CK932977

Overview
NameCK932977
Unique NameCK932977
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932977 vs. ExPASy Swiss-Prot
Match: PPR82_ARATH (Pentatricopeptide repeat-containing protein At1g55890, mitochondrial OS=Arabidopsis thaliana GN=At1g55890 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.327e-12
Identity = 38/122 (31.15%), Postives = 63/122 (51.64%), Query Frame = 1
Query:  364 PPVSSFNILLAGLAKNKHYDTVLLLF*RLNSTGLFPDLFTYNILINCFCKMGRVSLGFAAFGRILRSCVTPDAATFNSLIQGLCAESRIMEAAALFMKLKAFGCEPDVFTYNTLINGLCRTG 729
            P + S+N L+  L +       + L   + + GL PD+ T+N L+      G+  LG   + +++   V  D  T+N+ + GL  E++  E   LF +LKA G +PDVF++N +I G    G
Sbjct:  178 PDIVSYNTLIKALCEKDSLPEAVALLDEIENKGLKPDIVTFNTLLLSSYLKGQFELGEEIWAKMVEKNVAIDIRTYNARLLGLANEAKSKELVNLFGELKASGLKPDVFSFNAMIRGSINEG 299          
BLAST of CK932977 vs. ExPASy Swiss-Prot
Match: PPR20_ARATH (Pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Arabidopsis thaliana GN=At1g07740 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.327e-12
Identity = 38/129 (29.46%), Postives = 60/129 (46.51%), Query Frame = 1
Query:  364 PPVSSFNILLAGLAKNKHYDTVLLLF*RLNSTGLFPDLFTYNILINCFCKMGRVSLGFAAFGRILRSCVTPDAATFNSLIQGLCAESRIMEAAALFMKLKAFGCEPDVFTYNTLINGLCRTGHIIVALN 750
            P   +F +L+ GL     Y+    L   +   G  P L  Y IL++   K GR+       G + +  + PD   +N L+  LC E R+ EA  +  +++  GC+P+  TY  +I+G CR       LN
Sbjct:  254 PNAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNYGILMSDLGKRGRIDEAKLLLGEMKKRRIKPDVVIYNILVNHLCTECRVPEAYRVLTEMQMKGCKPNAATYRMMIDGFCRIEDFDSGLN 382          
BLAST of CK932977 vs. ExPASy Swiss-Prot
Match: PP241_ARATH (Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.327e-12
Identity = 47/173 (27.17%), Postives = 83/173 (47.98%), Query Frame = 1
Query:  229 VKDRASLDKFLKERCKSSGEGDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLAGLAKNKHYDTVLLLF*RLNSTGLFPDLFTYNILINCFCKMGRVSLGFAAFGRILRSCVTPDAATFNSLIQGLCAESRIMEAAALFMKLKAFGCEPDVFTYNTLINGLCRTGHIIVAL 747
            V D  S +  +  R KS G      +TPN A  + D M+R     P   ++N LL+  +++ + D  + +F  + +    PDL+TYN +I+ + + G  +     F  +      PDA T+NSL+     E    +   ++ +++  G   D  TYNT+I+   + G + +AL
Sbjct:  257 VPDLISFNTLINARLKSGG------LTPNLAVELLD-MVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLAL 422          
BLAST of CK932977 vs. ExPASy Swiss-Prot
Match: PPR79_ARATH (Putative pentatricopeptide repeat-containing protein At1g53330 OS=Arabidopsis thaliana GN=At1g53330 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.088e-11
Identity = 53/177 (29.94%), Postives = 80/177 (45.20%), Query Frame = 1
Query:  226 KVKDR-ASLDKFLK----------ERCKSSGEGDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLAGLAKNKHYDTVLLL-F*RLNSTGLFPDLFTYNILINCFCKMGRVSLGFAAFGRILRSCVTPDAATFNSLIQGLCAESRIMEAAALFMKLKAFGCEPDVFTYNTLINGLC 720
