFEIFKNMSETGVTPNAITYNALIKGFCKENKV 439          

HSP 2 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 35/129 (27.13%), Postives = 63/129 (48.84%), Query Frame = 1
Query:  364 PPVSSFNILLAGLAKNKHYDTVLLLF*RLNSTGLFPDLFTYNILINCFCKMGRVSLGFAAFGRILRSCVTPDAATFNSLIQGLCAESRIMEAAALFMKLKAFGCEPDVFTYNTLINGLCRTGHIIVALN 750
            P   ++N+++ G  K      V   +  +   G    + + N +I  FC  G+    F  F  +  + VTP+A T+N+LI+G C E+++ +   L+ +LKA G +P    Y  L+  L  +  +  +LN
Sbjct:  351 PNEFAYNVMIHGHFKRGEISLVEAFYNEMLRNGYGGTMLSCNTMIKGFCSHGKSDEAFEIFKNMSETGVTPNAITYNALIKGFCKENKVEKGLKLYKELKALGLKPSGMAYAALVRNLKMSDSVATSLN 479          
The following BLAST results are available for this feature:
BLAST of CK932977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
PP230_ARATH3.164e-1130.15Pentatricopeptide repeat-containing protein At3g14... [more]
PPR78_ARATH5.397e-1129.01Pentatricopeptide repeat-containing protein At1g52... [more]
PP130_ARATH5.397e-1127.32Pentatricopeptide repeat-containing protein At1g77... [more]
PPR42_ARATH7.049e-1136.56Putative pentatricopeptide repeat-containing prote... [more]
PP393_ARATH9.206e-1127.14Pentatricopeptide repeat-containing protein At5g18... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_B07 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932977 ID=CK932977; Name=CK932977; organism=Citrus sinensis; type=EST; length=869bp
GGGGACCTTGAAAAAAACTCTTCAATGGGATTCGAATCTTGTTGTAATCG
TTCATTCTCTTTTGCTTCAGCACCAATATCAGCTTTCAAATCTAACTTCT
CATCTTTACTTGTTCACTTCCGAGACCTCACTACTCGTACTTCTAATTCT
AATTCCAATTCCAAAAATGAACCCTCATTTCCAGCTACAACAACTAAACG
GAACGATTGGTTACTGCTGACAGCCAAAGTCAAAGACAGAGCCTCCCTCG
ACAAATTCCTGAAAGAAAGATGTAAATCATCAGGTGAAGGTGATATTAAT
GTTATTACTCCTAATGAAGCCTTTTGTATCTTTGATTACATGCTCCGTAT
GCACCCTTCTCCGCCTCCTGTCTCTTCCTTCAATATTTTGCTCGCTGGCC
TCGCTAAGAATAAGCATTATGATACTGTCCTTTTACTCTTCTAGAGACTC
AATTCAACTGGGTTGTTTCCAGATCTTTTTACTTACAATATCTTGATTAA
CTGCTTTTGCAAAATGGGTAGAGTATCTCTTGGTTTTGCGGCTTTTGGGA
GGATACTCAGGTCTTGTGTTACTCCAGATGCTGCTACTTTTAATTCTTTG
ATTCAAGGTTTGTGTGCGGAGAGTAGAATCATGGAGGCTGCCGCATTGTT
TATGAAACTCAAAGCGTTTGGTTGTGAGCCTGATGTTTTTACATACAATA
CTTTGATTAATGGATTGTGTCGAACTGGCCATATAATTGTTGCTCTAAAT
GGACACAATCCATTTGGCCTTATAATAGTTGGTGAGTCAAATGTCAAGTA
GCAGCAGCATGTGTTAGCCTAAAATCCCGATCTGGAGCATCTCATTTGTG
TTGCAAAATGACTTCACCT
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