CK932977

Overview
NameCK932977
Unique NameCK932977
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932977 vs. ExPASy Swiss-Prot
Match: PPR41_ARATH (Putative pentatricopeptide repeat-containing protein At1g13630 OS=Arabidopsis thaliana GN=At1g13630 PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.518e-13
Identity = 39/122 (31.97%), Postives = 69/122 (56.56%), Query Frame = 1
Query:  382 NILLAGLAKNKHYDTVLLLF*RLNSTGLFPDLFTYNILINCFCKMGRVSLGFAAFGRILRSCVTPDAATFNSLIQGLCAESRIMEAAALFMKLKAFGCEPDVFTYNTLINGLCRTGHIIVAL 747
            +++L+GL K    D  L LF ++ + GL PDL  Y+I+I+  CK+G+  +    +  +    + P++ T  +L+ GLC +  ++EA +L   L + G   D+  YN +I+G  ++G I  AL
Sbjct:  381 SVMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEAL 502          

HSP 2 Score: 68.1662 bits (165), Expect = 7.049e-11
Identity = 40/128 (31.25%), Postives = 62/128 (48.44%), Query Frame = 1
Query:  364 PPVSSFNILLAGLAKNKHYDTVLLLF*RLNSTGLFPDLFTYNILINCFCKMGRVSLGFAAFGRILRSCVTPDAATFNSLIQGLCAESRIMEAAALFMKLKAFGCEPDVFTYNTLINGLCRTGHIIVAL 747
            P V SFN +++G  K    D     F  +   GL P ++++NILIN  C +G ++        + +  V PD+ T+N L +G      I  A  +   +   G  PDV TY  L+ G C+ G+I + L
Sbjct:  234 PSVVSFNSIMSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGL 361          
BLAST of CK932977 vs. ExPASy Swiss-Prot
Match: PP152_ARATH (Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.518e-13
Identity = 47/152 (30.92%), Postives = 74/152 (48.68%), Query Frame = 1
Query:  280 SGEGDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLAGLAKNKHYDTVLLLF*RLNSTGLFPDLFTYNILINCFCKMGRVSLGFAAFGRILRSCVTPDAATFNSLIQGLCAESRIMEAAALFMKLKAFGCEPDVFTYNTLINGLCRTGHI 735
            S  GD+ +     AF   D M++     P   ++N L+ GL      +   +L   +   G+  D  TYNILIN +C+ G     FA    ++   + P   T+ SLI  LC +++  EA  LF K+   G +PD+   NTL++G C  G++
Sbjct:  338 SNNGDLEM-----AFAYRDEMVKQG-MVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNM 483          

HSP 2 Score: 72.4034 bits (176), Expect = 3.738e-12
Identity = 42/138 (30.43%), Postives = 70/138 (50.72%), Query Frame = 1
Query:  316 EAFCIFDYMLRMHPSPPPVSSFNILLAGLAKNKHYDTVLLLF*RLNSTGLFPDLFTYNILINCFCKMGRVSLGFAAFGRILRSCVTPDAATFNSLIQGLCAESRIMEAAALFMKLKAFGCEPDVFTYNTLINGLCRTG 729
            +AF + D M+     P   +  +++     KNK  +   L F ++   G+ PDL   N L++  C +G +   F+    +    + PD  T+N L++GLC E +  EA  L  ++K  G +PD  +YNTLI+G  + G
Sbjct:  415 KAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADEL-FEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKG 551          
BLAST of CK932977 vs. ExPASy Swiss-Prot
Match: PPR9_ARATH (Pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.588e-13
Identity = 43/137 (31.39%), Postives = 71/137 (51.82%), Query Frame = 1
Query:  313 NEAFCIFDYMLRMHPSPPPVSSFNILLAGLAKNKHYDTVLLLF*RLNSTGLFPDLFTYNILINCFCKMGRVSLGFAAFGRILRSCVTPDAATFNSLIQGLCAESRIMEAAALFMKLKAFGCEPDVFTYNTLINGLCR 723
            NE + +F+ M+R   S P V+ + +L+ G AK+   +  + L  R+   G  PD+ TY++++N  CK GRV      F       +  ++  ++SLI GL    R+ EA  LF ++   GC  D + YN LI+   +
