CK932978

Overview
NameCK932978
Unique NameCK932978
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932978_ssr142 microsatellite CK932978_ssr142:142..153. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2701 contig Csv1_Contig2701:13..812. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_NEIMB (Transaldolase OS=Neisseria meningitidis serogroup B GN=tal PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.032e-27
Identity = 64/156 (41.03%), Postives = 93/156 (59.62%), Query Frame = 2
Query:  341 GQSPWYDNLCRPVT---DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            GQ  W DNL R +    +L  ++  GV GVTSNPAIFQKA +    Y D+   L Q     +  Y  + + D++ AC    + ++ T G  G+VS+EVSP L+ D QGTVE A+ L+  +   N  IK+PAT   + +++ ++S GISVN+TL+FS
Sbjct:   11 GQQIWLDNLSRSLVQSGELAQMLKQGVCGVTSNPAIFQKAFAGDALYADEIAALKQQNLSPKQRYETMAVADVRAACDVCLAEHESTGGKTGFVSLEVSPELSKDAQGTVEEARRLYAAIGCKNAMIKVPATDAGIDALETLVSDGISVNLTLLFS 166          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_KOCRD (Transaldolase OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=tal PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.049e-26
Identity = 70/167 (41.92%), Postives = 94/167 (56.29%), Query Frame = 2
Query:  311 TTLHDLYEQEGQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            TT        G S W D+L R      +L  LI    V GVT+NP IF  A++   +Y +Q  EL  +   ++ A + +   D++DAC  F  I + T G DG VS+EV PRLA D   T   A+ L + ++RPN  IKIPAT   +PSI   +++GISVNVTLIFS
Sbjct:    2 TTPTQKLSDAGVSIWLDDLSRQRLTSGNLQKLIDTENVVGVTTNPTIFAAALADGESYREQVAELAAADTSVDDAVFRITTDDVRDACDLFAPIAEATQGVDGRVSIEVDPRLAQDADATSAMAQKLSQTIDRPNALIKIPATEKGLPSIAATVAEGISVNVTLIFS 168          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_LEIXX (Transaldolase OS=Leifsonia xyli subsp. xyli GN=tal PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.370e-26
Identity = 72/153 (47.06%), Postives = 90/153 (58.82%), Query Frame = 2
Query:  353 WYDNLCRPVT---DLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            W D+L R       L  LIA   V GVT+NP IF  A++   AY++Q R L  +G  +E A +E+   D+ DA   F  +Y  T G DG VS+EV P LA D   T+  AK L   V+RPNV IKIPAT   + +I E I+ GISVNVTLIFS
Sbjct:   23 WLDDLSRERIASGGLQRLIAEKNVVGVTTNPTIFAAALAQGAAYDEQVRGLAATGVSVEDAIFEITTDDVADASDIFHDVYTATGGVDGRVSIEVEPGLAHDAAATIAEAKRLAAKVDRPNVLIKIPATVEGLEAITETIAAGISVNVTLIFS 175          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_NEIM0 (Transaldolase OS=Neisseria meningitidis serogroup C (strain 053442) GN=tal PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.789e-26
Identity = 64/156 (41.03%), Postives = 93/156 (59.62%), Query Frame = 2
Query:  341 GQSPWYDNLCRPVT---DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            GQ  W DNL R +    +L  ++  GV GVTSNPAIFQKA +    Y D+   L Q     +  Y  + + D++ AC    + ++ T G  G+VS+EVSP L+ D QGTVE A+ L+  +   N  IK+PAT   + +++ ++S GISVN+TL+FS