            K+K+R +S+D+F K            C  SG  D       +A  +FD M++    P  V+ F  L+ GL K+      L +    L   G+ P +  Y  LI   C++G +S  F          +  DAA +++LI  L    R  E + +  ++   GC+PD  TYN LING C
Sbjct:  136 KMKERLSSIDEFGKPDACTYNILIHGCSQSGCFD-------DALKLFDEMVKKKVKPTGVT-FGTLIHGLCKDSRVKEALKMKHDMLKVYGVRPTVHIYASLIKALCQIGELSFAFKLKDEAYEGKIKVDAAIYSTLISSLIKAGRSNEVSMILEEMSEKGCKPDTVTYNVLINGFC 304          
BLAST of CK932977 vs. ExPASy Swiss-Prot
Match: PP338_ARATH (Pentatricopeptide repeat-containing protein At4g26680, mitochondrial OS=Arabidopsis thaliana GN=At4g26680 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.420e-11
Identity = 44/149 (29.53%), Postives = 74/149 (49.66%), Query Frame = 1
Query:  283 GEGDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLAGLAKNKHYDTVLLLF*RLNSTGLFPDLFTYNILINCFCKMGRVSLGFAAFGRILRSCVTPDAATFNSLIQGLCAESRIMEAAALFMKLKAFGCEPDVFTYNTLINGLCRTG 729
            G+G +++     A   +  M R   SP P +  N++++G  ++   D  + L   +   G      +YN LI   C+ G +S        + +S + P+  TFN+LI G C   ++ EA+ +F ++KA    P+  TYNTLING  + G
Sbjct:  215 GQGRVDI-----ALRFYREMRRCKISPNPYT-LNMVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQG 357          
BLAST of CK932977 vs. ExPASy Swiss-Prot
Match: PP327_ARATH (Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana GN=EMB1025 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.420e-11
Identity = 51/177 (28.81%), Postives = 82/177 (46.33%), Query Frame = 1
Query:  247 LDKFLKERCKSSGEGDINVITPNEAFC-----IFDYM----LRMHPSPPPVSSFNILLAGLAKNKHYDTVLLLF*RLNSTGLFPDLFTYNILINCFCKMGRVSLGFAAFGRILRSCVTPDAATFNSLIQGLCAESRIMEAAALFMKLKAFGCEPDVFTYNTLINGLCRTGHIIVALN 750
            +D+F  +R   S    +NVI  NE         +DY+    + M+ SP  +S FN+++  L K +  D  + +F  +      PD +TY  L++  CK  R+         +     +P    +N LI GLC +  +     L   +   GC P+  TYNTLI+GLC  G +  A++
Sbjct:  139 VDEFRCKRSVKSFNSVLNVII-NEGLYHRGLEFYDYVVNSNMNMNISPNGLS-FNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVS 313          
BLAST of CK932977 vs. ExPASy Swiss-Prot
Match: PP141_ARATH (Pentatricopeptide repeat-containing protein At2g01740 OS=Arabidopsis thaliana GN=At2g01740 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.420e-11
Identity = 38/124 (30.65%), Postives = 62/124 (50.00%), Query Frame = 1
Query:  364 PPVSSFNILLAGLAKNKHYDTVLLLF*RLNSTGLFPDLFTYNILINCFCKMGRVSLGFAAFGRILRSCVTPDAATFNSLIQGLCAESRIMEAAALFMKLKAFGCEPDVFTYNTLINGLCRTGHI 735
            P + SFN L  G +K K  D V +    +      P++ TY+  I+ FCK G + L   +F  + R  ++P+  TF  LI G C    +  A +L+ +++      +V TY  LI+G C+ G +
Sbjct:  127 PDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKC-CSPNVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALIDGFCKKGEM 249          
