CK932978

Overview
NameCK932978
Unique NameCK932978
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932978_ssr142 microsatellite CK932978_ssr142:142..153. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2701 contig Csv1_Contig2701:13..812. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_MYCUA (Transaldolase OS=Mycobacterium ulcerans (strain Agy99) GN=tal PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.497e-28
Identity = 71/157 (45.22%), Postives = 100/157 (63.69%), Query Frame = 2
Query:  341 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            G S W D+L R      +L  LI    V GVT+NP+IFQKA+S  + Y+ Q  EL + G D++A    +   D+++AC      ++ + G DG VS+EV PRLA +T  T++ A  L K+V+RPN+ IKIPAT   +P+I  V+++GISVNVTLIFS
Sbjct:   15 GVSVWLDDLSRDRLRSGNLQELIDTKSVVGVTTNPSIFQKALSEGHDYDAQVAELAERGADVDATIRTVTTDDVRNACDVLAPRWEASGGVDGRVSIEVDPRLAHETDKTIQQAVELWKIVDRPNLLIKIPATKAGLPAIAAVLAEGISVNVTLIFS 171          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_MYCMM (Transaldolase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=tal PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.497e-28
Identity = 71/157 (45.22%), Postives = 100/157 (63.69%), Query Frame = 2
Query:  341 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            G S W D+L R      +L  LI    V GVT+NP+IFQKA+S  + Y+ Q  EL + G D++A    +   D+++AC      ++ + G DG VS+EV PRLA +T  T++ A  L K+V+RPN+ IKIPAT   +P+I  V+++GISVNVTLIFS
Sbjct:   15 GVSVWLDDLSRDRLRSGNLQELIDTKSVVGVTTNPSIFQKALSEGHDYDAQVAELAERGADVDATIRTVTTDDVRNACDVLAPRWEASGGVDGRVSIEVDPRLAHETDKTIQQAVELWKIVDRPNLLIKIPATKAGLPAIAAVLAEGISVNVTLIFS 171          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_NEIG2 (Transaldolase OS=Neisseria gonorrhoeae (strain NCCP11945) GN=tal PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.563e-28
Identity = 66/156 (42.31%), Postives = 94/156 (60.26%), Query Frame = 2
Query:  341 GQSPWYDNLCRPVT---DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            GQ  W DNL R +    +L  ++  GV GVTSNPAIFQKA +    Y D+   L +     +  Y  + + D++ AC    + ++ T G  G+VS+EVSP LA D QGTVE A+ LH  + R N  IK+PAT   + +++ ++S GISVN+TL+FS
Sbjct:   11 GQQIWLDNLSRSLVQSGELAQMLKQGVCGVTSNPAIFQKAFAGDALYADEVAALKRQNLSPKQRYETMAVADVRAACDVCLAEHESTGGKTGFVSLEVSPELAKDAQGTVEEARRLHAAIARKNAMIKVPATDAGIDALETLVSDGISVNLTLLFS 166          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_NEIG1 (Transaldolase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=tal PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.563e-28
Identity = 66/156 (42.31%), Postives = 94/156 (60.26%), Query Frame = 2
Query:  341 GQSPWYDNLCRPVT---DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            GQ  W DNL R +    +L  ++  GV GVTSNPAIFQKA +    Y D+   L +     +  Y  + + D++ AC    + ++ T G  G+VS+EVSP LA D QGTVE A+ LH  + R N  IK+PAT   + +++ ++S GISVN+TL+FS
Sbjct:   11 GQQIWLDNLSRSLVQSGELAQMLKQGVCGVTSNPAIFQKAFAGDALYADEVAALKRQNLSPKQRYETMAVADVRAACDVCLAEHESTGGKTGFVSLEVSPELAKDAQGTVEEARRLHAAIARKNAMIKVPATDAGIDALETLVSDGISVNLTLLFS 166          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_THISH (Transaldolase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=tal PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.488e-28