Sbjct:   11 GQQIWLDNLSRSLVQSGELAQMLKQGVCGVTSNPAIFQKAFAGDALYADEVAALKQQDLSPKQRYETMAVADVRAACGICLAEHESTGGKTGFVSLEVSPELSKDAQGTVEEARRLYAAIGCKNAMIKVPATDAGIDALETLVSDGISVNLTLLFS 166          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_NEIMA (Transaldolase OS=Neisseria meningitidis serogroup A GN=tal PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.337e-26
Identity = 64/156 (41.03%), Postives = 93/156 (59.62%), Query Frame = 2
Query:  341 GQSPWYDNLCRPVT---DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            GQ  W DNL R +    +L  ++  GV GVTSNPAIFQKA +    Y D+   L Q     +  Y  + + D++ AC    + ++ T G  G+VS+EVSP L+ D QGTVE A+ L+  +   N  IK+PAT   + +++ ++S GISVN+TL+FS
Sbjct:   11 GQQIWLDNLSRSLVQSGELAQMLKQGVCGVTSNPAIFQKAFAGDALYADEVAALKQQDLTPKQRYETMAVADVRAACGVCLAEHESTGGKTGFVSLEVSPELSKDAQGTVEEARRLYAAIGCKNAMIKVPATDAGIDALETLVSDGISVNLTLLFS 166          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_ARTCA (Transaldolase OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=tal PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.052e-26
Identity = 72/167 (43.11%), Postives = 95/167 (56.89%), Query Frame = 2
Query:  311 TTLHDLYEQEGQSPWYDNLCRPVTD---LLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            TT      + G S W D+L R   +   L  LI    V GVT+NP+IF  AI++   Y+        +G  +E   +E+   D+ DAC  F  +   T G DG VS+EV PRLA DT GT+  AK L+K VN+ NV IKIPAT   + +I   +++GISVNVTLIFS
Sbjct:    2 TTPTQQLSEAGVSIWLDDLSRGRLETGTLRKLIEEKNVVGVTTNPSIFHAAITAGTDYDATVAAQAAAGASVEETIFEITTTDVADACDLFAPVAAATKGVDGRVSIEVDPRLAWDTNGTIAEAKHLYKKVNKDNVLIKIPATIEGLEAITATLAEGISVNVTLIFS 168          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_CAMJJ (Transaldolase OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=tal PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.492e-22
Identity = 59/139 (42.45%), Postives = 85/139 (61.15%), Query Frame = 2
Query:  383 DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            + L L++ G+ G TSNPAIF+ AI +S  Y D+  +L   GK  +  Y EL I DIQ A      ++ + N  DG++S+E+ PRL D+T  ++  AK L+  +++ NV IKIPAT      + E++  GISVN TLIFS
Sbjct:   19 EFLNLLSHGINGATSNPAIFKNAILNSPIYKDKILKL--KGKKTKDIYEELAISDIQKAADKLAPLFYQKN--DGFISIEIDPRLHDNTTLSLGEAKRLYSAISKENVMIKIPATKASYEVMYELMKNGISVNATLIFS 153          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_CAMJ8 (Transaldolase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=tal PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.561e-22
Identity = 59/139 (42.45%), Postives = 85/139 (61.15%), Query Frame = 2
Query:  383 DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            + L L++ G+ G TSNPAIF+ AI +S  Y D+  +L   GK  +  Y EL I DIQ A      ++ + N  DG++S+E+ PRL D+T  ++  AK L+  +++ NV IKIPAT      + E++  GISVN TLIFS
Sbjct:   19 EFLNLLSHGINGATSNPAIFKNAILNSPIYKDKILKL--KGKRTKDIYEELAISDIQKAADKLAPLFYQKN--DGFISIEIDPRLHDNTTLSLGEAKRLYSAISKENVMIKIPATKASYEVMYELMKNGISVNATLIFS 153          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_CAMJR (Transaldolase OS=Campylobacter jejuni (strain RM1221) GN=tal PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.956e-21
Identity = 57/139 (41.01%), Postives = 84/139 (60.43%), Query Frame = 2
