CK932978

Overview
NameCK932978
Unique NameCK932978
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932978_ssr142 microsatellite CK932978_ssr142:142..153. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2701 contig Csv1_Contig2701:13..812. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_MYCBT (Transaldolase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=tal PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.950e-29
Identity = 71/157 (45.22%), Postives = 102/157 (64.97%), Query Frame = 2
Query:  341 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            G S W D+L R      +L  LI    V GVT+NP+IFQKA+S  + Y+ Q  EL   G D++A    +   D++ AC      +++++G DG VS+EV PRLA +T+ T++ A  L K+V+RPN++IKIPAT   +P+I  V+++GISVNVTLIFS
Sbjct:   15 GVSVWLDDLSRDRLRSGNLQELIDTKSVVGVTTNPSIFQKALSEGHTYDAQIAELAARGADVDATIRTVTTDDVRSACDVLVPQWEDSDGVDGRVSIEVDPRLAHETEKTIQQAIELWKIVDRPNLFIKIPATKAGLPAISAVLAEGISVNVTLIFS 171          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_MYCBP (Transaldolase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=tal PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.950e-29
Identity = 71/157 (45.22%), Postives = 102/157 (64.97%), Query Frame = 2
Query:  341 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            G S W D+L R      +L  LI    V GVT+NP+IFQKA+S  + Y+ Q  EL   G D++A    +   D++ AC      +++++G DG VS+EV PRLA +T+ T++ A  L K+V+RPN++IKIPAT   +P+I  V+++GISVNVTLIFS
Sbjct:   15 GVSVWLDDLSRDRLRSGNLQELIDTKSVVGVTTNPSIFQKALSEGHTYDAQIAELAARGADVDATIRTVTTDDVRSACDVLVPQWEDSDGVDGRVSIEVDPRLAHETEKTIQQAIELWKIVDRPNLFIKIPATKAGLPAISAVLAEGISVNVTLIFS 171          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_MYCBO (Transaldolase OS=Mycobacterium bovis GN=tal PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.950e-29
Identity = 71/157 (45.22%), Postives = 102/157 (64.97%), Query Frame = 2
Query:  341 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            G S W D+L R      +L  LI    V GVT+NP+IFQKA+S  + Y+ Q  EL   G D++A    +   D++ AC      +++++G DG VS+EV PRLA +T+ T++ A  L K+V+RPN++IKIPAT   +P+I  V+++GISVNVTLIFS
Sbjct:   15 GVSVWLDDLSRDRLRSGNLQELIDTKSVVGVTTNPSIFQKALSEGHTYDAQIAELAARGADVDATIRTVTTDDVRSACDVLVPQWEDSDGVDGRVSIEVDPRLAHETEKTIQQAIELWKIVDRPNLFIKIPATKAGLPAISAVLAEGISVNVTLIFS 171          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL2_ANASP (Transaldolase 2 OS=Anabaena sp. (strain PCC 7120) GN=tal2 PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.852e-29
Identity = 67/160 (41.88%), Postives = 104/160 (65.00%), Query Frame = 2
Query:  332 EQEGQSPWYDNLCRPVT---DLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            ++ GQS W DNL R +    +L  L+ + G+ G+TSNPAIF+KAI+++  Y+      V++G      Y  L+  DI++AC     +Y+ +N  DGYVS+EV P +A DTQ T+  A+  ++ + R NV IKIP T   +P++++VI++GI+VNVTL+FS
Sbjct:   10 KEYGQSIWMDNLSRDIIQSGELKNLVENQGICGITSNPAIFEKAIANNVIYDADIEAGVRAGLPTYKIYESLIFADIRNACDILRPVYEASNKLDGYVSIEVPPTIAHDTQATINEARRYYQEIGRENVMIKIPGTEAGLPAVEQVIAEGINVNVTLLFS 169          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_SACEN (Transaldolase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=tal PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.031e-29