Sbjct:  344 NEGYTVFENMIRKG-SKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTK 479          
BLAST of CK932977 vs. ExPASy Swiss-Prot
Match: PPR40_ARATH (Pentatricopeptide repeat-containing protein At1g13040, mitochondrial OS=Arabidopsis thaliana GN=At1g13040 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.588e-13
Identity = 42/136 (30.88%), Postives = 66/136 (48.53%), Query Frame = 1
Query:  316 EAFCIFDYMLRMHPSPPPVSSFNILLAGLAKNKHYDTVLLLF*RLNSTGLFPDLFTYNILINCFCKMGRVSLGFAAFGRILRSCVTPDAATFNSLIQGLCAESRIMEAAALFMKLKAFGCEPDVFTYNTLINGLCR 723
            +A+ +F+ M R       V ++  L+    +  +      L  ++   GL PD   Y  +++  CK G V   +  F  ++   +TPDA ++NSLI GLC   R+ EA  LF  +K   C PD  T+  +I GL R
Sbjct:  343 KAYRLFEEM-RQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIR 477          
BLAST of CK932977 vs. ExPASy Swiss-Prot
Match: PP437_ARATH (Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.588e-13
Identity = 49/162 (30.25%), Postives = 81/162 (50.00%), Query Frame = 1
Query:  313 NEAFCIFDYMLRMHPSPPPVSSFNILLAGLAKNKHYDTVLLLF*RLNSTGLFPDLFTYNILINCFCKMGRVSLGFAAFGRILRSCVTPDAATFNSLIQGLCAESRIMEAAALFMKLKAFGCEPDVFTYNTLINGLCRTGHIIVALNGHNPFGLIIVGESNVK 798
            +EA  +FD M ++   P  V+ ++IL+    +    DT L     +  TGL   ++ YN LIN  CK G +S        ++   + P   T+ SL+ G C++ +I +A  L+ ++   G  P ++T+ TL++GL R G I  A+   N      + E NVK
Sbjct:  384 HEAELLFDRMGKIGLRPNDVT-YSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNE-----MAEWNVK 539          

HSP 2 Score: 73.9442 bits (180), Expect = 1.285e-12
Identity = 44/169 (26.04%), Postives = 77/169 (45.56%), Query Frame = 1
Query:  265 ERCKSSGEGDINVITPN--------EAFCIFDYMLRMHPSPPPVSSFNILLAGLAKNKHYDTVLLLF*RLNSTGLFPDLFTYNILINCFCKMGRVSLGFAAFGRILRSCVTPDAATFNSLIQGLCAESRIMEAAALFMKLKAFGCEPDVFTYNTLINGLCRTGHIIVAL 747
            E+CK S     +++  +        +   +F  M+      P V + + LL GL K +H+   + LF  + S G+ PD++ Y  +I   C++  +S        +  +    +   +N LI GLC + ++ EA  +   L     +PDV TY TL+ GLC+     + L
Sbjct:  149 EKCKLSSSSSFDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGL 317          

HSP 3 Score: 71.2478 bits (173), Expect = 8.327e-12
Identity = 41/128 (32.03%), Postives = 63/128 (49.22%), Query Frame = 1
Query:  364 PPVSSFNILLAGLAKNKHYDTVLLLF*RLNSTGLFPDLFTYNILINCFCKMGRVSLGFAAFGRILRSCVTPDAATFNSLIQGLCAESRIMEAAALFMKLKAFGCEPDVFTYNTLINGLCRTGHIIVAL 747
            P +  +N L+  L K + +    LLF R+   GL P+  TY+ILI+ FC+ G++    +  G ++ + +      +NSLI G C    I  A     ++     EP V TY +L+ G C  G I  AL
Sbjct:  365 PNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKAL 492          
BLAST of CK932977 vs. ExPASy Swiss-Prot
Match: PP404_ARATH (Pentatricopeptide repeat-containing protein At5g38730 OS=Arabidopsis thaliana GN=At5g38730 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.381e-13
Identity = 44/123 (35.77%), Postives = 64/123 (52.03%), Query Frame = 1
Query:  379 FNILLAGLAKNKHYDTVLLLF*RLNSTGLFPDLFTYNILINCFCKMGRVSLGFAAFGRILRSCVTPDAATFNSLIQGLCAESRIMEAAALFMKLKAFGCEPDVFTYNTLINGLCRTGHIIVAL 747