Identity = 70/159 (44.03%), Postives = 102/159 (64.15%), Query Frame = 2
Query:  341 GQSPWYDNLCRPVTD---LLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQS--GKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            GQS WYD + R + D   L  LI   G+ G+TSNPAIF KAI+ ++ Y    R+ +++  G + EA ++ L I+D+Q A   F  +Y ET G DG+VS+EVSP LA D + TV  A+ L   ++RPN  IK+P T   V +++ +I+ G++VNVTL+FS
Sbjct:   14 GQSIWYDYIRRDLLDSGELARLIREDGLGGLTSNPAIFDKAIAGTDLYRTAIRDALRADPGLNDEALFFRLAIEDLQRAADVFLPLYRETGGADGFVSLEVSPDLAHDAEATVREARALFARMDRPNAMIKVPGTRAGVEALETLIADGVNVNVTLLFS 172          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_MYCLE (Transaldolase OS=Mycobacterium leprae GN=tal PE=3 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.606e-27
Identity = 68/157 (43.31%), Postives = 99/157 (63.06%), Query Frame = 2
Query:  341 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            G S W D+L R      +L  LI    V GVT+NP+IFQKA ++ +AY+ Q  EL + G +++     +   D++ AC      ++ ++G DG VS+EV PRLA DT  T+  A  L ++V+ PN++IKIPAT   +P+I  V+++GISVNVTLIFS
Sbjct:   17 GVSVWLDDLSRDRLQSGNLQKLIDTKSVVGVTTNPSIFQKAFANGHAYDAQIAELAKRGANVDVTVRTVTTDDVRHACDVLACEWEASHGKDGRVSIEVDPRLAHDTDKTIAQAVELWRIVDHPNLFIKIPATKAGLPAITAVLAEGISVNVTLIFS 173          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_MYCLB (Transaldolase OS=Mycobacterium leprae (strain Br4923) GN=tal PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.606e-27
Identity = 68/157 (43.31%), Postives = 99/157 (63.06%), Query Frame = 2
Query:  341 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            G S W D+L R      +L  LI    V GVT+NP+IFQKA ++ +AY+ Q  EL + G +++     +   D++ AC      ++ ++G DG VS+EV PRLA DT  T+  A  L ++V+ PN++IKIPAT   +P+I  V+++GISVNVTLIFS
Sbjct:   17 GVSVWLDDLSRDRLQSGNLQKLIDTKSVVGVTTNPSIFQKAFANGHAYDAQIAELAKRGANVDVTVRTVTTDDVRHACDVLACEWEASHGKDGRVSIEVDPRLAHDTDKTIAQAVELWRIVDHPNLFIKIPATKAGLPAITAVLAEGISVNVTLIFS 173          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_THEFY (Transaldolase OS=Thermobifida fusca (strain YX) GN=tal PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.709e-27
Identity = 72/157 (45.86%), Postives = 98/157 (62.42%), Query Frame = 2
Query:  341 GQSPWYDNLCRPVT---DLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            G + W D++ R      +L  LIA   V GVTSNP IF KA++  +AY+ Q R+L   G  +E A   +   DI+ A      +Y+ T+G DG VS+EV PRLA DT+ TV  A+ L  +V+RPN+ IKIPAT   +P+I   +++GISVNVTLIFS
Sbjct:   12 GVAVWLDDISRQRLRSGNLAELIAQRNVVGVTSNPTIFAKALAEGDAYDGQLRDLAVRGVSVEEAVRLITAYDIRWAADVLRPVYEATDGVDGRVSLEVDPRLARDTERTVAEARALWWLVDRPNLMIKIPATVEGLPAITAALAEGISVNVTLIFS 168          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_ARTS2 (Transaldolase OS=Arthrobacter sp. (strain FB24) GN=tal PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.709e-27
Identity = 74/167 (44.31%), Postives = 94/167 (56.29%), Query Frame = 2