Identity = 76/157 (48.41%), Postives = 102/157 (64.97%), Query Frame = 2
Query:  341 GQSPWYDNLCRPVTD---LLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            G S W D+L R   +   L  LI+   V GVTSNP IF KA+S++  Y++Q REL   G  ++ A  EL  +DI++A   F +IY+   G DG VS+EV PRLA DT+ TV  A  L K V+RPN+ +KIPAT   +P+I  V+++G+SVNVTLIFS
Sbjct:   14 GVSIWLDDLSRKRINSGNLAELISDYAVVGVTSNPTIFAKALSNAADYDEQVRELAARGASVDDAVRELTTRDIREAADIFRNIYEA--GHDGRVSLEVDPRLAHDTERTVAEALDLWKAVDRPNLMVKIPATVEGLPAITRVLAEGVSVNVTLIFS 168          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_ACIC1 (Transaldolase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=tal PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.031e-29
Identity = 73/157 (46.50%), Postives = 98/157 (62.42%), Query Frame = 2
Query:  341 GQSPWYDNLCRP---VTDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            G S W D++ R      +L  LI    V GVT+NP IF KAI  S  Y DQ R+L   G D+  A   L   D++ AC     ++D T+G DG VS+EV PRLA DT+ T+  A+ L  +V+RPN++IKIPAT   +P+I + +++GISVNVTLIFS
Sbjct:   12 GVSIWIDDISRDRLQTGNLAALIRDRHVVGVTTNPTIFGKAIEGSARYQDQLRDLAVRGVDVNEALRALTAYDVRWACDVTRPVFDATDGVDGRVSIEVDPRLAHDTEATIAEARALWWLVDRPNLFIKIPATVEGLPAIAQCLAEGISVNVTLIFS 168          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_MYCPA (Transaldolase OS=Mycobacterium paratuberculosis GN=tal PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.571e-29
Identity = 72/157 (45.86%), Postives = 101/157 (64.33%), Query Frame = 2
Query:  341 GQSPWYDNLCRPVT---DLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            G S W D+L R      +L  LI +  V GVT+NP+IFQKA +  +AY+ Q  EL   G D++A    +   D+++AC      ++ ++G DG VS+EV PRLA DT  T+  A  L K+V+RPN++IKIPAT   +P+I  V+++GISVNVTLIFS
Sbjct:   15 GVSVWLDDLSRDRLRSGNLQELIDTKCVVGVTTNPSIFQKAFAEGHAYDSQIAELAARGADVDATIRTVTTDDVRNACDVLTREWENSDGVDGRVSIEVDPRLAGDTDKTIAQAVELWKIVDRPNLFIKIPATQAGLPAITAVLAEGISVNVTLIFS 171          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_FRASN (Transaldolase OS=Frankia sp. (strain EAN1pec) GN=tal PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.121e-28
Identity = 73/157 (46.50%), Postives = 96/157 (61.15%), Query Frame = 2
Query:  341 GQSPWYDNLCRP---VTDLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            G + W D++ R      +L  L  +  V GVTSNP IFQKAI     YN+Q R+L   G D+  A   +   DI+DAC      YD + G DG VS+EV PRLA +T+ TV  A+ L   V+RPN++IKIPAT   +P+I   ++QGISVNVTLIF+
Sbjct:   12 GVAVWLDDISRERIRTGNLAELARTRSVVGVTSNPTIFQKAIGGGETYNEQLRDLAVRGVDVGEAVRAITAADIRDACDILRPAYDASAGVDGRVSLEVDPRLAHETERTVAEARALWWSVDRPNLFIKIPATKSGLPAITATLAQGISVNVTLIFA 168          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL2_STRAW (Transaldolase 2 OS=Streptomyces avermitilis GN=tal2 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.121e-28
Identity = 76/159 (47.80%), Postives = 100/159 (62.89%), Query Frame = 2