            +N+L+   +K+   +    L   +   G+FPD+FTYN LI+ +CK        +   R+ RS V P+  T+NS I G   E R+ EA  LF ++K      +  TY TLI+G CR   I  AL
Sbjct:  206 YNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSREGRMREATRLFREIKD-DVTANHVTYTTLIDGYCRMNDIDEAL 327          
BLAST of CK932977 vs. ExPASy Swiss-Prot
Match: PP325_ARATH (Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.381e-13
Identity = 38/125 (30.40%), Postives = 70/125 (56.00%), Query Frame = 1
Query:  364 PPVSSFNILLAGLAKNKHYDTVLLLF*RLNSTGLFPDLFTYNILINCFCKMGRVSLGFAAFGRILRSCVTPDAATFNSLIQGLCAESRIMEAAALFMKLKAFGCEPDVFTYNTLINGLCRTGHII 738
            P V ++++++ G  K +  +     F  + S  + P+   YN LI  +C+ GR+S+       +    ++P++AT+ SLI+G+   SR+ EA  LF +++  G EP+VF Y  LI+G  + G ++
Sbjct:  621 PDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMV 745          

HSP 2 Score: 68.5514 bits (166), Expect = 5.397e-11
Identity = 37/124 (29.84%), Postives = 59/124 (47.58%), Query Frame = 1
Query:  376 SFNILLAGLAKNKHYDTVLLLF*RLNSTGLFPDLFTYNILINCFCKMGRVSLGFAAFGRILRSCVTPDAATFNSLIQGLCAESRIMEAAALFMKLKAFGCEPDVFTYNTLINGLCRTGHIIVAL 747
            S+N L++G    K  D   +    +   GL PD +TY+ILI     M +V      +    R+ + PD  T++ +I G C   R  E    F ++ +   +P+   YN LI   CR+G + +AL
Sbjct:  555 SYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMAL 678          
BLAST of CK932977 vs. ExPASy Swiss-Prot
Match: PP292_ARATH (Pentatricopeptide repeat-containing protein At3g61520, mitochondrial OS=Arabidopsis thaliana GN=At3g61520 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.381e-13
Identity = 52/173 (30.06%), Postives = 83/173 (47.98%), Query Frame = 1
Query:  247 LDKFLKERCKSSGEGDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLAGLAKNKHYDTVLLLF*RLNSTGLFPDLFTYNILINCFCKMGRVSLGFAAFGRIL------RSCVTPDAATFNSLIQGLCAESRIMEAAALFMKLK-AFGCEPDVFTYNTLINGLCRTGHIIVA 744
            L +F+   CK++          N A+ I   +++ + +P     FN LL+ L +N     +  L  +++   + PD+ T  ILIN  CK  RV      F ++        + +  D+  FN+LI GLC   R+ EA  L +++K    C P+  TYN LI+G CR G +  A
Sbjct:  262 LTRFISSLCKNA--------RANAAWDILSDLMK-NKTPLEAPPFNALLSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLGILINTLCKSRRVDEALEVFEKMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKLEERCAPNAVTYNCLIDGYCRAGKLETA 425          
BLAST of CK932977 vs. ExPASy Swiss-Prot
Match: PPR33_ARATH (Pentatricopeptide repeat-containing protein At1g11630, mitochondrial OS=Arabidopsis thaliana GN=At1g11630 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.767e-13
Identity = 40/128 (31.25%), Postives = 67/128 (52.34%), Query Frame = 1
Query:  364 PPVSSFNILLAGLAKNKHYDTVLLLF*RLNSTGLFPDLFTYNILINCFCKMGRVSLGFAAFGRILRSCVTPDAATFNSLIQGLCAESRIMEAAALFMKLKAFGCEPDVFTYNTLINGLCRTGHIIVAL 747
            P  +SF +++ G  K + +D V  +   ++  G+   + TYNI+I C CK  + +   A    ++   + P++ T++ LI G C+E  + EA  LF  +   G +PD   Y TLI+ LC+ G    AL
Sbjct:  215 PTAASFGLMIDGFYKEEKFDEVRKVMRMMDEFGVHVGVATYNIMIQCLCKRKKSAEAKALIDGVMSCRMRPNSVTYSLLIHGFCSEENLDEAMNLFEVMVCNGYKPDSECYFTLIHCLCKGGDFETAL 342          
BLAST of CK932977 vs. ExPASy Swiss-Prot