Query:  311 TTLHDLYEQEGQSPWYDNLCR---PVTDLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            TT        G S W D+L R       L  LI    V GVT+NP+IF  AI+S   Y+    E   +G  +E   +E+   D+ DAC  F  +   T G DG VS+EV PRLA DT GT+  AK L+K VN+ NV IKIPAT   + +I   +++GISVNVTLIFS
Sbjct:    2 TTPTQQLSDAGVSIWLDDLSRGRLQTGTLRKLIEEKNVVGVTTNPSIFHAAITSGTDYDATIAEQAAAGSTVEETVFEITTTDVADACDLFAPVAAATRGVDGRVSIEVDPRLAWDTAGTIAEAKHLYKKVNKDNVLIKIPATLEGLEAITATLAEGISVNVTLIFS 168          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_NEIMF (Transaldolase OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=tal PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.150e-27
Identity = 65/156 (41.67%), Postives = 93/156 (59.62%), Query Frame = 2
Query:  341 GQSPWYDNLCRPVT---DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            GQ  W DNL R +    +L  ++  GV GVTSNPAIFQKA +    Y D+   L Q     +  Y  + + D+Q AC    + ++ T G  G+VS+EVSP L+ D QGTVE A+ L+  +   N  IK+PAT   + +++ ++S GISVN+TL+FS
Sbjct:   11 GQQIWLDNLSRSLVQSGELAQMLKQGVCGVTSNPAIFQKAFAGDALYADEVAALKQQDLTPKQRYETMAVADVQAACDVCLAEHESTGGKTGFVSLEVSPELSKDAQGTVEEARRLYAAIGCKNAMIKVPATDAGIDALETLVSDGISVNLTLLFS 166          
The following BLAST results are available for this feature:
BLAST of CK932978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
TAL_MYCUA2.497e-2845.22Transaldolase OS=Mycobacterium ulcerans (strain Ag... [more]
TAL_MYCMM2.497e-2845.22Transaldolase OS=Mycobacterium marinum (strain ATC... [more]
TAL_NEIG25.563e-2842.31Transaldolase OS=Neisseria gonorrhoeae (strain NCC... [more]
TAL_NEIG15.563e-2842.31Transaldolase OS=Neisseria gonorrhoeae (strain ATC... [more]
TAL_THISH9.488e-2844.03Transaldolase OS=Thioalkalivibrio sp. (strain HL-E... [more]
TAL_MYCLE3.606e-2743.31Transaldolase OS=Mycobacterium leprae GN=tal PE=3 ... [more]
TAL_MYCLB3.606e-2743.31Transaldolase OS=Mycobacterium leprae (strain Br49... [more]
TAL_THEFY4.709e-2745.86Transaldolase OS=Thermobifida fusca (strain YX) GN... [more]
TAL_ARTS24.709e-2744.31Transaldolase OS=Arthrobacter sp. (strain FB24) GN... [more]
TAL_NEIMF6.150e-2741.67Transaldolase OS=Neisseria meningitidis serogroup ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_B09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932978 ID=CK932978; Name=CK932978; organism=Citrus sinensis; type=EST; length=800bp
GGGGGTATCGTACTCCGTTGAAGCTTACAAATCGTCGCTCTTTATTTCTG
AGTTTTTAGATTCAAGGATCAACGAGTCTTTAATGGCGACCATTTCGAAG
CTTACAAATCCAGCTGTTTCTTCATCATCTTTGAAACCCAGATCATCATC
ATCCTCACTGCCTAAATCTTTGATCAGCCTTCAAACCAAAACTGGGTTCA
ATTCAAAAGTTGCATCTTCTCAGTTGACCCTCAGAAATAACCACCCTTTG
AAGGCCTCTTTGGTTGTGAAATGTTCCCAATCTGGTGGAAATGGAAGTAG
TGCAAAGAGGACAACTCTTCATGATCTCTATGAGCAGGAAGGGCAGAGCC
CTTGGTATGATAACCTTTGCCGCCCCGTCACAGATTTGCTTCCGCTCATT
GCAAGTGGTGTTAGAGGTGTTACCAGCAACCCTGCGATTTTCCAGAAAGC
AATATCTTCATCGAATGCTTACAATGATCAATTTAGGGAACTTGTACAAT
CTGGAAAAGATATTGAAGCTGCATATTGGGAACTTGTGATTAAGGACATT
CAAGATGCATGCAAACACTTTGAGTCAATCTATGATGAAACCAATGGCGG
TGATGGCTATGTTTCTGTCGAAGTTTCTCCCAGACTCGCTGATGATACCC
AAGGGACTGTGGAGGCAGCAAAATGGCTTCACAAAGTGGTTAATCGCCCC
AATGTATACATAAAGATACCTGCCACAGCTCCTTGCGTTCCTTCTATCAA
GGAAGTTATTTCGCAGGGCATTAGTGTCAATGTGACTCTCATATTCTCCC
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