BLAST of CK932977 vs. ExPASy Swiss-Prot
Match: PP164_ARATH (Pentatricopeptide repeat-containing protein At2g19280 OS=Arabidopsis thaliana GN=At2g19280 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.423e-11
Identity = 44/141 (31.21%), Postives = 65/141 (46.10%), Query Frame = 1
Query:  313 NEAFCIFDYMLRMHPSPPPVSSFNILLAGLAKNKHYDTVLLLF*RLNSTGLFPDLFTYNILINCFCKMGRVSLGFAAFGRILRSCVTPDAATFNSLIQGLCAESRIMEAAALFMKLKAFGCEPDVFTYNTLINGLCRTGHI 735
            N+ F + D M R     P V+++NIL+  +    + D    +   L   G  P    +  +I  F K G     F  +  +    + PD  T ++L+ G C   R+ +A  LF KL   G +PDV  YNTLI+G C  G I
Sbjct:  495 NKVFELIDEM-RSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYCSVGDI 634          
BLAST of CK932977 vs. ExPASy Swiss-Prot
Match: PP117_ARATH (Pentatricopeptide repeat-containing protein At1g73400, mitochondrial OS=Arabidopsis thaliana GN=At1g73400 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.423e-11
Identity = 41/135 (30.37%), Postives = 64/135 (47.41%), Query Frame = 1
Query:  313 NEAFCIFDYMLRMHP--SPPPVSSFNILLAGLAKNKHYDTVLLLF*RLNSTGLFPDLFTYNILINCFCKMGRVSLGFAAFGRILRSCVTPDAATFNSLIQGLCAESRIMEAAALFMKLKAFGCEPDVFTYNTLIN 711
            +EA  +FD+M+      S P   +F +++  LAKN   +    L  R+ STG  PD+ TY  +I   C   +V   +     +      PD  T+N  ++ LC   +  EA  L+ ++    C P V TYN LI+
Sbjct:  320 DEAADLFDFMITKGSAVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEKVDEAYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLIS 454          
BLAST of CK932977 vs. ExPASy Swiss-Prot
Match: PPR77_ARATH (Pentatricopeptide repeat-containing protein At1g52620 OS=Arabidopsis thaliana GN=At1g52620 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.164e-11
Identity = 42/145 (28.97%), Postives = 75/145 (51.72%), Query Frame = 1
Query:  313 NEAFCIFDYMLRMHPSPPPVSSFNILLAGLAKNKHYDTVLLLF*RLNSTGLFPDLFTYNILINCFCKMGRVSLGFAAF-GRILRSCVTPDAATFNSLIQGLCAESRIMEAAALFMKLKAFGCEPDVFTYNTLINGLCRTGHIIVA 744
            ++A  I+DY++ ++ S P V + N LL+ L K++       ++  +   G   D ++  IL+   C  G+V +G     GR  + C+ P+   +N++I G C    I  A  +F +LK  G  P + T+ T+ING C+ G  + +
Sbjct:  151 SKAVEIYDYVVELYDSVPDVIACNSLLSLLVKSRRLGDARKVYDEMCDRGDSVDNYSTCILVKGMCNEGKVEVGRKLIEGRWGKGCI-PNIVFYNTIIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCKEGDFVAS 294          

HSP 2 Score: 69.3218 bits (168), Expect = 3.164e-11
Identity = 39/118 (33.05%), Postives = 59/118 (50.00%), Query Frame = 1
Query:  376 SFNILLAGLAKNKHYDTVLLLF*RLNSTGLFPDLFTYNILINCFCKMGRVSLGFAAFGRILRSCVTPDAATFNSLIQGLCAESRIMEAAALFMKLKAFGCEPDVFTYNTLINGLCRTG 729
            S+  L+    K+K YD    L  ++   G  PD+ TY ILI+     G +        +++   V+PDAA +N L+ GLC   R + A  LF ++      PD + Y TLI+G  R+G