Query:  335 QEGQSPWYDNLCRP-VT--DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            +EG + W D+L R  +T  +L  LI    V GVT+NP+IFQKAIS  + Y+ Q  +L      +E A   +   D++DA      ++D T+G DG VS+EV PRLA +T+ TV  AK L  +V+RPN  IKIPAT   +P+I EVI  GISVNVTLIFS
Sbjct:   10 KEGVAIWLDDLSRKRITSGNLAELIDQQHVVGVTTNPSIFQKAISQGDGYDQQVSDLAARRVTVEEAIRMITTADVRDAADILRPVFDATDGQDGRVSIEVDPRLAHNTKATVAEAKQLAWLVDRPNTLIKIPATKAGIPAITEVIGLGISVNVTLIFS 168          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL1_STRCO (Transaldolase 1 OS=Streptomyces coelicolor GN=tal1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.912e-28
Identity = 74/158 (46.84%), Postives = 95/158 (60.13%), Query Frame = 2
Query:  338 EGQSPWYDNLCRPVTD---LLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            +G S W D+L R   +   L  LI +  V GVT+NP+IFQ AI S   Y +Q  +L   G  ++ A   +   D++ A      +YD + G DG VS+EV PRLA DT  TV  A+ L  +V+RPNV IKIPAT   +P+I EVI  GISVNVTLIFS
Sbjct:   20 QGVSVWLDDLSRRRIESGNLAELIRTKNVVGVTTNPSIFQAAIGSGEGYEEQLADLATRGVTVDEAVRMMTTADVRAAADVLRGVYDASGGRDGRVSIEVDPRLAHDTAATVAEARQLSWLVDRPNVMIKIPATKAGLPAITEVIGAGISVNVTLIFS 177          
The following BLAST results are available for this feature:
BLAST of CK932978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
TAL_MYCBT2.950e-2945.22Transaldolase OS=Mycobacterium bovis (strain BCG /... [more]
TAL_MYCBP2.950e-2945.22Transaldolase OS=Mycobacterium bovis (strain BCG /... [more]
TAL_MYCBO2.950e-2945.22Transaldolase OS=Mycobacterium bovis GN=tal PE=3 S... [more]
TAL2_ANASP3.852e-2941.88Transaldolase 2 OS=Anabaena sp. (strain PCC 7120) ... [more]
TAL_SACEN5.031e-2948.41Transaldolase OS=Saccharopolyspora erythraea (stra... [more]
TAL_ACIC15.031e-2946.50Transaldolase OS=Acidothermus cellulolyticus (stra... [more]
TAL_MYCPA6.571e-2945.86Transaldolase OS=Mycobacterium paratuberculosis GN... [more]
TAL_FRASN1.121e-2846.50Transaldolase OS=Frankia sp. (strain EAN1pec) GN=t... [more]
TAL2_STRAW1.121e-2847.80Transaldolase 2 OS=Streptomyces avermitilis GN=tal... [more]
TAL1_STRCO1.912e-2846.84Transaldolase 1 OS=Streptomyces coelicolor GN=tal1... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_B09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932978 ID=CK932978; Name=CK932978; organism=Citrus sinensis; type=EST; length=800bp
GGGGGTATCGTACTCCGTTGAAGCTTACAAATCGTCGCTCTTTATTTCTG
AGTTTTTAGATTCAAGGATCAACGAGTCTTTAATGGCGACCATTTCGAAG
CTTACAAATCCAGCTGTTTCTTCATCATCTTTGAAACCCAGATCATCATC
ATCCTCACTGCCTAAATCTTTGATCAGCCTTCAAACCAAAACTGGGTTCA
ATTCAAAAGTTGCATCTTCTCAGTTGACCCTCAGAAATAACCACCCTTTG
AAGGCCTCTTTGGTTGTGAAATGTTCCCAATCTGGTGGAAATGGAAGTAG
TGCAAAGAGGACAACTCTTCATGATCTCTATGAGCAGGAAGGGCAGAGCC
CTTGGTATGATAACCTTTGCCGCCCCGTCACAGATTTGCTTCCGCTCATT
GCAAGTGGTGTTAGAGGTGTTACCAGCAACCCTGCGATTTTCCAGAAAGC
AATATCTTCATCGAATGCTTACAATGATCAATTTAGGGAACTTGTACAAT
CTGGAAAAGATATTGAAGCTGCATATTGGGAACTTGTGATTAAGGACATT
CAAGATGCATGCAAACACTTTGAGTCAATCTATGATGAAACCAATGGCGG
TGATGGCTATGTTTCTGTCGAAGTTTCTCCCAGACTCGCTGATGATACCC
AAGGGACTGTGGAGGCAGCAAAATGGCTTCACAAAGTGGTTAATCGCCCC
AATGTATACATAAAGATACCTGCCACAGCTCCTTGCGTTCCTTCTATCAA
GGAAGTTATTTCGCAGGGCATTAGTGTCAATGTGACTCTCATATTCTCCC
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