Query:  383 DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            + L L++ G+ G TSNPAIF+ AI +S  Y D+  +L +  K  +  Y EL I DIQ A      ++ + N  DG++S+E+ PRL D+T  ++  AK L+  + + N+ IKIPAT      + E++  GISVN TLIFS
Sbjct:   19 EFLNLLSHGINGATSNPAIFKNAILNSPIYKDKILKLKE--KKTKDIYEELAISDIQKAADKLAPLFYQKN--DGFISIEIDPRLHDNTTLSLGEAKRLYSAIGKENIMIKIPATKASYEVMYELMKNGISVNATLIFS 153          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_CAMJE (Transaldolase OS=Campylobacter jejuni GN=tal PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.956e-21
Identity = 57/139 (41.01%), Postives = 84/139 (60.43%), Query Frame = 2
Query:  383 DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            + L L++ G+ G TSNPAIF+ AI +S  Y D+  +L +  K  +  Y EL I DIQ A      ++ + N  DG++S+E+ PRL D+T  ++  AK L+  + + N+ IKIPAT      + E++  GISVN TLIFS
Sbjct:   19 EFLNLLSHGINGATSNPAIFKNAILNSPIYKDKILKLKE--KKTKDIYEELAISDIQKAADKLAPLFYQKN--DGFISIEIDPRLHDNTTLSLGEAKRLYSAIGKENIMIKIPATKASYEVMYELMKNGISVNATLIFS 153          
The following BLAST results are available for this feature:
BLAST of CK932978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
TAL_NEIMB8.032e-2741.03Transaldolase OS=Neisseria meningitidis serogroup ... [more]
TAL_KOCRD1.049e-2641.92Transaldolase OS=Kocuria rhizophila (strain ATCC 9... [more]
TAL_LEIXX1.370e-2647.06Transaldolase OS=Leifsonia xyli subsp. xyli GN=tal... [more]
TAL_NEIM01.789e-2641.03Transaldolase OS=Neisseria meningitidis serogroup ... [more]
TAL_NEIMA2.337e-2641.03Transaldolase OS=Neisseria meningitidis serogroup ... [more]
TAL_ARTCA3.052e-2643.11Transaldolase OS=Arthrobacter chlorophenolicus (st... [more]
TAL_CAMJJ3.492e-2242.45Transaldolase OS=Campylobacter jejuni subsp. jejun... [more]
TAL_CAMJ84.561e-2242.45Transaldolase OS=Campylobacter jejuni subsp. jejun... [more]
TAL_CAMJR2.956e-2141.01Transaldolase OS=Campylobacter jejuni (strain RM12... [more]
TAL_CAMJE2.956e-2141.01Transaldolase OS=Campylobacter jejuni GN=tal PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_B09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932978 ID=CK932978; Name=CK932978; organism=Citrus sinensis; type=EST; length=800bp
GGGGGTATCGTACTCCGTTGAAGCTTACAAATCGTCGCTCTTTATTTCTG
AGTTTTTAGATTCAAGGATCAACGAGTCTTTAATGGCGACCATTTCGAAG
CTTACAAATCCAGCTGTTTCTTCATCATCTTTGAAACCCAGATCATCATC
ATCCTCACTGCCTAAATCTTTGATCAGCCTTCAAACCAAAACTGGGTTCA
ATTCAAAAGTTGCATCTTCTCAGTTGACCCTCAGAAATAACCACCCTTTG
AAGGCCTCTTTGGTTGTGAAATGTTCCCAATCTGGTGGAAATGGAAGTAG
TGCAAAGAGGACAACTCTTCATGATCTCTATGAGCAGGAAGGGCAGAGCC
CTTGGTATGATAACCTTTGCCGCCCCGTCACAGATTTGCTTCCGCTCATT
GCAAGTGGTGTTAGAGGTGTTACCAGCAACCCTGCGATTTTCCAGAAAGC
AATATCTTCATCGAATGCTTACAATGATCAATTTAGGGAACTTGTACAAT
CTGGAAAAGATATTGAAGCTGCATATTGGGAACTTGTGATTAAGGACATT
CAAGATGCATGCAAACACTTTGAGTCAATCTATGATGAAACCAATGGCGG
TGATGGCTATGTTTCTGTCGAAGTTTCTCCCAGACTCGCTGATGATACCC
AAGGGACTGTGGAGGCAGCAAAATGGCTTCACAAAGTGGTTAATCGCCCC
AATGTATACATAAAGATACCTGCCACAGCTCCTTGCGTTCCTTCTATCAA
GGAAGTTATTTCGCAGGGCATTAGTGTCAATGTGACTCTCATATTCTCCC
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