Sbjct:  382 SYAPLIQAYCKSKEYDIASKLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSG 499          

HSP 3 Score: 68.5514 bits (166), Expect = 5.397e-11
Identity = 40/128 (31.25%), Postives = 62/128 (48.44%), Query Frame = 1
Query:  364 PPVSSFNILLAGLAKNKHYDTVLLLF*RLNSTGLFPDLFTYNILINCFCKMGRVSLGFAAFGRILRSCVTPDAATFNSLIQGLCAESRIMEAAALFMKLKAFGCEPDVFTYNTLINGLCRTGHIIVAL 747
            P + ++ IL+ GL  + H D  + +  +L   G+ PD   YN+L++  CK GR       F  +L   + PDA  + +LI G        EA  +F      G + DV  +N +I G CR+G +  AL
Sbjct:  413 PDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEAL 540          
The following BLAST results are available for this feature:
BLAST of CK932977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
PPR82_ARATH8.327e-1231.15Pentatricopeptide repeat-containing protein At1g55... [more]
PPR20_ARATH8.327e-1229.46Pentatricopeptide repeat-containing protein At1g07... [more]
PP241_ARATH8.327e-1227.17Pentatricopeptide repeat-containing protein At3g18... [more]
PPR79_ARATH1.088e-1129.94Putative pentatricopeptide repeat-containing prote... [more]
PP338_ARATH1.420e-1129.53Pentatricopeptide repeat-containing protein At4g26... [more]
PP327_ARATH1.420e-1128.81Pentatricopeptide repeat-containing protein At4g20... [more]
PP141_ARATH1.420e-1130.65Pentatricopeptide repeat-containing protein At2g01... [more]
PP164_ARATH2.423e-1131.21Pentatricopeptide repeat-containing protein At2g19... [more]
PP117_ARATH2.423e-1130.37Pentatricopeptide repeat-containing protein At1g73... [more]
PPR77_ARATH3.164e-1128.97Pentatricopeptide repeat-containing protein At1g52... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_B07 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932977 ID=CK932977; Name=CK932977; organism=Citrus sinensis; type=EST; length=869bp
GGGGACCTTGAAAAAAACTCTTCAATGGGATTCGAATCTTGTTGTAATCG
TTCATTCTCTTTTGCTTCAGCACCAATATCAGCTTTCAAATCTAACTTCT
CATCTTTACTTGTTCACTTCCGAGACCTCACTACTCGTACTTCTAATTCT
AATTCCAATTCCAAAAATGAACCCTCATTTCCAGCTACAACAACTAAACG
GAACGATTGGTTACTGCTGACAGCCAAAGTCAAAGACAGAGCCTCCCTCG
ACAAATTCCTGAAAGAAAGATGTAAATCATCAGGTGAAGGTGATATTAAT
GTTATTACTCCTAATGAAGCCTTTTGTATCTTTGATTACATGCTCCGTAT
GCACCCTTCTCCGCCTCCTGTCTCTTCCTTCAATATTTTGCTCGCTGGCC
TCGCTAAGAATAAGCATTATGATACTGTCCTTTTACTCTTCTAGAGACTC
AATTCAACTGGGTTGTTTCCAGATCTTTTTACTTACAATATCTTGATTAA
CTGCTTTTGCAAAATGGGTAGAGTATCTCTTGGTTTTGCGGCTTTTGGGA
GGATACTCAGGTCTTGTGTTACTCCAGATGCTGCTACTTTTAATTCTTTG
ATTCAAGGTTTGTGTGCGGAGAGTAGAATCATGGAGGCTGCCGCATTGTT
TATGAAACTCAAAGCGTTTGGTTGTGAGCCTGATGTTTTTACATACAATA
CTTTGATTAATGGATTGTGTCGAACTGGCCATATAATTGTTGCTCTAAAT
GGACACAATCCATTTGGCCTTATAATAGTTGGTGAGTCAAATGTCAAGTA
GCAGCAGCATGTGTTAGCCTAAAATCCCGATCTGGAGCATCTCATTTGTG
TTGCAAAATGACTTCACCT
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