Match: PP401_ARATH (Pentatricopeptide repeat-containing protein At5g28460 OS=Arabidopsis thaliana GN=At5g28460 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.767e-13
Identity = 52/173 (30.06%), Postives = 83/173 (47.98%), Query Frame = 1
Query:  247 LDKFLKERCKSSGEGDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLAGLAKNKHYDTVLLLF*RLNSTGLFPDLFTYNILINCFCKMGRVSLGFAAFGRIL------RSCVTPDAATFNSLIQGLCAESRIMEAAALFMKLK-AFGCEPDVFTYNTLINGLCRTGHIIVA 744
            L +F+   CK++          N A+ I   +++ + +P     FN LL+ L +N     +  L  +++   + PD+ T  ILIN  CK  RV      F ++        + +  D+  FN+LI GLC   R+ EA  L +++K    C P+  TYN LI+G CR G +  A
Sbjct:  262 LTRFISSLCKNA--------RANTAWDILSDLMK-NKTPLEAPPFNALLSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLGILINTLCKSRRVDEALEVFEQMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKLEERCVPNAVTYNCLIDGYCRAGKLETA 425          
The following BLAST results are available for this feature:
BLAST of CK932977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
PPR41_ARATH1.518e-1331.97Putative pentatricopeptide repeat-containing prote... [more]
PP152_ARATH1.518e-1330.92Pentatricopeptide repeat-containing protein At2g15... [more]
PPR9_ARATH2.588e-1331.39Pentatricopeptide repeat-containing protein At1g03... [more]
PPR40_ARATH2.588e-1330.88Pentatricopeptide repeat-containing protein At1g13... [more]
PP437_ARATH2.588e-1330.25Putative pentatricopeptide repeat-containing prote... [more]
PP404_ARATH3.381e-1335.77Pentatricopeptide repeat-containing protein At5g38... [more]
PP325_ARATH3.381e-1330.40Pentatricopeptide repeat-containing protein At4g19... [more]
PP292_ARATH3.381e-1330.06Pentatricopeptide repeat-containing protein At3g61... [more]
PPR33_ARATH5.767e-1331.25Pentatricopeptide repeat-containing protein At1g11... [more]
PP401_ARATH5.767e-1330.06Pentatricopeptide repeat-containing protein At5g28... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_B07 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932977 ID=CK932977; Name=CK932977; organism=Citrus sinensis; type=EST; length=869bp
GGGGACCTTGAAAAAAACTCTTCAATGGGATTCGAATCTTGTTGTAATCG
TTCATTCTCTTTTGCTTCAGCACCAATATCAGCTTTCAAATCTAACTTCT
CATCTTTACTTGTTCACTTCCGAGACCTCACTACTCGTACTTCTAATTCT
AATTCCAATTCCAAAAATGAACCCTCATTTCCAGCTACAACAACTAAACG
GAACGATTGGTTACTGCTGACAGCCAAAGTCAAAGACAGAGCCTCCCTCG
ACAAATTCCTGAAAGAAAGATGTAAATCATCAGGTGAAGGTGATATTAAT
GTTATTACTCCTAATGAAGCCTTTTGTATCTTTGATTACATGCTCCGTAT
GCACCCTTCTCCGCCTCCTGTCTCTTCCTTCAATATTTTGCTCGCTGGCC
TCGCTAAGAATAAGCATTATGATACTGTCCTTTTACTCTTCTAGAGACTC
AATTCAACTGGGTTGTTTCCAGATCTTTTTACTTACAATATCTTGATTAA
CTGCTTTTGCAAAATGGGTAGAGTATCTCTTGGTTTTGCGGCTTTTGGGA
GGATACTCAGGTCTTGTGTTACTCCAGATGCTGCTACTTTTAATTCTTTG
ATTCAAGGTTTGTGTGCGGAGAGTAGAATCATGGAGGCTGCCGCATTGTT
TATGAAACTCAAAGCGTTTGGTTGTGAGCCTGATGTTTTTACATACAATA
CTTTGATTAATGGATTGTGTCGAACTGGCCATATAATTGTTGCTCTAAAT
GGACACAATCCATTTGGCCTTATAATAGTTGGTGAGTCAAATGTCAAGTA
GCAGCAGCATGTGTTAGCCTAAAATCCCGATCTGGAGCATCTCATTTGTG
TTGCAAAATGACTTCACCT
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